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searching for Bacterial genome 153 found (163 total)

Myxobacteria (1,297 words) [view diff] exact match in snippet view article find links to article

One species of myxobacteria, Minicystis rosea, has the largest known bacterial genome with over 16 million nucleotides. The second largest is another myxobacteria

CFP-10 (465 words) [view diff] exact match in snippet view article find links to article

complex with ESAT-6. Both genes are expressed from the RD1 region of the bacterial genome and play a key role in the virulence of the infection. 10-kDa culture

BASys (577 words) [view diff] exact match in snippet view article find links to article

clickable and fully zoomable circular maps of each input chromosome. These bacterial genome maps are generated used a program called CGView (Circular Genome Viewer)

Hamilton O. Smith (638 words) [view diff] exact match in snippet view article find links to article

and a team at The Institute for Genomic Research sequenced the first bacterial genome, that of Haemophilus influenzae. H. influenza was the same organism

F-plasmid (1,219 words) [view diff] exact match in snippet view article find links to article

episome integrated into the bacterial genome. F+ bacteria possess F factor as a plasmid independent of the bacterial genome. The F plasmid contains only

Totally drug-resistant tuberculosis (632 words) [view diff] exact match in snippet view article find links to article

vitro testing. TDR-TB has resulted from further mutations within the bacterial genome to confer resistance, beyond those seen in XDR- and MDR-TB. Development

Sorangium cellulosum (788 words) [view diff] exact match in snippet view article find links to article

unusually-large genome of 13,033,779 base pairs, making it the largest bacterial genome sequenced to date by roughly 4 Mb. S. cellulosum is found in soils

100K Pathogen Genome Project (501 words) [view diff] exact match in snippet view article find links to article

genomes of 100,000 infectious microorganisms to create a database of bacterial genome sequences for use in public health, outbreak detection, and bacterial

Mycoplasma laboratorium (3,650 words) [view diff] exact match in snippet view article find links to article

filed patents for the Mycoplasma laboratorium genome (the "minimal bacterial genome") in the U.S. and internationally in 2006. The ETC group, a Canadian

Vibrio regulatory RNA of OmpA (381 words) [view diff] exact match in snippet view article find links to article

transposon mutant libraries of Vibrio cholerae and its location within the bacterial genome was mapped to the intergenic region between genes VC1741 and VC1743

GeneMark (1,484 words) [view diff] exact match in snippet view article find links to article

gene prediction tool for annotation of the first completely sequenced bacterial genome of Haemophilus influenzae, and in 1996 for the first archaeal genome

Site-specific recombination (2,034 words) [view diff] exact match in snippet view article find links to article

are employed naturally in a variety of cellular processes, including bacterial genome replication, differentiation and pathogenesis, and movement of mobile

Transfer gene (596 words) [view diff] exact match in snippet view article find links to article

in question, another plasmid in the same host cell, or even in the bacterial genome. The tra genes encode proteins which are useful for the propagation

George Weinstock (707 words) [view diff] exact match in snippet view article find links to article

of Texas Health Science Center at Houston, he led one of the first bacterial genome projects, collaborating with The Institute for Genomic Research to

Mycoplasma genitalium (4,970 words) [view diff] exact match in snippet view article find links to article

cellular transport, and energy metabolism. It was the second complete bacterial genome ever sequenced, after Haemophilus influenzae. Later data from KEGG

GLIMMER (2,898 words) [view diff] exact match in snippet view article find links to article

designed by Art Delcher, Simon Kasif and Steven Salzberg and applied to bacterial genome annotation in collaboration with Owen White. First Version of GLIMMER

Gateway Technology (1,359 words) [view diff] exact match in snippet view article find links to article

recombination between the attP and attB sites, the phage integrates into the bacterial genome flanked by two new recombination sites (attLeft and attRight). The

Listeria monocytogenes non-coding RNA (459 words) [view diff] exact match in snippet view article find links to article

monocytogenes genome and the location of these non-coding RNAs within the bacterial genome was confirmed by RACE (rapid amplification of cDNA ends) analysis.

