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Protein Data Bank (1,664 words) [view diff] exact match in snippet view article find links to article

The Protein Data Bank (PDB) is a database for the three-dimensional structural data of large biological molecules such as proteins and nucleic acids,

PMID 11839496. Helix-turn-helix motif, lambda-like repressor, from EMBL Full PDB entry for PDB ID 1LMB Cro/C1-type HTH domain, more HTHs in PROSITE

of each 3D macromolecular structure deposited in the Protein Data Bank (PDB). The original version of the database was developed around 1995 by Roman

  PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB PDB: 11ba​ PDB: 11bg​ PDB: 1a2w​ PDB: 1a4y​ PDB: 1a5p​ PDB: 1a5q​ PDB: 1afk​ PDB: 1afl​ PDB: 1afu​

class of enzymes, with PDB accession codes 1N05, 1N06, 1N07, 1N08, 1NB0, 1NB9, 1P4M, 1Q9S, 2P3M, 2VBS, 2VBT, 3CTA, 2VBU, and 2VBV. PDB: 3CTA​; Bonanno, J

(2): 193–203. doi:10.1016/j.chom.2013.01.009. PMC 3808164. PMID 23414759. PDB: 4RH7​; Carter AP (February 2013). "Crystal clear insights into how the dynein

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB PDB: 1kzh​ PDB: 1mto​ PDB: 1pfk​ PDB: 3pfk​ PDB: 4pfk​ PDB: 6pfk​

  PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB PDB: 1cev​ PDB: 1d3v​ PDB: 1gq6​ PDB: 1gq7​ PDB: 1hq5​ PDB: 1hqf​ PDB: 1hqg​ PDB: 1hqh​ PDB: 1hqx​

clamp loader requires ATP hydrolysis to "close" the clamp around the DNA. PDB: 1W60​; Kontopidis G, Wu SY, Zheleva DI, Taylor P, McInnes C, Lane DP, et al

PDB v ABDB Jerudong v Majra Indera v QAF LLRC v Najip Kilanas v Wijaya Majra v PDB Najip v Jerudong Wijaya v Indera Kilanas v LLRC ABDB v QAF PDB v

glycolysis, which requires Enolase) production.[medical citation needed] PDB: 2ONE​; Zhang E, Brewer JM, Minor W, Carreira LA, Lebioda L (October 1997)

Brunei Super League IKLS Indera Kasuka Kota Ranger Lun Bawang MS ABDB MS PDB Najip Setia Perdana Wijaya from District Leagues BSRC Jerudong Panchor Murai

Leviviridae. Bunyaviral RdRp monomer (PDB 5AMQ) resembles the heterotrimeric complex of Orthomyxoviral (Influenza; PDB 4WSB) RdRp. Since it is a protein universal

illustrated above σ70 consensus E. coli promoter DNA. (b) Organization of E. coli σ70 in an RNA polymerase transcription initiation complex. (PDB 4YLN).

by allied intelligence agencies. At the discretion of the president, the PDB may also be provided to the president-elect of the United States, between

available in the PDB for Human Superoxide dismutase [Cu-Zn] PDBe-KB provides an overview of all the structure information available in the PDB for Human Superoxide

late 2007, 19 structures have been solved for this class of enzymes, with PDB accession codes 1EVU, 1EX0, 1F13, 1FIE, 1G0D, 1GGT, 1GGU, 1GGY, 1IU4, 1KV3

  PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB PDB: 1k25​ PDB: 1mwr​ PDB: 1mws​ PDB: 1mwt​ PDB: 1mwu​ PDB: 1pmd​ PDB: 1pyy​ PDB: 1qme​ PDB: 1qmf​

Key interaction observed between K529 and carbonyl oxygen of adenylate. PDB 4G36]] The luciferase of Photinus pyralis catalyzes a two-step bioluminescent

v MS PDB Najip I-Team v Kasuka Wijaya v MS ABDB Kasuka v Tabuan Muda A (Brunei U21s) Najip I-Team v Lun Bawang Jerudong v Wijaya MS ABDB v MS PDB Kota

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

doi:10.1038/s41579-021-00586-9. PMC 8671357. PMID 34244677. S2CID 235787691. PDB-101 Molecule of the Month: 135 HIV Integrase Integrases at the U.S. National

acid alpha-helical region that forms a dimeric, four-helical coiled coil. PDB: 1y28​; Dunham CM, Dioum EM, Tuckerman JR, Gonzalez G, Scott WG, Gilles-Gonzalez

dehydrogenase: RCSB PDB Molecule of the Month Archived 2013-12-24 at the Wayback Machine Overview of all the structural information available in the PDB for UniProt:

bacteria have also a class-I GS). GSII are decamer of identical subunits.PDB: 2OJW​. Plants have two or more isozymes of GSII, one of the isozymes is

protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB 1aab​, 1cg7​, 1ckt​, 1e7j​, 1gt0​, 1hme​, 1hmf​

for uncategorized sequences. ECOD has the best PDB coverage of all three successors: it covers every PDB structure, and is updated biweekly. The direct

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: Q15126 (Phosphomevalonate kinase) at the PDBe-KB. Portal: Biology

NADPH binary complex". J. Biol. Chem. 267 (34): 24841–7. doi:10.2210/pdb1abn/pdb. PMID 1447221. Gulbis JM, Zhou M, Mann S, MacKinnon R (July 2000). "Structure

available in the PDB for UniProt: P19137 (Laminin subunit alpha-1) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

humans is encoded by the NTSR1 gene. For a crystal structure of NTS1, see pdb code 4GRV. In addition, high-resolution crystal structures have been determined

ADP/ATP carrier PDB: 1OKC​/PDB: 2C3E​, the yeast ADP/ATP carrier Aac2p PDB: 4C9G​/PDB: 4C9H​, the yeast ADP/ATP carrier Aac3p PDB: 4C9J​/PDB: 4C9Q​, Another

Pedro Bay Airport (IATA: PDB, FAA LID: 4K0) is a state-owned public-use airport located one nautical mile (1.85 km) west of the central business district

salivary amylase: calcium ion visible in pale khaki, chloride ion in green. PDB 1SMD Identifiers EC no. 3.2.1.1 CAS no. 9000-90-2 Databases IntEnz IntEnz

protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB 1bu2​, 1e9h​, 1f5q​, 1fin​, 1fvv​, 1g3n​, 1gy3​

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

"Rubisco". Molecule of the Month. RCSB PDB (Research Collaboratory for Structural Bioinformatics PDB). doi:10.2210/rcsb_pdb/mom_2000_11. Lodish H, Berk A, Zipursky

protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB 1q23G:6-209 1pd5A:6-209 1nocB:6-209 1qca :1-205

composed of nucleotide sequences from PDB and GenBank, protein sequences from SWISS-PROT, translated GenBank, PIR, PRF, PDB, and associated abstracts and citations

include: HIV-1 reverse transcriptase from human immunodeficiency virus type 1 (PDB: 1HMV​) has two subunits, which have respective molecular weights of 66 and

onto the structure onto a related archaeal CCA tRNA nucleotidyltransferase (PDB: 1R89​) allows for assignment of the residues to specific functions: γ-phosphate

17 (3): 849–858. doi:10.1105/tpc.104.028886. PMC 1069703. PMID 15722470. PDB: 1GQ8​; Johansson K, El-Ahmad M, Friemann R, Jörnvall H, Markovic O, Eklund

Self-stable region of a protein's chain that folds independently from the rest PDB: 3O08​; Kuettner EB, Kettner K, Keim A, Svergun DI, Volke D (2010). "Crystal

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

state". Journal of Molecular Biology. 224 (1): 159–77. doi:10.2210/pdb1ake/pdb. PMID 1548697. Whitford PC, Miyashita O, Levy Y, Onuchic JN (March 2007)

Accession Number 2A79​), and then refined in a lipid membrane-like environment (PDB: 2r9r​). Voltage-gated K+ channels are selective for K+ over other cations

databases together house over 50,000 reference genomes. Protein Data Bank (PDB) is a database of three dimensional structures of biological macromolecules

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

Accession Number 2A79​), and then refined in a lipid membrane-like environment (PDB: 2r9r​). Voltage-gated K+ channels are selective for K+ over other cations

protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB 1dil​, 1dim​, 1eur​, 1eus​, 1eut​, 1euu​, 1kit​

protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB 1FBQ​, 1FBS​, 1FBU​, 1FYK​, 1FYL​, 1FYM​, 1HKS​

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

(40): 37215–22. doi:10.1074/jbc.M101823200. PMID 11485995. S2CID 24354635. PDB: 1zvt​; Corbett KD, Schoeffler AJ, Thomsen ND, Berger JM (August 2005). "The

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

glycerol phosphate shuttle, creatine kinase, glycolysis, gluconeogenesis PDB: 1X0V​; Ou X, Ji C, Han X, Zhao X, Li X, Mao Y, Wong LL, Bartlam M, Rao Z

interactive pathway map can be edited at WikiPathways: "TCACycle_WP78". PDB: 7ACN​; Lauble H, Kennedy MC, Beinert H, Stout CD (1992). "Crystal structures