Polony sequencing (1,771 words) [view diff] exact match in snippet view article find links to article

variable application including BAC (bacterial artificial chromosome) and bacterial genome resequencing, as well as SAGE (serial analysis of gene expression)

Secondary chromosome (4,613 words) [view diff] exact match in snippet view article find links to article

chromid is "chromosome II" of Paracoccus denitrificans PD1222. In a bacterial genome, the main chromosome will always be the largest replicon, followed

CTXφ bacteriophage (837 words) [view diff] exact match in snippet view article find links to article

in a virion from outside the bacterium. While integrated into the bacterial genome, CTX prophages are found on each of the two chromosomes (in the O1

Hfr cell (613 words) [view diff] exact match in snippet view article find links to article

Hfr strain independently. An Hfr cell can transfer a portion of the bacterial genome. Despite being integrated into the chromosomal DNA of the bacteria

Stop codon (2,821 words) [view diff] exact match in snippet view article find links to article

genomic-TSSR value of genetically related bacteria may suggest that bacterial genome expansion is limited by their unique stop-signals bias of that bacterial

Multicopy single-stranded DNA (1,943 words) [view diff] exact match in snippet view article find links to article

Lampson BC, Inouye M, Inouye S (2005). "Retrons, msDNA, and the bacterial genome" (PDF). Cytogenetic and Genome Research. 110 (1–4): 491–9. doi:10.1159/000084982

"Tropheryma" (539 words) [view diff] exact match in snippet view article find links to article

the name "Tropheryma whippelii" was proposed after sections of the bacterial genome were sequenced. The name was changed to "Tropheryma whipplei" in 2001

Massive parallel sequencing (3,056 words) [view diff] exact match in snippet view article find links to article

(September 2005). "Accurate multiplex polony sequencing of an evolved bacterial genome". Science. 309 (5741): 1728–1732. Bibcode:2005Sci...309.1728S. doi:10

Phasevarion (1,582 words) [view diff] exact match in snippet view article find links to article

methyltransferase expression results in differential methylation throughout the bacterial genome, leading to variable expression of multiple genes through epigenetic

Phage typing (1,620 words) [view diff] exact match in snippet view article find links to article

immediately lyse the cell. The phage is instead integrated into the bacterial genome as a prophage during lysogenization, which protects the cell from being

Replicon (genetics) (634 words) [view diff] case mismatch in snippet view article

OCLC 824087979. diCenzo GC, Finan TM (September 2017). "The Divided Bacterial Genome: Structure, Function, and Evolution". Microbiology and Molecular Biology

In silico (1,440 words) [view diff] exact match in snippet view article find links to article

silico has been used in white papers written to support the creation of bacterial genome programs by the Commission of the European Community. The first referenced

Peter G. Schultz (2,796 words) [view diff] exact match in snippet view article find links to article

work is to culture the yeast-bacteria hybrids and see whether the bacterial genome evolves to increase the mutual benefits of its chemical interactions

Retron (796 words) [view diff] exact match in snippet view article find links to article

tools. Lampson BC, Inouye M, Inouye S (2005). "Retrons, msDNA, and the bacterial genome" (PDF). Cytogenet Genome Res. 110 (1–4): 491–499. doi:10.1159/000084982

Engineering biology (453 words) [view diff] exact match in snippet view article find links to article

... & Pelletier, J. F. (2016). Design and synthesis of a minimal bacterial genome. Science, 351(6280), aad6253. doi:10.1126/science.aad6253 Klabukov

KEGG (1,751 words) [view diff] exact match in snippet view article find links to article

was initiated in 1995, the first report of the completely sequenced bacterial genome was published. Since then all published complete genomes are accumulated

Prophage (1,449 words) [view diff] exact match in snippet view article find links to article

PMID 27258950. Menouni R, Hutinet G, Petit MA, Ansaldi M (January 2015). "Bacterial genome remodeling through bacteriophage recombination". FEMS Microbiology

RecA (1,428 words) [view diff] exact match in snippet view article find links to article

Taguchi, Hisataka; Akamatsu, Takashi (March 2006). "Fate of transforming bacterial genome following incorporation into competent cells of Bacillus subtilis:

Sequencing by ligation (636 words) [view diff] case mismatch in snippet view article find links to article

Church (2005). "Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome". Science. 309 (5741): 1728–1732. Bibcode:2005Sci...309.1728S. doi:10

Two-component regulatory system (2,790 words) [view diff] exact match in snippet view article find links to article

chemoattractants, pH and more. The average number of two-component systems in a bacterial genome has been estimated as around 30, or about 1–2% of a prokaryote's genome

Phrap (878 words) [view diff] exact match in snippet view article find links to article

widely used for many different sequence assembly projects, including bacterial genome assemblies and EST assemblies. Phrap was written as a command line

Mycoplasma mycoides (831 words) [view diff] exact match in snippet view article find links to article

Karas, Bogumil J. (2016-03-25). "Design and synthesis of a minimal bacterial genome". Science. 351 (6280): aad6253. Bibcode:2016Sci...351.....H. doi:10

Expanded genetic code (9,132 words) [view diff] exact match in snippet view article find links to article

Escherichia coli, by reducing the natural number of 64 codons in the bacterial genome to 61 codons (eliminating two out of the six codons coding for serine

Multilocus sequence typing (3,452 words) [view diff] exact match in snippet view article find links to article

made it possible to obtain sequence information across the entire bacterial genome at relatively modest cost and effort, and MLST can now be assigned

Bacteriophage Mu (781 words) [view diff] exact match in snippet view article find links to article

that Mu can insert randomly and prolifically throughout an entire bacterial genome, creating stable insertions. He also demonstrates that the reversion

Philippe Horvath (397 words) [view diff] exact match in snippet view article find links to article

bacteriophages---viruses that infect bacteria. Horvath explored sections in the bacterial genome with clustered regularly interspaced short palindromic repeats, both

HslVU (1,222 words) [view diff] exact match in snippet view article find links to article

proteasomes. Both proteins are encoded on the same operon within the bacterial genome. Unlike many eukaryotic proteasomes, which have several different peptide

Philippe Horvath (397 words) [view diff] exact match in snippet view article find links to article

bacteriophages---viruses that infect bacteria. Horvath explored sections in the bacterial genome with clustered regularly interspaced short palindromic repeats, both

Phylogenetics (6,944 words) [view diff] exact match in snippet view article find links to article

structural characteristics of phylogenetic trees generated from simulated bacterial genome evolution across multiple types of contact networks. By examining simple

Genomics (7,643 words) [view diff] exact match in snippet view article find links to article

sequences offers insights into the role of prophages in shaping the bacterial genome: Overall, this method verified many known bacteriophage groups, making

Artificial life (2,308 words) [view diff] exact match in snippet view article find links to article

Escherichia coli, by reducing the natural number of 64 codons in the bacterial genome to 59 codons instead, in order to encode 20 amino acids. How does life

RsaOG (364 words) [view diff] exact match in snippet view article find links to article

2009). "Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles". Genome Res. 19 (6): 1084–1092. doi:10

Maynard Olson (710 words) [view diff] exact match in snippet view article find links to article

Neary, Walter (August 30, 2000). "Scientists sequence the largest bacterial genome yet". washington.edu. Retrieved March 15, 2021. "Maynard Olson | Gruber

Pathogen (4,224 words) [view diff] exact match in snippet view article find links to article

their genome into bacterial cells, inserting those genes into the bacterial genome, and hijacking the bacteria's machinery to produce hundreds of new

Illegitimate recombination (1,000 words) [view diff] exact match in snippet view article find links to article

insert other short genetic sequences into other locations within the bacterial genome often leading to a change in the expression of neighboring genes. Oftentimes

ATUM (985 words) [view diff] exact match in snippet view article find links to article

company supplied some of the DNA stretches used to create a synthetic bacterial genome. Dan Rather Reports included DNA2.0 in their episode on synthetic biology

Plasmid partition system (2,276 words) [view diff] exact match in snippet view article find links to article

(2017). "Surfing on protein waves: proteophoresis as a mechanism for bacterial genome partitioning". Physical Review Letters. 119 (28101): 028101. arXiv:1702

Facilitated diffusion (1,800 words) [view diff] exact match in snippet view article find links to article

Bauer & Metzler (2013) therefore carried out an experiment using a bacterial genome in which they investigated the average time for TF – DNA binding to

Filamentous bacteriophage (3,596 words) [view diff] exact match in snippet view article find links to article

misspelled as Cflt), was shown in 1987 to integrate into the host bacterial genome, and further such temperate filamentous phages have since been reported

Xanthomonas campestris (1,714 words) [view diff] exact match in snippet view article find links to article

(secreted by the type III secretion system), for example. The genes in the bacterial genome that are responsible for such interactions include avirulence (avr)

Protospacer adjacent motif (1,421 words) [view diff] exact match in snippet view article find links to article

being targeted and destroyed by the CRISPR-associated nuclease. In a bacterial genome, CRISPR loci contain "spacers" (viral DNA inserted into a CRISPR locus)