His324A and Tyr552A shown.PDB: 2FY3​ Stereoscopic depiction of choline and acetyl-CoA in ChAT active site.(PDB: 2FY3​, PDB: 2FY5​ - overlaid). Stereoscopic

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

salivary amylase: calcium ion visible in pale khaki, chloride ion in green. PDB 1SMD Identifiers EC no. 3.2.1.1 CAS no. 9000-90-2 Databases IntEnz IntEnz

late 2007, 8 structures have been solved for this class of enzymes, with PDB accession codes 1EHI, 1IOV, 1IOW, 2DLN, 2FB9, 2I80, 2I87, and 2I8C. Roper

DNA polymerase from the thermophilic bacterium, Thermus aquaticus (Taq) (PDB 1BGX, EC 2.7.7.7) is used in the polymerase chain reaction, an important

structures have been solved for this class of enzymes, and are deposited in the PDB. All have a 3-layer (aba) sandwich) architecture (CATH code 3.40.1160.10)

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

accurately diagnose children with the disease. Mevalonic aciduria Mevalonic acid PDB: 2X7I​; Oke M, Carter LG, Johnson KA, Liu H, McMahon SA, Yan X, et al. (June

algae Porphyridium cruentum at pH8". RCSB Protein Data Bank (PDB). doi:10.2210/pdb3v57/pdb. PDB ID: 3V57. Retrieved 12 October 2012. {{cite journal}}: Cite

Research Collaboratory for Structural Bioinformatics (RCSB) Protein Data Bank (PDB). Archived from the original on 2008-05-31. Retrieved 2008-01-13. The double

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

glutaminase 1 may offer a promising strategy for inducing senolysis in vivo. PDB: 3A56​; Hashizume R, Mizutani K, Takahashi N, Matsubara H, Matsunaga A, Yamaguchi

Crystal structure of EF-G in the POST state with Domains I - V labeled. PDB ID: 4V5F

Genome Browser. Overview of all the structural information available in the PDB for UniProt: O43488 (Human Aflatoxin B1 aldehyde reductase member 2 (AKR7A2))

Biochemistry. 67 (1): 71–98. doi:10.1146/annurev.biochem.67.1.71. PMID 9759483. PDB: 1PEU​; Uppsten M, Färnegårdh M, Jordan A, Eliasson R, Eklund H, Uhlin U

Center for Biotechnology Information, U.S. National Library of Medicine. PDB: 1WSR​; Okamura-Ikeda K, Hosaka H, Yoshimura M, Yamashita E, Toma S, Nakagawa

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

available in the PDB for UniProt: P02671 (Fibrinogen alpha chain) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:

Tabuan Muda 'A' 2–4 MS ABDB 4 February 2018 Indera SC 4–1 IKLS FC 16 February 2018 MS PDB 4–1 Kota Ranger FC 17 February 2018 Najip I-Team 0–5 Kasuka FC

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

PMID 19273244. "Cystatin: a protein that flips out!". Quite Interesting PDB Structures; Protein Data Bank in Europe. European Bioinformatics Institute

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P31939 (Human Bifunctional purine biosynthesis protein PURH

one Pfam domain. New families come from a range of sources, primarily the PDB and analysis of complete proteomes to find genes with no Pfam hit. For each

Subject Headings (MeSH) PDBe-KB provides an overview of all the structure information available in the PDB for Human Thymidylate synthase Portal: Biology

Dopa-Responsive Dystonia Overview of all the structural information available in the PDB for UniProt: P30793 (Human GTP cyclohydrolase 1) at the PDBe-KB. Portal:

late 2007, 3 structures have been solved for this class of enzymes, with PDB accession codes 1AX4, 2C44, and 2OQX. BURNS RO, DEMOSS RD (1962). "Properties

tautomerized Ala-PLP adduct. Hydrolysis of the acyl-enzyme then yields 3hAnt. PDB: 2HZP​; Lima S, Khristoforov R, Momany C, Phillips RS (March 2007). "Crystal

after mutations in all three were found to cause Aicardi–Goutières syndrome. PDB: 1JL1​; Goedken ER, Marqusee S (December 2001). "Native-state energetics

late 2006, two structures have been solved for this class of enzymes, with PDB accession codes 2CQS and 2CQT. Alexander JK (June 1968). "Purification and

late 2007, 7 structures have been solved for this class of enzymes, with PDB accession codes 1HN1, 1LO7, 1LO8, 1LO9, 1Q4S, 1Q4T, and 1Q4U. Chang KH, Liang

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

late 2007, 6 structures have been solved for this class of enzymes, with PDB accession codes 1GXY, 1GXZ, 1GY0, 1OG1, 1OG3, and 1OG4. Okazaki IJ, Zolkiewska

PDBe-KB provides an overview of all the structure information available in the PDB for Human Galactose-1-phosphate uridylyltransferase Portal: Biology

Biochem. J. 251 (3): 677–83. doi:10.1042/bj2510677. PMC 1149058. PMID 2970843. PDB: 4pfk​; Evans PR, Farrants GW, Hudson PJ (June 1981). "Phosphofructokinase:

carboxylase (also known as PEP carboxylase, PEPCase, or PEPC; EC 4.1.1.31, PDB ID: 3ZGE) is an enzyme in the family of carboxy-lyases found in plants and

metabolism so 6PGD inhibitors have been sought. Parietin, a 6PGD inhibitor PDB: 1PGQ​; Adams MJ, Ellis GH, Gover S, Naylor CE, Phillips C (July 1994). "Crystallographic

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

metabolism so 6PGD inhibitors have been sought. Parietin, a 6PGD inhibitor PDB: 1PGQ​; Adams MJ, Ellis GH, Gover S, Naylor CE, Phillips C (July 1994). "Crystallographic

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

PDBe-KB provides an overview of all the structure information available in the PDB for Human Interleukin-4 receptor subunit alpha This article incorporates

late 2007, 6 structures have been solved for this class of enzymes, with PDB accession codes 1DO8, 1EFK, 1EFL, 1GZ3, 1LLQ, 1O0S, 1PJ2, 1PJ3, 1PJ4, 1PJL

late 2007, six structures have been solved for this class of enzymes, with PDB accession codes 1IG0, 1IG3, 2F17, 2G9Z, 2HH9, and 2OMK. Leuthardt F; Nielsen

macromolecule structures, such as those found in the Protein Data Bank (PDB). It was originally developed by Roger Sayle in the early 1990s. Historically

late 2007, 4 structures have been solved for this class of enzymes, with PDB accession codes 1EH5, 1EI9, 1EXW, and 1PJA. palmitoyl Acyl-protein thioesterases

Biochem. J. 251 (3): 677–83. doi:10.1042/bj2510677. PMC 1149058. PMID 2970843. PDB: 4pfk​; Evans PR, Farrants GW, Hudson PJ (June 1981). "Phosphofructokinase:

carboxylase (also known as PEP carboxylase, PEPCase, or PEPC; EC 4.1.1.31, PDB ID: 3ZGE) is an enzyme in the family of carboxy-lyases found in plants and

PDB identifier 2XZM 40S subunit viewed from the solvent-exposed side, PDB identifier 2XZM 60S subunit viewed from the subunit interface side, PDB identifiers

late 2007, 5 structures have been solved for this class of enzymes, with PDB accession codes 1GPM, 1WL8, 2A9V, 2D7J, and 2DPL. GMP synthase is the second

structures in the EM Data Bank (EMDB) Overview of all the structural information available in the PDB for UniProt: P04253 (Hemocyanin II) at the PDBe-KB.

Committee homepage PDBe-KB provides an overview of all the structure information available in the PDB for Human Arylamine N-acetyltransferase 2 v t e

Aicardi-Goutieres syndrome Overview of all the structural information available in the PDB for UniProt: O75792 (Human Ribonuclease H2 subunit A) at the PDBe-KB. v t

Factors) ABI3 (ABscisic acid Insensitive3) RAV (Related to ABI3/VP1) PDB: 1WID​ and PDB: 1YEL​ are only known NMR solution phase structures of the B3 DNA

1016/S0969-2126(01)00659-1. PMID 11591351. PDBe-KB provides an overview of all the structure information available in the PDB for Human Ribonuclease pancreatic v t e

Genome Browser. Overview of all the structural information available in the PDB for UniProt: O94766 (Human Beta-1,3-Glucuronyltransferase 3 (B3GAT3)) at

(Pt 1): 129–36. doi:10.1042/BJ20020301. PMC 1222743. PMID 11978179. PDB: 1EAA​, PDB: 1dpb​ Dihydrolipoyl+transacetylase at the U.S. National Library of

available in the PDB for UniProt: P20142 (Human Gastricsin) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt: P0DJD7

subunits. The active site for pyruvate dehydrogenase (image created from PDB: 1NI4​) holds TPP through metal ligation to a magnesium ion (purple sphere)

PMID 19015152. Overview of all the structural information available in the PDB for UniProt: Q8TDP1 (Human Ribonuclease H2 subunit C (RNASEH2C)) at the PDBe-KB

The Protein Data Bank (PDB) file format is a textual file format describing the three-dimensional structures of molecules held in the Protein Data Bank

S2CID 36906656. Overview of all the structural information available in the PDB for UniProt: O14732 (Human Inositol monophosphatase 2) at the PDBe-KB. Portal:

available in the PDB for Alcohol dehydrogenase 1A. PDBe-KB provides an overview of all the structure information available in the PDB for Alcohol dehydrogenase

Protein Data Bank. Molecule of the Month (MOTM). Protein Data Bank (PDB). doi:10.2210/rcsb_pdb/mom_2005_9. Archived from the original on October 25, 2011. Cholera+Toxin

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

6-bisphosphatase and its fructose 2,6-bisphosphate complex. Rendered from PDB 3FBP. Identifiers Symbol FBP1 Alt. symbols FBP NCBI gene 2203 HGNC 3606 OMIM

As of March 2010[update], there were 20 structures of this protein in the PDB, most of which are homodimeric. Glycerol Kinase Glycerol+Kinase at the U

PMID 19229323. Overview of all the structural information available in the PDB for UniProt: Q9NP87 (Human DNA-directed DNA/RNA polymerase mu) at the PDBe-KB

the TPMT assay Overview of all the structural information available in the PDB for UniProt: P51580 (Human Thiopurine S-methyltransferase) at the PDBe-KB

Biology portal Oxidative phosphorylation Electron transport chain Metabolism PDB: 1SUW​; Liu J, Lou Y, Yokota H, Adams PD, Kim R, Kim SH (Nov 2005). "Crystal

S8/S53 domain Structure of pseudomonalisin (PDB: 1GA6​) Identifiers Symbol Peptidase_S8 Pfam PF00082 InterPro IPR000209 PROSITE PDOC00125 CATH 1GA6 SCOP2

The Promised Day Brigade (PDB; Arabic: لواء اليوم الموعود, romanized: Liwāʾ al-Yawm al-Mawʿūd), originally called the Muqawimun (Arabic: المقاومون,

UCSC Genome Browser. Overview of all the structural information available in the PDB for UniProt: P15289 (Human Arylsulfatase A) at the PDBe-KB. v t e

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

cognate tRNA was that of the E. coli tRNA-Gln:GlnRS, determined in 1989 (PDB accession code (1GSG). This was also the first crystal structure of a non-viral

Genome Browser. Overview of all the structural information available in the PDB for UniProt: Q8IU85 (Human Calcium/calmodulin-dependent protein kinase type

Albumin website Albumin binding prediction PDBe-KB provides an overview of all the structure information available in the PDB for Human Serum albumin.

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB 1hvwA:4-23 1axh :1-37

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

Available structures PDB Ortholog search: PDBe RCSB

only one structure has been solved for this class of enzymes, with the PDB accession code 2JMU. Thiamine-diphosphate kinase Hashitani Y, Cooper JR (1972)

Genome Browser. Overview of all the structural information available in the PDB for UniProt: P04234 (T-cell surface glycoprotein CD3 delta chain) at the

the Database, Binary JSON Data Type, Per-PDB Data Guard Physical Standby (aka Multitenant Data Guard), Per-PDB GoldenGate Change Capture, Self-Managing

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

lead to regression of tumours in mice. Citrullinemia Urea cycle Synthetase PDB: 2nz2​; Karlberg T, Collins R, van den Berg S, Flores A, Hammarström M, Högbom

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

a monomeric wild-type protein that was first purified from bovine lung (PDB ID: 2F38). This enzyme belongs to the family of aldo-keto reductase (AKR)

superfamily Trimeric structure of TNF alpha, produced by Mus musculus, based on PDB structure 2TNF (1.4 Å Resolution). Different colors represent different monomers

DnaJ domain PDB rendering based on 1hdj. Identifiers Symbol DnaJ Pfam PF00226 InterPro IPR001623 PROSITE PDOC00553 SCOP2 1xbl / SCOPe / SUPFAM CDD cd06257

  PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB PDB: 1bjp​ PDB: 1gyj​ PDB: 1gyx​ PDB: 1gyy​ PDB: 1otf​ PDB: 1s0y​ PDB: 4ota​ PDB: 4otb​ PDB: 4otc​

011. PMID 15296733. Overview of all the structural information available in the PDB for UniProt: Q9UBT6 (DNA polymerase kappa) at the PDBe-KB. v t e

Albumin website Albumin binding prediction PDBe-KB provides an overview of all the structure information available in the PDB for Human Serum albumin.

PDBe-KB provides an overview of all the structure information available in the PDB for Human Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase

late 2007, 5 structures have been solved for this class of enzymes, with PDB accession codes 1CKM, 1CKN, 1CKO, 1P16, and 2C46. Ensinger MJ, Martin SA

this protein have been solved by X-ray crystallography and deposited in the PDB. It has been shown in vitro to be a highly potent HIV entry inhibitor. It

PMID 17672918. Overview of all the structural information available in the PDB for UniProt: P55042 (Human GTP-binding protein RAD (RRAD)) at the PDBe-KB

provirus sites. The structure of Tre in complex with loxLTR has been resolved (PDB: 5U91​), allowing for analyzing the roles of individual mutations. Sarkar

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

superfamily Trimeric structure of TNF alpha, produced by Mus musculus, based on PDB structure 2TNF (1.4 Å Resolution). Different colors represent different monomers

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

Available structures PDB Ortholog search: PDBe RCSB

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB 1fjr​

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

the Database, Binary JSON Data Type, Per-PDB Data Guard Physical Standby (aka Multitenant Data Guard), Per-PDB GoldenGate Change Capture, Self-Managing

protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB 1jv2​, 1kup​, 1kuz​, 1l3y​, 1l5g​, 1m1x​, 1m8o​

interface with the catalytic domain activating it for sphingomyelin hydrolysis. PDB: 2ddt​; Ago H, Oda M, Takahashi M, Tsuge H, Ochi S, Katunuma N, Miyano M

functional in humans) Discovery and development of COX-2 selective inhibitors PDB: 1CQE​; Picot D, Loll PJ, Garavito RM (January 1994). "The X-ray crystal

PMID 17286855. Overview of all the structural information available in the PDB for UniProt: Q9BVG8 (Human Kinesin-like protein KIFC3) at the PDBe-KB. v

060194.002101. "PDB101: Molecule of the Month: Carbonic Anhydrase". RCSB: PDB-101. Retrieved 3 December 2018. Supuran CT (27 May 2004). "Carbonic Anhydrases:

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

Biochemistry. 121 (2): 443–9. doi:10.1111/j.1432-1033.1982.tb05807.x. PMID 7037396. PDB: 2NX9​; Studer R, Dahinden P, Wang WW, Auchli Y, Li XD, Dimroth P (March

structures of a bacterial guanylate cyclase domain (pdb code 2W01) and a sGC guanylate cyclase catalytic domain (pdb code 3ET6) were reported. In late 2009, the

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB PDB: 2KJ1​

Biotechnology Information PDBe-KB provides an overview of all the structure information available in the PDB for Human Prolyl endopeptidase Portal: Biology

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P27600 (Mouse Guanine nucleotide-binding protein subunit alpha-12

late 2007, 4 structures have been solved for this class of enzymes, with PDB accession codes 2G65, 2G68, 2G6A, and 2G6C. Shi D, Morizono H, Yu X, Roth

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

PDB has increased each year, being obtained typically by X-ray crystallography, NMR spectroscopy, or cryo-electron microscopy. The PDB format (.pdb)

PDBe-KB provides an overview of all the structure information available in the PDB for Human Natural cytotoxicity triggering receptor 2 (NCR2) v t e

sequence that also comprises the site for inhibitory interactions with IκB. PDB: 1SVC​;Müller CW, Rey FA, Sodeoka M, Verdine GL, Harrison SC (January 1995)

late 2007, 27 structures have been solved for this class of enzymes, with PDB accession codes 1C82, 1EGU, 1F1S, 1F9G, 1I8Q, 1LOH, 1LXK, 1LXM, 1N7N, 1N7O

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

(elongation factor G) EF-P (elongation factor P) eEF-1 EFR (EF-Tu receptor) PDB Molecule of the Month EF-Tu Weijland A, Harmark K, Cool RH, Anborgh PH, Parmeggiani

late 2007, 3 structures have been solved for this class of enzymes, with PDB accession codes 2D8A, 2DFV, and 2DQ4. Green ML, Elliott WH (1964). "The enzymic

Molecule of the Month. RCSB Protein Data Bank. doi:10.2210/rcsb_pdb/mom_2007_9.; PDB: 1CSC, 5CSC, 5CTS​ Bayer E, Bauer B, Eggerer H (Nov 1981). "Evidence

norbinaltorphimine. JDTic has been used to create crystal structures of KOR [ PDB: 4DJH, 6VI4​]. JDTic is a long-acting ("inactivating") antagonist of the