DNA sequencing (14,917 words) [view diff] case mismatch in snippet view article find links to article

Church GM (2005). "Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome". Science. 309 (5741): 1728–32. Bibcode:2005Sci...309.1728S. doi:10

Bacterial conjugation (2,419 words) [view diff] exact match in snippet view article find links to article

promoting DNA transfer are in the plasmid genome rather than in the bacterial genome, it has been argued that conjugative bacterial gene transfer, as it

Bacteriophage Qbeta (1,003 words) [view diff] exact match in snippet view article find links to article

encoded by the phage, while the other three subunits are encoded by the bacterial genome: alpha subunit (ribosomal protein S1), gamma subunit (EF-Tu), and delta

Prokaryote (4,783 words) [view diff] exact match in snippet view article find links to article

Saito Y, Taguchi H, Akamatsu T (March 2006). "Fate of transforming bacterial genome following incorporation into competent cells of Bacillus subtilis:

Acaryochloris marina (984 words) [view diff] exact match in snippet view article find links to article

cyanobacterium). Its genome was first sequenced in 2008, revealing a large bacterial genome of 8.3 Mb with nine plasmids. The name Acaryochloris is a combination

Lysogenic cycle (2,137 words) [view diff] exact match in snippet view article find links to article

known as induction. During induction, prophage DNA is excised from the bacterial genome and is transcribed and translated to make coat proteins for the virus

Perchlorate reductase (533 words) [view diff] exact match in snippet view article find links to article

and chlorite dismutase gene are typically located together in the bacterial genome. Iain C. Clark; Ryan A. Melnyk; Anna Engelbrektson; John D. Coates

Michael Fischbach (965 words) [view diff] exact match in snippet view article find links to article

the process of identifying biosynthetic genes for small molecules in bacterial genome sequences. With Marnix Medema, he co-developed a second algorithm for

Burkholderia mallei (2,962 words) [view diff] case mismatch in snippet view article find links to article

Y, Nierman WC, Kim HS (2010). Ochman H (ed.). "The Early Stage of Bacterial Genome-Reductive Evolution in the Host". PLOS Pathogens. 6 (5): e1000922.

Medical microbiology (3,977 words) [view diff] exact match in snippet view article find links to article

1995 a team at The Institute for Genomic Research sequenced the first bacterial genome; Haemophilus influenzae. A few months later, the first eukaryotic genome

Borrelia miyamotoi (1,174 words) [view diff] exact match in snippet view article find links to article

obligate parasitic bacterium with a spiraling corkscrew shape. The bacterial genome is physically made up of one linear chromosome, twelve linear plasmids

Samir K. Brahmachari (1,077 words) [view diff] exact match in snippet view article find links to article

claims regarding the first mapping of the Mycobaterium tuberculosis bacterial genome and the identification of a potential anti-tuberculosis drug candidate

Umu Chromotest (889 words) [view diff] exact match in snippet view article find links to article

in a 96-well microplate. If genotoxic lesions are produced in the bacterial genome, the umuC gene is induced as part of the general SOS response. The

ParABS system (780 words) [view diff] exact match in snippet view article find links to article

(2017). "Surfing on protein waves: proteophoresis as a mechanism for bacterial genome partitioning". Physical Review Letters. 119 (28101): 028101. arXiv:1702

PTS Galactitol Family (331 words) [view diff] exact match in snippet view article find links to article

Jonathan (Apr 1995). "Novel phosphotransferase system genes revealed by bacterial genome analysis--a gene cluster encoding a unique Enzyme I and the proteins

Minimal genome (5,755 words) [view diff] exact match in snippet view article find links to article

minimum bacterial genome tend to be substantially more related to proteins found in archaea and eukaryotes compared to the average gene in the bacterial genome

Genome evolution (4,951 words) [view diff] exact match in snippet view article find links to article

provided by transduction whereby bacteriophages introduce new DNA into a bacterial genome. The main mechanism of sexual interaction is natural genetic transformation

Response regulator (1,447 words) [view diff] exact match in snippet view article find links to article

archaeal genomes. The number of two-component systems present in a bacterial genome is highly correlated with genome size as well as ecological niche;

Diphtheria (5,621 words) [view diff] exact match in snippet view article find links to article

tox− (e.g., corynephage γ). The tox gene becomes integrated into the bacterial genome. The chromosome of C. diphtheriae has two different but functionally

Jörg Hacker (800 words) [view diff] exact match in snippet view article find links to article

coining the term "pathogenicity island" to describe a region of a bacterial genome that encodes disease causing traits. University of Würzburg, Member

George Church (geneticist) (6,751 words) [view diff] exact match in snippet view article

Harvard laboratory to Genome Therapeutics Corp. resulted in the first bacterial genome sequence and first commercial genome (the human pathogen Helicobacter

Bacteriocin (3,540 words) [view diff] exact match in snippet view article find links to article

However, since the advent of the genomic era, the availability of the bacterial genome sequences has revolutionized the approach to identifying bacteriocins

Rsa RNA (1,363 words) [view diff] exact match in snippet view article find links to article

2009). "Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles". Genome Research. 19 (6): 1084–1092. doi:10

Evolution of biological complexity (3,714 words) [view diff] case mismatch in snippet view article find links to article

Pathogenic, Plastic, and Sexual while Living with a Nearly Minimal Bacterial Genome". PLOS Genet. 3 (5): e75. doi:10.1371/journal.pgen.0030075. PMC 1868952

Borrelia burgdorferi (4,069 words) [view diff] exact match in snippet view article find links to article

Dodson RJ, Haft D, Hickey E, Gwinn M, White O, Fraser CM (2000). "A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs

2,6-Diaminopurine (1,394 words) [view diff] exact match in snippet view article find links to article

and PurZ are sufficient to replace some occurrence of A by Z in the bacterial genome of E. coli; expression of this system is toxic to the cell. The structures

Marlene Belfort (1,672 words) [view diff] exact match in snippet view article find links to article

subsequently showed that the introns move to different places within a bacterial genome and she was able to determine the mechanism guiding this movement of

Reductive evolution (1,125 words) [view diff] exact match in snippet view article find links to article

Ulrich RL, Yu Y, Nierman WC, Kim HS (May 2010). "The early stage of bacterial genome-reductive evolution in the host". PLOS Pathogens. 6 (5): e1000922.

Non-coding DNA (4,774 words) [view diff] exact match in snippet view article find links to article

genes) and regulatory sequences, which means that almost all of the bacterial genome has a function. The amount of coding DNA in eukaryotes is usually a

Antibiotic resistance in gonorrhea (1,703 words) [view diff] exact match in snippet view article find links to article

ribosomal subunit of bacterial cells, keeping transcription of the bacterial genome from occurring. Tetracyclines are bacteriostatic, which means that

Chris Higgins (academic) (1,610 words) [view diff] exact match in snippet view article

"Repetitive extragenic palindromic sequences: A major component of the bacterial genome". Cell. 37 (3): 1015–1026. doi:10.1016/0092-8674(84)90436-7. PMID 6378385

Alexander Gorban (1,973 words) [view diff] exact match in snippet view article find links to article

Gorban A.N., Zinovyev A. Y., The mystery of two straight lines in bacterial genome statistics, Bulletin of Mathematical Biology 69 (2007), 2429–2442.

Robert E. W. Hancock (1,351 words) [view diff] exact match in snippet view article find links to article

involvement in sequencing the genome of Pseudomonas, only the 4th bacterial genome to be sequenced. Hancock's research identified new mechanisms of antibiotic

Global microbial identifier (1,273 words) [view diff] exact match in snippet view article find links to article

inactive as of November 2024 (link) A summary of genomic databases. "Bacterial genome databases". WGS projects info by EBI. "WGS projects". Genome Browser

Optical mapping (2,102 words) [view diff] exact match in snippet view article find links to article

(1999): 1558–62. Nagarajan, N., et al. "Scaffolding and validation of bacterial genome assemblies using optical restriction maps." Bioinformatics 24.10 (2008):1229–35

Species (10,545 words) [view diff] exact match in snippet view article find links to article

Poudel, Suresh; Ussery, David W. (2015). "Insights from 20 years of bacterial genome sequencing". Functional & Integrative Genomics. 15 (2): 141–161. doi:10

Bacillus subtilis (6,270 words) [view diff] exact match in snippet view article find links to article

Saito Y, Taguchi H, Akamatsu T (March 2006). "Fate of transforming bacterial genome following incorporation into competent cells of Bacillus subtilis:

Mating system (4,718 words) [view diff] exact match in snippet view article find links to article

S2CID 30118947. Saito Y, Taguchi H, Akamatsu T (2006). "Fate of transforming bacterial genome following incorporation into competent cells of Bacillus subtilis:

Splitfin flashlightfish (1,449 words) [view diff] exact match in snippet view article find links to article

known lab-cultivated populations of the bacteria. The size of the bacterial genome is relatively small compared to others in the Vibrionaceae genus.