Phosphorylase Structure of the PNPase trimer from Streptomyces antibioticus. PDB 1e3p. Identifiers EC no. 2.7.7.8 CAS no. 9014-12-4 Databases IntEnz IntEnz

S2CID 27852377. Overview of all the structural information available in the PDB for UniProt: P49642 (Human DNA primase small subunit (PRIM1)) at the PDBe-KB

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

Mo enhanced the amino acid content of tea shoots and also the crop yield. PDB: 1Q16​; Bertero MG, Rothery RA, Palak M, Hou C, Lim D, Blasco F, Weiner JH

late 2007, 4 structures have been solved for this class of enzymes, with PDB accession codes 1BS2, 1F7U, 1F7V, and 1IQ0. Cavarelli J, Delagoutte B, Eriani

S2CID 24995048. Overview of all the structural information available in the PDB for UniProt: O60930 (Human Ribonuclease H1 (RNASEH1)) at the PDBe-KB. v t

late 2007, 9 structures have been solved for this class of enzymes, with PDB accession codes 1AHU, 1AHV, 1AHZ, 1VAO, 1W1J, 1W1K, 1W1L, 1W1M, and 2VAO

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

2005-07-18. Archived from the original on 2012-12-11. Retrieved 2009-04-24. PDB: 1suv​; Cheng Y, Zak O, Aisen P, Harrison SC, Walz T (Feb 2004). "Structure

  PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB PDB: 1UVB​ PDB: 1afh​ PDB: 1b1u​ PDB: 1be2​ PDB: 1bea​ PDB: 1bfa​ PDB: 1bip​ PDB: 1bwo​ PDB: 1cz2​

commonly used in research. RNase A (e.g., bovine pancreatic ribonuclease A: PDB: 2AAS​) is one of the hardiest enzymes in common laboratory usage; one method

polyomavirus VP2 protein (white), which binds to a pentamer oriented toward the central cavity. VP1 is from PDB: 1SIE​; VP2 is from PDB: 1CN3 1CN3​.

PMID 27216889. Overview of all the structural information available in the PDB for UniProt: Q8IWT1 (Human Sodium channel subunit beta-4 (SCN4B)) at the

interactions. Current version Mercury can read "cif", ".mol", ".mol2", ".pdb", ".res", ".sd" and ".xyz" types of files. Mercury has its own file format

S2CID 7827573. Overview of all the structural information available in the PDB for UniProt: Q9UBQ5 (Human Eukaryotic translation initiation factor 3 subunit

Pos. Driver DJU JYL1 COP JYL2 ARH JYL3 PDB Pts. 1 Kasper H. Jensen 4 2 2 2 5 15 1 3 1 2 3 3 203 2 Casper Elgaard 3 3 3 4 3 3 5 1 5 4 1 2 200 3 Nicolai

2008-12-04. Overview of all the structural information available in the PDB for UniProt: Q9H461 (Human Frizzled-8 (FZD8)) at the PDBe-KB. This article

late 2007, 27 structures have been solved for this class of enzymes, with PDB accession codes 1AV6, 1B42, 1BKY, 1EAM, 1EQA, 1F5A, 1FA0, 1JSZ, 1JTE, 1JTF

PDBe-KB provides an overview of all the structure information available in the PDB for Human Carcinoembryonic antigen-related cell adhesion molecule 8 (CEACAM8)

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

S2CID 7200157. PDBe-KB provides an overview of all the structure information available in the PDB for Human DNA primase large subunit (PRIM2) v t e

Journal of Biological Chemistry. 267 (28): 20371–20376. doi:10.2210/pdb2int/pdb. PMID 1400355. S2CID 2310949. Zhu J (September 2015). "T helper 2 (Th2) cell

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

available in the PDB for UniProt: Q99467 (Human CD180 antigen) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:

235 (1–2): 372–81. doi:10.1111/j.1432-1033.1996.00372.x. PMID 8631357. PDB: 1GCU​; Kikuchi A, Park SY, Miyatake H, Sun D, Sato M, Yoshida T, Shiro Y

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P14324 (Human Farnesyl pyrophosphate synthaseC) at the PDBe-KB

late 2007, two structures have been solved for this class of enzymes, with PDB accession codes 1CIV and 7MDH. Connelly JL, Danner DJ, Bowden JA (1968).

Dihydrofolate reductase Overview of all the structural information available in the PDB for UniProt: P00374 (Dihydrofolate reductase) at the PDBe-KB. Portal: Biology

late 2007, 7 structures have been solved for this class of enzymes, with PDB accession codes 1BWP, 1BWQ, 1BWR, 1ES9, 1FXW, 1VYH, and 1WAB. Blank ML, Lee

Genome Browser. Overview of all the structural information available in the PDB for UniProt: Q9H0F7 (Human ADP-ribosylation factor-like protein 6 (ARL6))

Genome Browser. Overview of all the structural information available in the PDB for UniProt: P01732 (Human T-cell surface glycoprotein CD8 alpha chain) at

67 (2): 338–67. doi:10.1124/pr.114.009647. PMC 4394687. PMID 25713288. PDB: 4L6R​; Siu FY, He M, de Graaf C, Han GW, Yang D, Zhang Z, et al. (July 2013)

late 2007, 6 structures have been solved for this class of enzymes, with PDB accession codes 1KP9, 1KPG, 1KPH, 1KPI, 1L1E, and 1TPY. Chung AE, Law JH

PMID 11134927. S2CID 216930. PDB ID: 1EYX. Image created with RasTop (Molecular Visualization Software). Bank, RCSB Protein Data. "RCSB PDB - 3V57: Crystal Structure

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P19320 (Vascular cell adhesion protein 1) at the PDBe-KB.

PMID 9653160. Overview of all the structural information available in the PDB for UniProt: O75394 (Human 39S ribosomal protein L33, mitochondrial (MRPL33))

inositol ring, also uses a C2 domain to bind to the membrane (e.g. 1e8w PDB entry). The C2 domain is currently only known from eukaryotes and the prokaryote

regions: human cKIT, Tyr568 (PDB: 1PKG) human CSF1R, Tyr561 (PDB: 3LCD, homologous to cKIT site) human EPHA2, Tyr594 (PDB: 4PDO, two residues after the

characteristic time scale of 7,000 seconds (almost two hours) at 10 °C and pH 5. PDB: 1ygw​; Pfeiffer S, Karimi-Nejad Y, Rüterjans H (1997). "Limits of NMR structure

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: Q9Y2T3 (Human Guanine deaminase) at the PDBe-KB. Portal: Biology

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

in the PDB for Human Adhesion G protein-coupled receptor L3 PDBe-KB provides an overview of all the structure information available in the PDB for Mouse

late 2007, 4 structures have been solved for this class of enzymes, with PDB accession codes 1M3U, 1O66, 1O68, and 1OY0. Powers SG, Snell EE (1976). "Ketopantoate

Subject Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: Q9BXR5 (Toll-like receptor 10) at the PDBe-KB. v t e

PMID 17353931. PDBe-KB provides an overview of all the structure information available in the PDB for Human Methionine aminopeptidase 1 Portal: Biology v t e

late 2007, 4 structures have been solved for this class of enzymes, with PDB accession codes 1XPK, 1XPL, 1XPM, and 2P8U. HMG-CoA+synthase at the U.S.

Subject Headings (MeSH) PDBe-KB provides an overview of all the structure information available in the PDB for Human Eosinophil-derived neurotoxin v t e

Headings (MeSH) PDBe-KB provides an overview of all the structure information available in the PDB for Human Glutaryl-CoA dehydrogenase, mitochondrial

structure. The structure of topo III (see below) bound to single-stranded DNA (pdb id = 1I7D) shows how the HTH and Toprim domain are coordinated about the

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

Headings (MeSH) PDBe-KB provides an overview of all the structure information available in the PDB for Human Indoleamine 2,3-dioxygenase 1 Portal: Biology

late 2007, 15 structures have been solved for this class of enzymes, with PDB accession codes 1S5B, 1S5C, 1S5D, 1S5E, 1S5F, 1SGK, 1TOX, 1XDT, 1XK9, 1ZM3

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P08514 (Human Integrin alpha-IIb) at the PDBe-KB. v t e

only one structure has been solved for this class of enzymes, with the PDB accession code 2A14. Tryptamine tryptamine+N-methyltransferase at the U.S

PDBe-KB provides an overview of all the structure information available in the PDB for Human 5'-AMP-activated protein kinase subunit beta-1 (PRKAB1) Portal:

regions: human cKIT, Tyr568 (PDB: 1PKG) human CSF1R, Tyr561 (PDB: 3LCD, homologous to cKIT site) human EPHA2, Tyr594 (PDB: 4PDO, two residues after the

PMID 17337445. Overview of all the structural information available in the PDB for UniProt: O00411 (Human DNA-directed RNA polymerase, mitochondrial (POLRMT))

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

glycoprotein B, as well as its structural homology to other viral fusion proteins. PDB: 3NW8​; Stampfer SD, Lou H, Cohen GH, Eisenberg RJ, Heldwein EE (December

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

Headings (MeSH) PDBe-KB provides an overview of all the structure information available in the PDB for Human Indoleamine 2,3-dioxygenase 1 Portal: Biology

structure. The structure of topo III (see below) bound to single-stranded DNA (pdb id = 1I7D) shows how the HTH and Toprim domain are coordinated about the

The Journal of Biological Chemistry. 265 (3): 1812–20. doi:10.2210/pdb2pnp/pdb. PMID 2104852. Williams SR, Gekeler V, McIvor RS, Martin DW (Feb 1987). "A

usually are also allergic to the bacterium Bacillus subtilis. Keratinase PDB: 1st2​; Bott R, Ultsch M, Kossiakoff A, Graycar T, Katz B, Power S (June

only one structure has been solved for this class of enzymes, with the PDB accession code 2A14. Tryptamine tryptamine+N-methyltransferase at the U.S

PMID 16641997. Overview of all the structural information available in the PDB for UniProt: P11488 (Guanine nucleotide-binding protein G(t) subunit alpha-1)

initiation factors Overview of all the structural information available in the PDB for UniProt: P41567 (Eukaryotic translation initiation factor 1) at the PDBe-KB

PMID 17068342. PDBe-KB provides an overview of all the structure information available in the PDB for Human Inositol monophosphatase 1 Portal: Biology

1021/bi201197p. PMC 3235957. PMID 22008035. PDBe-KB provides an overview of all the structure information available in the PDB for Human DNA polymerase nu v t e

1016/S0304-3835(03)00383-5. PMID 14568171. Overview of all the structural information available in the PDB for UniProt: Q9BYC5 (Human FUT8) at the PDBe-KB. v t e

typically used in folk medicine. Xanthine dehydrogenase Sodium molybdate PDB: 1FIQ​; Enroth C, Eger BT, Okamoto K, Nishino T, Nishino T, Pai EF (September

TBX3 protein dimer (cyan and green) complexed with DNA (brown) based on the PDB: 1h6f​ coordinates. Identifiers Symbol T-box Pfam PF00907 InterPro IPR001699

the PDB for UniProt: P11217 (Human muscle Glycogen phosphorylase) at the PDBe-KB. Overview of all the structural information available in the PDB for

PMID 16818733. Overview of all the structural information available in the PDB for UniProt: P12018 (Human Immunoglobulin iota chain) at the PDBe-KB. This

Medical Subject Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P00797 (Renin) at the PDBe-KB. Portal: Biology

General "hand" structure of a Group B Polymerase (PDB: 3NCI​)

PMID 17353931. PDBe-KB provides an overview of all the structure information available in the PDB for Human Methionine aminopeptidase 1 Portal: Biology v t e

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P63239 (Mouse Neuroendocrine convertase 1) at the PDBe-KB. Portal:

late 2007, 10 structures have been solved for this class of enzymes, with PDB accession codes 1B70, 1B7Y, 1EIY, 1JJC, 1PYS, 2AKW, 2ALY, 2AMC, 2CXI, and

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: Q00653 (Human Nuclear factor NF-kappa-B p100 subunit) at the

available in the PDB for UniProt: P28790 (3-ketoacyl-CoA thiolase) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: Q01167 (Forkhead box protein K2) at the PDBe-KB. This article

Subject Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: Q9BXR5 (Toll-like receptor 10) at the PDBe-KB. v t e

proteins is emerging from the latest high-resolution cryo-EM data (including PDB: 5AFI​). Ribosomal proteins are among the most highly conserved proteins

Interactive 3D Overview of all the structural information available in the PDB for UniProt: P04035 (3-hydroxy-3-methylglutaryl-coenzyme A reductase) at

Albumin binding prediction Overview of all the structural information available in the PDB for UniProt: P02768 (Human Serum albumin) at the PDBe-KB.

PMID 18639233. Overview of all the structural information available in the PDB for UniProt: Q96FJ2 (Dynein light chain 2, cytoplasmic) at the PDBe-KB. v

S2CID 7827573. Overview of all the structural information available in the PDB for UniProt: P30050 (Human 60S ribosomal protein L12) at the PDBe-KB. v t

available in the PDB for UniProt: Q6ZMJ4 (Human Interleukin-34) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: O76036 (Natural cytotoxicity triggering receptor 1) at the PDBe-KB

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

Enzymology. 611 (2): 251–68. doi:10.1016/0005-2744(80)90061-3. PMID 6766744. PDB: 1WX3​; Matoba Y, Kumagai T, Yamamoto A, Yoshitsu H, Sugiyama M (2006). "Crystallographic

PMID 2458299. Overview of all the structural information available in the PDB for UniProt: P14649 (Human Myosin light chain 6B (MYL6B)) at the PDBe-KB

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

1111/j.1432-1033.1983.tb07482.x. PMID 6406231. http://pdbdev.sdsc.edu:48346/pdb/molecules/pdb50_5.html[permanent dead link] Fructose-Bisphosphate+Aldolase

PMID 17389623. Overview of all the structural information available in the PDB for UniProt: P09601 (Heme oxygenase 1) at the PDBe-KB. Portal: Biology v

PDB Human ACHE genome location and ACHE gene details page in the UCSC Genome Browser. Overview of all the structural information available in the PDB

available in the PDB for UniProt: O43581 (Human Synaptotagmin-7) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:

the UROD gene. Uroporphyrinogen III decarboxylase is a homodimeric enzyme (PDB: 1URO​) that catalyzes the fifth step in heme biosynthesis, which corresponds

PDBe-KB provides an overview of all the structure information available in the PDB for Human Integrin alpha 2 "ITGA2". Cell Migration Gateway. Archived from

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

late 2007, 21 structures have been solved for this class of enzymes, with PDB accession codes 1I01, 1O5I, 1Q7B, 1Q7C, 1ULS, 1UZL, 1UZM, 1UZN, 2A4K, 2B4Q

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

Retrieved 2013-01-08. Overview of all the structural information available in the PDB for UniProt: P04040 (Catalase) at the PDBe-KB. Portal: Biology

PDB Human ACHE genome location and ACHE gene details page in the UCSC Genome Browser. Overview of all the structural information available in the PDB

late 2007, 3 structures have been solved for this class of enzymes, with PDB accession codes 1X54, 1X55, and 1X56. Davies MR, Marshall RD (1972). "Partial

4.271. PMID 10997877. PDBe-KB provides an overview of all the structure information available in the PDB for Human Kinesin-like protein KIF16B v t e

late 2007, two structures have been solved for this class of enzymes, with PDB accession codes 2H2N and 2H2U. GIBSON DM, AYENGAR P, SANADI DR (1955). "A

PMID 17353931. Overview of all the structural information available in the PDB for UniProt: P28738 (Mouse Kinesin heavy chain isoform 5C) at the PDBe-KB

PDBe-KB provides an overview of all the structure information available in the PDB for Human Eukaryotic translation initiation factor 5 (EIF5) Das S, Maiti

It was marketed under the brand name Zolyse. Trypsin PA clan of proteases PDB: 1CHG​; Freer ST, Kraut J, Robertus JD, Wright HT, Xuong NH (April 1970)

competitive inhibition with 6,7-dimethyl-8-ribityllumazine. Lumazine synthase PDB: 1i8d​; Liao DI, Wawrzak Z, Calabrese JC, Viitanen PV, Jordan DB (May 2001)

for yeast (Schizosaccharomyces pombe) FMO (PDB: 1VQW) and bacterial (Methylophaga aminisulfidivorans) FMO (PDB: 2XVH). The crystal structures are similar

PMID 8889548. Overview of all the structural information available in the PDB for UniProt: Q9NRX2 (39S ribosomal protein L17, mitochondrial) at the PDBe-KB

2018-02-11. Overview of all the structural information available in the PDB for UniProt: P82933 (Human 28S ribosomal protein S9, mitochondrial (MRPS9))

2018-02-11. Overview of all the structural information available in the PDB for UniProt: Q9Y399 (Human 28S ribosomal protein S2, mitochondrial (MRPS2))

Available structures PDB Ortholog search: PDBe RCSB

Center for Biotechnology Information, U.S. National Library of Medicine. PDB: 3ED4​; Patskovsky Y, Ozyurt S, Gilmore M, Chang S, Bain K, Wasserman S,

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P01189 (Pro-opiomelanocortin) at the PDBe-KB.  This article

peptide substrate in black and active site aspartate side chains in red. (PDB: 1KJF​) Identifiers Symbol Asp Pfam PF00026 InterPro IPR001461 PROSITE PDOC00128

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

PDBe-KB provides an overview of all the structure information available in the PDB for Human Macrophage metalloelastase (MMP12) Portal: Biology v t e

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

Available structures PDB Ortholog search: PDBe RCSB

H-Ras structure PDB 121p, surface colored by conservation in Pfam seed alignment: gold, most conserved; dark cyan, least conserved. Identifiers Symbol