Histone-like nucleoid-structuring protein (1,670 words) [view diff] exact match in snippet view article find links to article

H-NS restructures the genome into microdomains in vivo. While the bacterial genome is split into four different macrodomains including Ori and Ter (macrodomain

DNA supercoil (4,316 words) [view diff] exact match in snippet view article find links to article

different nucleoid associated proteins (NAPs) that further organize the bacterial genome. For example, Dps from E. coli has been shown to bind supercoiled DNA

P1 phage (2,009 words) [view diff] exact match in snippet view article find links to article

is a lysogen. As there is usually only one copy of the plasmid per bacterial genome, the plasmid stands a high chance of not being passed to both daughter

Hypochlorous acid (5,441 words) [view diff] exact match in snippet view article find links to article

protein synthesis, and closely parallels loss of viability. During bacterial genome replication, the origin of replication (oriC in E. coli) binds to proteins

David W. Deamer (1,087 words) [view diff] exact match in snippet view article find links to article

December 2015. Loman, N.J.; Quick, J.; Simpson, J.T. (2015). "A complete bacterial genome assembled de novo using only nanopore sequencing data". Nature Methods

Bacteriophage (8,657 words) [view diff] exact match in snippet view article find links to article

host bacterium while they are dormant by adding new functions to the bacterial genome, in a phenomenon called lysogenic conversion. Examples are the conversion

Victor V. Solovyev (704 words) [view diff] exact match in snippet view article find links to article

scientific publications, according to Google scholar data. The Fgenesb bacterial genome annotation pipeline based on Markov chain models was significantly

Bioinformatics (8,447 words) [view diff] exact match in snippet view article find links to article

by The Institute for Genomic Research (TIGR) to sequence the first bacterial genome, Haemophilus influenzae) generates the sequences of many thousands

Grete Kellenberger-Gujer (1,433 words) [view diff] exact match in snippet view article find links to article

repression of phage multiplication and incorporation of the prophage in the bacterial genome". Virology. 19 (4): 450–460. doi:10.1016/0042-6822(63)90038-2. ISSN 0042-6822

Genetic transformation (6,762 words) [view diff] exact match in snippet view article find links to article

Saito Y, Taguchi H, Akamatsu T (March 2006). "Fate of transforming bacterial genome following incorporation into competent cells of Bacillus subtilis:

2 base encoding (2,042 words) [view diff] case mismatch in snippet view article find links to article

Shendure et al. (2005) Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome. Science 309(5741), 1728 - 1732 Sequence and structural variation in

Gene (12,843 words) [view diff] exact match in snippet view article find links to article

Ellisman MH, et al. (March 2016). "Design and synthesis of a minimal bacterial genome". Science. 351 (6280): aad6253. Bibcode:2016Sci...351.....H. doi:10

Gas vesicle (2,713 words) [view diff] exact match in snippet view article find links to article

exposure of the bacterial surface to UV radiation, which can damage the bacterial genome. Accumulation of glucose, maltose, or sucrose in Haloferax mediterranei

Y chromosome (8,152 words) [view diff] exact match in snippet view article find links to article

contamination in microbial sequencing projects. As a result, the NCBI RefSeq bacterial genome database mistakenly includes some Y chromosome data. G-banding ideograms

Antibiotic (14,742 words) [view diff] exact match in snippet view article find links to article

strains. For example, an antibiotic target may be absent from the bacterial genome. Acquired resistance results from a mutation in the bacterial chromosome

Genome instability (4,560 words) [view diff] case mismatch in snippet view article find links to article

immunoglobulin gene locus through NHEJ repair. Darmon, E; Leach, DRF (2014). "Bacterial Genome Instability". Microbiol. Mol. Biol. Rev. 78 (1): 1–39. doi:10.1128/MMBR

Vancomycin (8,173 words) [view diff] exact match in snippet view article find links to article

The three peptide syntheses are at the start of the region of the bacterial genome linked with antibiotic biosynthesis, and span 27 kb. β-hydroxytyrosine