PMID 16381901. Overview of all the structural information available in the PDB for UniProt: Q7L8C5 (Human Synaptotagmin-13 (SYT13)) at the PDBe-KB. v t

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

Vibrio cholerae cytolysin PDB: 3O44​ in the pore form is also heptameric; however, Staphylococcus aureus gamma-hemolysin PDB: 3B07​ reveals an octomeric

affect the plasma membrane Ca2+ pumps. Active transport#Counter-transport PDB Molecule of the Month Calcium pump nlm.nih.gov Strehler EE, Zacharias DA

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

Genome Browser. Overview of all the structural information available in the PDB for UniProt: O14672 (Disintegrin and metalloproteinase domain-containing

PMID 16341674. S2CID 69278. PDBe-KB provides an overview of all the structure information available in the PDB for Human 60S ribosomal protein L9 v t e

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P40424 (Human Pre-B-cell leukemia transcription factor 1) at

available in the PDB for UniProt: P35080 (Human Profilin-2) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt: Q9JJV2

available in the PDB for UniProt: Q92692 (Human Nectin-2) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt: P32507

available in the PDB for UniProt: P00970 (DNA ligase) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt: P18858

in the PDB for UniProt: Q9BZL1 (Human Ubiquitin-like protein 5) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:

PMID 17326138. Overview of all the structural information available in the PDB for UniProt: Q9BW19 (Human Kinesin-like protein KIFC1) at the PDBe-KB. v

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P00772 (Pancreatic elastase) at the PDBe-KB. This article incorporates

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P14653 (Homeobox protein Hox-B1) at the PDBe-KB. This article

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB 1uwkB:2-556 1w1uA:2-556 1uwlB:2-556

PMID 17190833. Overview of all the structural information available in the PDB for UniProt: O75822 (Human Eukaryotic translation initiation factor 3 subunit

F2R Alt. symbols TR; HTR; CF2R; PAR1; PAR-1 NCBI gene 2149 HGNC 3537 OMIM 187930 PDB 3BEF RefSeq NM_001992 UniProt P25116 Other data Locus Chr. 5 q13.3

PMID 18044744. Overview of all the structural information available in the PDB for UniProt: Q9NP97 (Dynein light chain roadblock-type 1) at the PDBe-KB

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

PMID 11279123. Overview of all the structural information available in the PDB for UniProt: P82675 (28S ribosomal protein S5, mitochondrial) at the PDBe-KB

available in the PDB for Human Hypoxia-inducible factor 1-alpha PDBe-KB provides an overview of all the structure information available in the PDB for Human

S2CID 4427026. Overview of all the structural information available in the PDB for UniProt: Q9BYD3 (39S ribosomal protein L4, mitochondrial) at the PDBe-KB

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

S2CID 12989946. Overview of all the structural information available in the PDB for UniProt: O43324 (Human Eukaryotic translation elongation factor 1 epsilon-1

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

Available structures PDB Human UniProt search: PDBe RCSB

Available structures PDB Ortholog search: PDBe RCSB

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

PMID 11279123. Overview of all the structural information available in the PDB for UniProt: P82675 (28S ribosomal protein S5, mitochondrial) at the PDBe-KB

Genome Browser. Overview of all the structural information available in the PDB for UniProt: P01011 (Human Alpha-1-antichymotrypsin) at the PDBe-KB. v t

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

inhibitors: M14.002 Overview of all the structural information available in the PDB for UniProt: P48052 (Human Carboxypeptidase A2) at the PDBe-KB. Portal: Biology

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

late 2007, 5 structures have been solved for this class of enzymes, with PDB accession codes 1GAX, 1IVS, 1IYW, 1WK9, and 1WKA. VARS Berg P, Bergmann FH

Spinocerebellar Ataxia Type 17 Interactive TBP Structure at massey.ac.nz PDB Molecule of the Month TATA-binding protein TATA-Box+Binding+Protein at the

PMID 15345747. Overview of all the structural information available in the PDB for UniProt: O15075 (Serine/threonine-protein kinase DCLK1) at the PDBe-KB

receptors that is under development for the treatment of cancer. Smoothened PDB: 1IJY​; Dann CE, Hsieh JC, Rattner A, Sharma D, Nathans J, Leahy DJ (July

PMID 11827452. Overview of all the structural information available in the PDB for UniProt: Q6NUK1 (Human Calcium-binding mitochondrial carrier protein

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P14653 (Homeobox protein Hox-B1) at the PDBe-KB. This article

Genome Browser. Overview of all the structural information available in the PDB for UniProt: P11274 (Human Breakpoint cluster region protein) at the PDBe-KB

Genome Browser. Overview of all the structural information available in the PDB for UniProt: P20702 (Integrin alpha-X) at the PDBe-KB. This article incorporates

Pathology Outlines. Overview of all the structural information available in the PDB for UniProt: P02786 (Human Transferrin receptor protein 1) at the PDBe-KB

S2CID 4427026. Overview of all the structural information available in the PDB for UniProt: Q9WUK2 (Mouse Eukaryotic translation initiation factor 4H) at

have been solved. These include one structure from Pseudomonas aeruginosa (PDB accession code 6G1O), one structure from Fusarium graminearum (5E9H), one

PMID 16303324. Overview of all the structural information available in the PDB for UniProt: P32320 (Cytidine deaminase) at the PDBe-KB. Portal: Biology

S2CID 12989946. Overview of all the structural information available in the PDB for UniProt: O43324 (Human Eukaryotic translation elongation factor 1 epsilon-1

Tests Online Overview of all the structural information available in the PDB for UniProt: P19440 (Gamma-glutamyltransferase 1) at the PDBe-KB. Portal:

(TCR), Mobipocket (MOBI), AZW, multi-page TIFF, text file (TXT), PalmDoc (PDB), Windows Metafile (EMF), Windows Metafile (WMF), bitmap (BMP), Graphics

covered your ass" has been erroneously linked to this PDB. This response, however, came from a separate PDB linked to Bin Laden from several months earlier

available in the PDB for UniProt: P52803 (Human Ephrin-A5) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt: O08543

an engineered antibody mimetic based on the structure of ankyrin repeats PDB: 1N11​; Michaely P, Tomchick DR, Machius M, Anderson RG (December 2002).

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: Q03405 (Human Urokinase plasminogen activator surface receptor)

substrate and active Arg 41 with bond distance of 3.3Å. Also displays the bond between Arg 41 and Glu72 holding the structure in place. PDB code: 2cw6

Aceruloplasminemia Overview of all the structural information available in the PDB for UniProt: P00450 (Human Ceruloplasmin) at the PDBe-KB. Portal: Biology

Genome Browser. Overview of all the structural information available in the PDB for UniProt: P01730 (T-cell surface glycoprotein CD4) at the PDBe-KB. This

Genome Browser. Overview of all the structural information available in the PDB for UniProt: P06126 (Human T-cell surface glycoprotein CD1a) at the PDBe-KB

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

Available structures PDB Human UniProt search: PDBe RCSB

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

Available structures PDB Ortholog search: PDBe RCSB

PMID 30322448. Overview of all the structural information available in the PDB for UniProt: P54868 (Human Hydroxymethylglutaryl-CoA synthase, mitochondrial)

Available structures PDB Ortholog search: PDBe RCSB

S2CID 20271498. Overview of all the structural information available in the PDB for UniProt: Q01813 (Human ATP-dependent 6-phosphofructokinase, platelet

PMID 11279069. Overview of all the structural information available in the PDB for UniProt: Q16540 (39S ribosomal protein L23, mitochondrial) at the PDBe-KB

structure of a bacterial ribonuclease P holoenzyme in complex with tRNA (yellow), showing metal ions involved in catalysis (pink spheres), PDB: 3Q1R​

1-phosphotransferase, pyrophosphate-fructose 6-phosphate phosphotransferase PFK PDB: 6PFK​; Schirmer T, Evans PR (January 1990). "Structural basis of the allosteric

C is shown in tan. (All from PDB: 2IAE​.) Superposed is the unbound form of the regulatory subunit A in gray (from PDB: 1B3U​), illustrating the flexibility

Available structures PDB Ortholog search: PDBe RCSB

PMID 8130193. PDBe-KB provides an overview of all the structure information available in the PDB for Human Triosephosphate isomerase Portal: Biology

1038/nature04727. PMID 16710414. Overview of all the structural information available in the PDB for UniProt: Q9UQ16 (Dynamin-3) at the PDBe-KB. v t e

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P62753 (Human 40S ribosomal protein S6) at the PDBe-KB.

Available structures PDB Ortholog search: PDBe RCSB

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

101 (9): 2613–2654. doi:10.1021/cr990139w. PMID 11749391. See page 2640 PDB: 1FXF​; Pan YH, Epstein TM, Jain MK, Bahnson BJ (January 2001). "Five coplanar

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

Organism Escherichia coli (str. K-12 substr. MG1655) Symbol dnaE Entrez 944877 PDB 2HNH RefSeq (Prot) NP_414726.1 UniProt P10443 Other data EC number 2.7.7

late 2007, 6 structures have been solved for this class of enzymes, with PDB accession codes 1AZY, 1OTP, 1TPT, 1UOU, 2J0F, and 2TPT. Thymidine phosphorylase

the Wayback Machine ) Overview of all the structural information available in the PDB for UniProt: P15018 (Leukemia inhibitory factor) at the PDBe-KB.

schizophrenia to neural tube birth defects such as spina bifida. Betaine PDB: 1UMY​; González B, Pajares MA, Martínez-Ripoll M, Blundell TL, Sanz-Aparicio

malate synthases, including those with PDB accession codes 2GQ3, 1D8C, 3OYX, 3PUG, 5TAO, 5H8M, 2JQX, 1P7T, and 1Y8B. PDB: 5T8G​; Huang HL, Krieger IV, Parai

London, England: Academic Press. ISBN 978-0-12-407243-5. OCLC 884590323. PDB: 4L6R​; Siu FY, He M, de Graaf C, Han GW, Yang D, Zhang Z, et al. (July 2013)

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

org/research/themes/user-studies/dipir.html "RCSB PDB: About the PDB Archive and the RCSB PDB". About the PDB Archive and the RCSB PDB. Retrieved 15 March 2018. Gramates

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P04141 (Granulocyte-macrophage colony-stimulating factor) at

PMID 12017191. PDBe-KB provides an overview of all the structure information available in the PDB for Human Protoporphyrinogen oxidase Portal: Biology

PMID 17353931. Overview of all the structural information available in the PDB for UniProt: Q14240 (Human Eukaryotic initiation factor 4A-II (EIF4A2)) at

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

Available structures PDB Ortholog search: PDBe RCSB

PMID 15345747. Overview of all the structural information available in the PDB for UniProt: O15075 (Serine/threonine-protein kinase DCLK1) at the PDBe-KB

PMID 8125298. Overview of all the structural information available in the PDB for UniProt: Q7L2H7 (Eukaryotic translation initiation factor 3 subunit M)

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

in the PDB for UniProt: Q13705 (Human Activin receptor type-2B) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:

Available structures PDB Ortholog search: PDBe RCSB

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

diagram of human prostacyclin synthase. Heme group visible at center. From PDB: 2IAG​ Identifiers EC no. 5.3.99.4 CAS no. 65802-86-0 Databases IntEnz IntEnz

the PDB for UniProt: P18146 (Human Early growth response protein 1) at the PDBe-KB. Overview of all the structural information available in the PDB for

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

protein (VAP-1) in some mammalian tissues. AOC1 AOC2 AOC3 Copper in health PDB: 3LOY​; Chang CM, Klema VJ, Johnson BJ, Mure M, Klinman JP, Wilmot CM (March

PMC 1847948. PMID 17353931. PDBe-KB provides an overview of all the structure information available in the PDB for Human 60S ribosomal protein L26 v t e

PMID 17427027. Overview of all the structural information available in the PDB for UniProt: Q9UKL4 (Gap junction delta-2 protein) at the PDBe-KB. v t e

PMID 16303324. Overview of all the structural information available in the PDB for UniProt: P32320 (Cytidine deaminase) at the PDBe-KB. Portal: Biology

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

Headings (MeSH) PDBe-KB provides an overview of all the structure information available in the PDB for Human High mobility group protein B3 (HMGB3) v t e

133/155, N terminal This domain has a 7-blade beta-propeller structure (PDB 1XKS). Identifiers Symbol Nucleoporin_N Pfam PF08801 InterPro IPR014908 SCOP2

Available structures PDB Ortholog search: PDBe RCSB

protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB 1tl9​ A:55-354; 1kxr​ B:55-354; 1tlo​ A:55-354;

S2CID 24913630. Overview of all the structural information available in the PDB for UniProt: P08637 (Low affinity immunoglobulin gamma Fc region receptor

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: O60741 (Human Potassium/sodium hyperpolarization-activated cyclic

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

Catalase Superoxide dismutase Glutathione reductase Selenium deficiency PDB: 1GP1​; Epp O, Ladenstein R, Wendel A (June 1983). "The refined structure

covered your ass" has been erroneously linked to this PDB. This response, however, came from a separate PDB linked to Bin Laden from several months earlier

(1): 70. doi:10.1038/s41467-017-00091-9. PMC 5503940. PMID 28694425. "RCSB PDB - 3EDL: Kinesin13-Microtubule Ring complex". RCSB Protein Data Bank. Retrieved

(backbone NH groups of Gln-154 and Leu-67) analogous to serine proteases. PDB: 1hlg​; Roussel A, Canaan S, Egloff MP, Rivière M, Dupuis L, Verger R, Cambillau

Human topoisomerase II beta in complex with DNA and mitoxantrone. PDB entry 4g0v. Detail showing mitoxantrone (spheres) intercalated with DNA.

PMID 15461802. Overview of all the structural information available in the PDB for UniProt: P17050 (Human Alpha-N-acetylgalactosaminidase (NAGA)) at the

more protein specific info) Overview of all the structural information available in the PDB for UniProt: P00784 (Papain) at the PDBe-KB. Portal: Biology

late 2007, 3 structures have been solved for this class of enzymes, with PDB accession codes 2BG1, 2UWX, and 2UWY. Mesleh MF, Rajaratnam P, Conrad M,

2Y6R COQ6; CYP450; MICAL1; MICAL2; MICAL2PV1; MICAL2PV2; MICAL3; ABM domain PDB: 2Y6Q​; Volkers G, Palm GJ, Weiss MS, Wright GD, Hinrichs W (April 2011)

PDBe-KB provides an overview of all the structure information available in the PDB for Human N-acetylgalactosamine-6-sulfatase This article incorporates text

PMID 18465786. S2CID 8154321. PDBe-KB provides an overview of all the structure information available in the PDB for Human Hepatoma-derived growth factor v t e

S2CID 259213466. [1] Apoptosis, Trail & Caspase 8 - The Proteolysis Map-animation PDB: 1D2Q​ TRAIL+Protein at the U.S. National Library of Medicine Medical Subject

late 2007, 21 structures have been solved for this class of enzymes, with PDB accession codes 1D2R, 1I6K, 1I6L, 1I6M, 1M83, 1MAU, 1MAW, 1MB2, 1O5T, 1R6T

PMID 18465786. S2CID 8154321. PDBe-KB provides an overview of all the structure information available in the PDB for Human Hepatoma-derived growth factor v t e

S2CID 259213466. [1] Apoptosis, Trail & Caspase 8 - The Proteolysis Map-animation PDB: 1D2Q​ TRAIL+Protein at the U.S. National Library of Medicine Medical Subject

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

Structure of the interface between SMC3 (blue) and SMC1 (green) (PDB 2WD5) from mice (Kurze et al., 2009)

late 2007, two structures have been solved for this class of enzymes, with PDB accession codes 1IUQ and 1K30. Currently 4 different proteins are assigned

134390 PDB Molecule of the Month Tissue factor—March 2006 PDBe-KB provides an overview of all the structure information available in the PDB for Human

their inhibitors: C02.006 Overview of all the structural information available in the PDB for UniProt: O14815 (Human Calpain-9 (CAPN9)) at the PDBe-KB.

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

Subject Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P00751 (Complement factor B) at the PDBe-KB. v t e

the UCSC Genome Browser. Overview of all the structural information available in the PDB for UniProt: P97291 (Mouse Cadherin-8) at the PDBe-KB. v t e

late 2007, 16 structures have been solved for this class of enzymes, with PDB accession codes 1FYJ, 1G59, 1J09, 1N75, 1N77, 1N78, 2CFO, 2CUZ, 2CV0, 2CV1

the PDB for UniProt: Q46901 (CRISPR system Cascade subunit CasA) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:

I. sakaiensis PETase (A0A0K8P6T7) in complex with HEMT, a PET analogue (PDB: 5XH3​). Identifiers EC no. 3.1.1.101 Alt. names PET hydrolase, poly(ethylene

S2CID 24913630. Overview of all the structural information available in the PDB for UniProt: P08637 (Low affinity immunoglobulin gamma Fc region receptor

2014-12-11 at the Wayback Machine PDBe-KB provides an overview of all the structure information available in the PDB for Human Integrin alpha-1 v t e

potential treatment to avoid chronic IH-induced cardiomyopathy. Phytochelatin PDB: 2KAK​; Peroza EA, Schmucki R, Güntert P, Freisinger E, Zerbe O (March 2009)

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: O60741 (Human Potassium/sodium hyperpolarization-activated cyclic

late 2007, 6 structures have been solved for this class of enzymes, with PDB accession codes 1IS2, 1W07, 2DDH, 2FON, 2IX5, and 2IX6. ACOX1 ACOX3 Kawaguchi

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

doi:10.1021/bi2009135. PMID 21770429. Overview of all the structural information available in the PDB for UniProt: P05113 (Interleukin-5) at the PDBe-KB.

Human topoisomerase II beta in complex with DNA and mitoxantrone. PDB entry 4g0v. Detail showing mitoxantrone (spheres) intercalated with DNA.