Site-specific recombinase technology (3,200 words) [view diff] exact match in snippet view article find links to article

by bacteriophage λ, enabling the integration of phage DNA into the bacterial genome. A common feature of this class is a conserved tyrosine nucleophile

Bacterial one-hybrid system (1,925 words) [view diff] exact match in snippet view article find links to article

here is that competition created by binding sites elsewhere in the bacterial genome may limit the signal that can be realized from a single binding site

Aphid (11,371 words) [view diff] case mismatch in snippet view article find links to article

Wilcox, Jennifer L. (2005). "Regulation of Transcription in a Reduced Bacterial Genome: Nutrient-Provisioning Genes of the Obligate Symbiont Buchnera aphidicola"

Gene transfer agent (2,692 words) [view diff] exact match in snippet view article find links to article

there is one 17.8 kb area with phage-like structural genes in the bacterial genome, but their link to GTA production is not yet experimentally proven

Arthur Riggs (geneticist) (2,448 words) [view diff] exact match in snippet view article

researchers add short "linkers" to DNA sequences and insert them into the bacterial genome. Riggs and Itakura collaborated with Herbert Boyer at Genentech, and

A for Andromeda (3,782 words) [view diff] exact match in snippet view article find links to article

Pelletier, James F. (25 March 2016). "Design and synthesis of a minimal bacterial genome". Science. 351 (6280): aad6253. Bibcode:2016Sci...351.....H. doi:10

Pan-genome (5,397 words) [view diff] exact match in snippet view article find links to article

Leuze MR, Ahn TH, et al. (March 2015). "Insights from 20 years of bacterial genome sequencing". Functional & Integrative Genomics. 15 (2): 141–61. doi:10

Cas9 (5,614 words) [view diff] exact match in snippet view article find links to article

manipulating hosts' DNA. Since the CRISPR-Cas9 was developed from bacterial genome systems, it can be used to target the genetic material in viruses.

Genome editing (9,361 words) [view diff] exact match in snippet view article find links to article

that originate from viral genomes and have been incorporated into the bacterial genome. Cas (CRISPR associated proteins) process these sequences and cut matching

Harriett Ephrussi-Taylor (588 words) [view diff] exact match in snippet view article find links to article

identified that bacterial phenotypes are due to independent factors in the bacterial genome and factors in transforming DNA. In 1947 Harriett started working with

Cre-Lox recombination (5,058 words) [view diff] exact match in snippet view article find links to article

the lysogenic cycle the phage genome replicates with the rest of the bacterial genome and is transmitted to daughter cells at each subsequent cell division

Native American disease and epidemics (7,598 words) [view diff] exact match in snippet view article find links to article

tuberculosis has also been identified in pre-Columbian populations, by bacterial genome sequences collected from human remains in Peru, and was probably transmitted

Orientia tsutsugamushi (8,076 words) [view diff] exact match in snippet view article find links to article

repetitive sequences, O. tsutsugamushi has the most highly repeated bacterial genome sequenced as of 2013. The repeated DNA sequence includes short repetitive

René Thomas (biologist) (3,271 words) [view diff] exact match in snippet view article

phages). Some bacteriophages can integrate their DNA genome in the bacterial genome, where it remains latent (a state called "prophage") due to the repression

History of genetic engineering (6,419 words) [view diff] exact match in snippet view article find links to article

Venter Institute announced that they had created the first synthetic bacterial genome. The researchers added the new genome to bacterial cells and selected

LSm (5,020 words) [view diff] exact match in snippet view article find links to article

unknown, but amino acid sequence homologs are found in virtually every bacterial genome to date, and it may be an essential protein. The middle domain of the

Genetically modified organism (24,627 words) [view diff] exact match in snippet view article find links to article

Venter Institute announced that they had created the first synthetic bacterial genome. They named it Synthia and it was the world's first synthetic life

Vampirovibrio chlorellavorus (1,798 words) [view diff] exact match in snippet view article find links to article

certain cofactors and vitamins, and 15 different amino acids. Its bacterial genome also includes coding for a complete glycolysis pathway as well as an

Animal testing (21,846 words) [view diff] exact match in snippet view article find links to article

Virulence Annotation (RVA): Identification of virulence factors using a bacterial genome library and multiple invertebrate hosts". Proceedings of the National

Microbiology of Lyme disease (5,580 words) [view diff] exact match in snippet view article find links to article