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

Interferon The molecular structure of human interferon-alpha (PDB: 1RH2​) Identifiers Symbol Interferons Pfam PF00143 InterPro IPR000471 SMART SM00076

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

PMC 1847948. PMID 17353931. PDBe-KB provides an overview of all the structure information available in the PDB for Human 60S ribosomal protein L34 v t e

at NCBI, NIH Overview of all the structural information available in the PDB for UniProt: P08174 (Complement decay-accelerating factor) at the PDBe-KB

PMID 12560567. PDBe-KB provides an overview of all the structure information available in the PDB for Human Cytosolic beta-glucosidase Portal: Biology v t e

proteins, which is then recorded and uploaded to the PDB. The protein structure file is downloaded from the PDB and opened in a molecular docking software. There

late 2007, 7 structures have been solved for this class of enzymes, with PDB accession codes 1RIQ, 1V4P, 1YFR, 1YFS, 1YFT, 1YGB, and 2E1B. HOLLEY RW,

2404438. PMID 17082780. Overview of all the structural information available in the PDB for UniProt: Q05195 (Max dimerization protein 1) at the PDBe-KB.

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

stability in cell lysate using the fast parallel proteolysis (FASTpp) assay. PDB: 3TMN​; Holden HM, Matthews BW (March 1988). "The binding of L-valyl-L-tryptophan

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

published in the "Molecule of the Month" series by the Protein Data Bank (PDB), an archive of protein structures. His illustrations are used as teaching

applications with short digestion times and highly acidic pH. Biology portal PDB: 1UTN​; Leiros HK, Brandsdal BO, Andersen OA, Os V, Leiros I, Helland R,

Genome Browser. Overview of all the structural information available in the PDB for UniProt: O95833 (Human Chloride intracellular channel protein 3 (CLIC3))

PDBe-KB provides an overview of all the structure information available in the PDB for Human Transcription factor E2F4 This article incorporates text from the

Hefutoxin family kappa-hefutoxin 1 PDB entry 1hp9 Identifiers Symbol Toxin_25 Pfam PF08095 InterPro IPR012630

S2CID 10007258. Overview of all the structural information available in the PDB for UniProt: O00139 (Human Kinesin-like protein KIF2A) at the PDBe-KB. v

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

PMID 14634123. Overview of all the structural information available in the PDB for UniProt: O75015 (Low affinity immunoglobulin gamma Fc region receptor

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

secondary structure of this domain is 5% alpha helical and 46% beta sheet. PDB: 3I97​; Jarvis A, Allerston CK, Jia H, Herzog B, Garza-Garcia A, Winfield

FactorBook PAX5 Overview of all the structural information available in the PDB for UniProt: Q02548 (Paired box protein Pax-5) at the PDBe-KB. This article

PMID 12706105. Overview of all the structural information available in the PDB for UniProt: Q8TCC3 (Human 39S ribosomal protein L30, mitochondrial (MRPL30))

active enzyme composed of the catalytic domain and the hemopexin-like domain PDB: 1PEX​. Although the actual mechanism has not been described, the hemopexin

late 2007, five structures have been solved for this class of enzymes, with PDB accession codes 1WP4, 2CVZ, 2GF2, 2H78, and 2I9P. GRCh38: Ensembl release

late 2007, 13 structures have been solved for this class of enzymes, with PDB accession codes 1SER, 1SES, 1SET, 1SRY, 1WLE, 2CIM, 2CJ9, 2CJA, 2CJB, 2DQ0

PDBe-KB provides an overview of all the structure information available in the PDB for Mlouse Galactocerebrosidase Portal: Biology v t e GRCh38: Ensembl release

Available structures PDB Ortholog search: PDBe RCSB

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

in the PDB for UniProt: Q71U36 (Human Tubulin alpha-1A chain) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:

Subject Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P00751 (Complement factor B) at the PDBe-KB. v t e

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

I. sakaiensis PETase (A0A0K8P6T7) in complex with HEMT, a PET analogue (PDB: 5XH3​). Identifiers EC no. 3.1.1.101 Alt. names PET hydrolase, poly(ethylene

published in the "Molecule of the Month" series by the Protein Data Bank (PDB), an archive of protein structures. His illustrations are used as teaching

active enzyme composed of the catalytic domain and the hemopexin-like domain PDB: 1PEX​. Although the actual mechanism has not been described, the hemopexin

134390 PDB Molecule of the Month Tissue factor—March 2006 PDBe-KB provides an overview of all the structure information available in the PDB for Human

PMID 12706105. Overview of all the structural information available in the PDB for UniProt: Q8TCC3 (Human 39S ribosomal protein L30, mitochondrial (MRPL30))

protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB 1u3cA:214-492 1u3dA:214-492 1iquA:176-418 1iqrA:176-418

Structure of phosphoglucomutase in the protein data bank http://www.rcsb.org/pdb/explore.do?structureId=1LXT Rose IA, Warms JV, Kaklij G (May 1975). "A specific

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: Q9UK17 (Potassium voltage-gated channel subfamily D member 3)

together politicians from the previous Party of German-speaking Belgians (PDB) and Parteilos Jugendliche Unabhängige (PJU) movement. The party was formed

Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary

2.143. PMID 10819331. Overview of all the structural information available in the PDB for UniProt: Q63HK5 (Teashirt homolog 3) at the PDBe-KB. v t e

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

PMID 12560567. PDBe-KB provides an overview of all the structure information available in the PDB for Human Cytosolic beta-glucosidase Portal: Biology v t e

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

(DSSP) for assigning secondary-structure classes (helix/strand/coil) to PDB structures, against which the predictions are benchmarked. Accurate secondary-structure

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

available in the PDB for UniProt: P18206 (Human Vinculin) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt: Q64727

deacetylase Catalytic domain of human histone deacetylase 4 with bound inhibitor. PDB rendering based on 2vqj. Identifiers EC no. 3.5.1.98 CAS no. 9076-57-7 Databases

applications with short digestion times and highly acidic pH. Biology portal PDB: 1UTN​; Leiros HK, Brandsdal BO, Andersen OA, Os V, Leiros I, Helland R,

PMID 17353931. Overview of all the structural information available in the PDB for UniProt: O76003 (Human Glutaredoxin-3 (GLRX3)) at the PDBe-KB. v t e

PMC 2173148. PMID 12196509. Overview of all the structural information available in the PDB for UniProt: Q8NFH5 (Human Nucleoporin NUP35) at the PDBe-KB. v t e

(MeSH) PDBe-KB provides an overview of all the structure information available in the PDB for Human Inositol polyphosphate 5-phosphatase OCRL-1 v t e

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO

PDBe-KB provides an overview of all the structure information available in the PDB for Human Toll-like receptor 1 (TLR1) This article incorporates text from

Nirmatrelvir bound to 3CL PDB: 7RFW​

available in the PDB for UniProt: Q9Y2C9 (Human Toll-like receptor 6) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:

S2CID 7827573. PDBe-KB provides an overview of all the structure information available in the PDB for Human Origin recognition complex (ORC6) v t e

Available structures PDB Ortholog search: PDBe RCSB

- MCEE gene & protein". www.uniprot.org. Europe, Protein Data Bank in. "PDB 3rmu structure summary ‹ Protein Data Bank in Europe (PDBe) ‹ EMBL-EBI".

late 2007, five structures have been solved for this class of enzymes, with PDB accession codes 1WP4, 2CVZ, 2GF2, 2H78, and 2I9P. GRCh38: Ensembl release

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: O15350 (Tumor protein p73) at the PDBe-KB. Kaghad M, Bonnet

Available structures PDB Ortholog search: PDBe RCSB

Genome Browser. Overview of all the structural information available in the PDB for UniProt: Q9UGN4 (Human CMRF35-like molecule 8 (CD300A)) at the PDBe-KB

Headings (MeSH) Overview of all the structural information available in the PDB for UniProt: P31274 (Homeobox protein Hox-C9) at the PDBe-KB. This article

Genome Browser. Overview of all the structural information available in the PDB for UniProt: Q13555 (Calcium/calmodulin-dependent protein kinase type II

21589-98 (2009). Overview of all the structural information available in the PDB for UniProt: A8MYU2 (Potassium channel subfamily U member 1) at the PDBe-KB

PMID 20509867. Overview of all the structural information available in the PDB for UniProt: Q9BVJ7 (Human Dual specificity protein phosphatase 23 (DUSP23))

"Phenylalanine Hydroxylase". Molecule of the Month. RCSB Protein Data Bank (PDB). Archived from the original on 22 February 2018. Regier DS, Greene CL (5

FactorBook PAX5 Overview of all the structural information available in the PDB for UniProt: Q02548 (Paired box protein Pax-5) at the PDBe-KB. This article

IntEnz IntEnz view BRENDA BRENDA entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum

entry ExPASy NiceZyme view KEGG KEGG entry MetaCyc metabolic pathway PRIAM profile PDB structures RCSB PDB PDBe PDBsum Gene Ontology AmiGO / QuickGO