Dodson RJ, Haft D, Hickey E, Gwinn M, White O, Fraser CM (2000). "A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs

Joseph Vinetz (2,249 words) [view diff] exact match in snippet view article find links to article

responses in terms of complete repertoire of proteins encoded by a bacterial genome and to highlight fundamentally different immunopathogenetic mechanisms

Toxin-antitoxin system (5,970 words) [view diff] exact match in snippet view article find links to article

Toxin-antitoxin systems could prevent harmful large deletions in a bacterial genome, though arguably deletions of large coding regions are fatal to a daughter

Inferring horizontal gene transfer (8,981 words) [view diff] exact match in snippet view article find links to article

PMC 2726834. PMID 19570746. Hao W, Golding GB (September 2010). "Inferring bacterial genome flux while considering truncated genes". Genetics. 186 (1): 411–26

Pathogenomics (5,377 words) [view diff] exact match in snippet view article find links to article

Genome-wide rearrangements do, however, contribute to the plasticity of bacterial genome, which may prime the conditions for other factors to introduce, or

Transcriptomics technologies (12,516 words) [view diff] exact match in snippet view article find links to article

S2CID 3589823. Loman NJ, Quick J, Simpson JT (August 2015). "A complete bacterial genome assembled de novo using only nanopore sequencing data". Nature Methods

Mutation bias (3,377 words) [view diff] exact match in snippet view article find links to article

organisms such as mammals. Similarly, although it may be the case that bacterial genome composition strongly reflects GC and AT biases, the proposed mutational

Transposon sequencing (1,748 words) [view diff] exact match in snippet view article find links to article

enough to determine the location of the transposon insertion in the bacterial genome. The ligation[clarification needed] of the adaptor[clarification needed]

2016 in science (16,748 words) [view diff] exact match in snippet view article find links to article

terms. Craig Venter's team announce they have synthesised a minimal bacterial genome, containing only the genes necessary for life, and consisting of just

CRISPR-associated transposons (1,712 words) [view diff] exact match in snippet view article find links to article

2021). "CRISPR RNA-guided integrases for high-efficiency, multiplexed bacterial genome engineering". Nature Biotechnology. 39 (4): 480–489. doi:10.1038/s41587-020-00745-y

Functional cloning (3,005 words) [view diff] exact match in snippet view article find links to article

combat antibiotic resistance it is important to understand how the bacterial genome is evolving and changing in healthy individuals with no recent usage

Nucleoid (17,185 words) [view diff] exact match in snippet view article find links to article

Pettijohn DE, Hecht R (1974). "RNA molecules bound to the folded bacterial genome stabilize DNA folds and segregate domains of supercoiling". Cold Spring

No-SCAR genome editing (5,650 words) [view diff] exact match in snippet view article find links to article

bacteriophage or plasmid DNA are incorporated as "spacer" sequences into the bacterial genome located between repeating CRISPR loci. Cas endonucleases are able to

Trevor Lawley (2,000 words) [view diff] exact match in snippet view article find links to article

Mitchell, Alex L.; Neville, B. Anne (February 2019). "A human gut bacterial genome and culture collection for improved metagenomic analyses". Nature Biotechnology

Off-target genome editing (6,846 words) [view diff] exact match in snippet view article find links to article

bacteria, this system incorporates segments of the viral DNA into the bacterial genome. Upon a second invasion, transcripts from these sequences direct a

Glossary of cellular and molecular biology (M–Z) (24,936 words) [view diff] exact match in snippet view article

cells divide, the plasmids are replicated along with the rest of the bacterial genome. Any functioning gene of interest within the plasmid will be expressed

Alteromonas macleodii (4,760 words) [view diff] case mismatch in snippet view article find links to article

Sariel; Aharonovich, Dikla; Sher, Daniel (2016-03-08). "Why Close a Bacterial Genome? The Plasmid of Alteromonas Macleodii HOT1A3 is a Vector for Inter-Specific

List of protein subcellular localization prediction tools (5,169 words) [view diff] exact match in snippet view article find links to article

Greiner R, Wishart DS (July 2005). "BASys: a web server for automated bacterial genome annotation". Nucleic Acids Research. 33 (Web Server issue): W455–9

Source attribution (14,501 words) [view diff] exact match in snippet view article find links to article

viruses, so mutations tend to be distributed more sparsely throughout a bacterial genome. For example, WGS data revealed differences between isolates of Burkholderia