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searching for Chromatin immunoprecipitation 85 found (141 total)

alternate case: chromatin immunoprecipitation

MOWChIP-seq (436 words) [view diff] case mismatch in snippet view article find links to article

MOWChIP-seq (Microfluidic Oscillatory Washing–based Chromatin ImmunoPrecipitation followed by sequencing) is a microfluidic technology used in molecular

Multiple displacement amplification (2,116 words) [view diff] case mismatch in snippet view article find links to article

usually require a relatively large amount of amplified DNA. Chromatin Immunoprecipitation results in production of complex mixtures of relatively short

Endogenous retrovirus (8,311 words) [view diff] exact match in snippet view article find links to article

induces the p53 pathway, which results in cell apoptosis. Using chromatin immunoprecipitation with sequencing, thirty-percent of all p53-binding sites were

Chromatin (6,017 words) [view diff] exact match in snippet view article find links to article

close to its pre-damage level after about 20 min. ChIP-seq (Chromatin immunoprecipitation sequencing) is recognized as the vastly utilized chromatin identification

STARR-seq (1,547 words) [view diff] exact match in snippet view article find links to article

formaldehyde-assisted isolation of regulatory elements sequencing (FAIRE-Seq), chromatin immunoprecipitation followed by deep sequencing (ChIP-sequencing), and MNase-defined

H3K9me2 (2,638 words) [view diff] exact match in snippet view article find links to article

looking at the binding location of proteins in the genome. Use of chromatin immunoprecipitation (ChIP)-sequencing revealed regions in the genome characterised

H3K9me3 (1,232 words) [view diff] case mismatch in snippet view article find links to article

The histone mark can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

MFAP1 (409 words) [view diff] exact match in snippet view article find links to article

"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". Genes Dev. 16 (2): 235–44

H3K36me3 (1,523 words) [view diff] case mismatch in snippet view article find links to article

histone mark H3K36me3 can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

H3K4me1 (1,630 words) [view diff] case mismatch in snippet view article find links to article

histone mark H3K4me1 can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

Mammalian promoter database (443 words) [view diff] exact match in snippet view article find links to article

"Isolating human transcription factor targets by coupling chromatin immunoprecipitation". Genes Dev. 16 (2): 235–244. doi:10.1101/gad.943102. PMC 155318

H3R17me2 (1,290 words) [view diff] case mismatch in snippet view article find links to article

histone mark H3K4me1 can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

H3K79me2 (1,230 words) [view diff] case mismatch in snippet view article find links to article

histone mark H3K36me3 can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

H3K27ac (1,713 words) [view diff] case mismatch in snippet view article find links to article

histone mark acetylation can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

GAS2L1 (522 words) [view diff] exact match in snippet view article find links to article

"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". Genes Dev. 16 (2): 235–44

TTK (gene) (835 words) [view diff] exact match in snippet view article

"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". Genes Dev. 16 (2): 235–44

SUZ12 (1,230 words) [view diff] exact match in snippet view article find links to article

Bartley SM, Zhang T, Zhang MQ, Farnham PJ (October 2001). "Use of chromatin immunoprecipitation to clone novel E2F target promoters". Molecular and Cellular

Alexander Varshavsky (2,673 words) [view diff] exact match in snippet view article find links to article

endogenous rules of N-terminal Met removal and retention. (iv) Chromatin immunoprecipitation (ChIP) assay, in 1988. Advanced versions of ChIP are being used

H3R2me2 (1,251 words) [view diff] case mismatch in snippet view article find links to article

histone mark H3K4me1 can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

RECQL (896 words) [view diff] exact match in snippet view article find links to article

"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". Genes Dev. 16 (2): 235–44

UXT (1,406 words) [view diff] exact match in snippet view article find links to article

"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". Genes Dev. 16 (2): 235–44

H4R3me2 (1,241 words) [view diff] case mismatch in snippet view article find links to article

The histone mark can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

RECQL (896 words) [view diff] exact match in snippet view article find links to article

"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". Genes Dev. 16 (2): 235–44

GSTM3 (1,143 words) [view diff] exact match in snippet view article find links to article

functional analysis in a glioma cell line using allele-specific chromatin immunoprecipitation". Cancer Res. 65 (1): 99–104. doi:10.1158/0008-5472.99.65.1

NT5E (2,272 words) [view diff] exact match in snippet view article find links to article

are binding to the NT5E promoter in rats, as was proven in chromatin immunoprecipitation assays. Because human and rat NT5E transcripts are 89% identical

H3R8me2 (1,258 words) [view diff] case mismatch in snippet view article find links to article

histone mark H3K4me1 can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

H3K27me3 (2,633 words) [view diff] case mismatch in snippet view article find links to article

histone mark H3K27me3 can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP sequencing) measures the amount of DNA enrichment

H3R26me2 (1,357 words) [view diff] case mismatch in snippet view article find links to article

histone mark H3K4me1 can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

H3K9ac (1,753 words) [view diff] case mismatch in snippet view article find links to article

histone mark acetylation can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

H4K8ac (1,514 words) [view diff] case mismatch in snippet view article find links to article

histone mark acetylation can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

Michael P. Snyder (1,529 words) [view diff] exact match in snippet view article find links to article

2007). "Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing". Nature Methods. 4 (8): 651–657

H3K14ac (1,751 words) [view diff] case mismatch in snippet view article find links to article

histone mark acetylation can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

Richard M. Myers (1,510 words) [view diff] exact match in snippet view article find links to article

high-throughput genomic methods, including DNA sequencing, genotyping, chromatin immunoprecipitation, mRNA expression profiling, transcriptional promoter and DNA

H4K12ac (1,652 words) [view diff] case mismatch in snippet view article find links to article

histone mark acetylation can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

H3R42me (1,317 words) [view diff] case mismatch in snippet view article find links to article

histone mark H3K4me1 can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

H4K20me (1,696 words) [view diff] case mismatch in snippet view article find links to article

histone mark H4K20me can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

Paired-end tag (1,846 words) [view diff] exact match in snippet view article find links to article

present in the sequenced genome. ChIP-PET: The combined use of chromatin immunoprecipitation (ChIP) and PET is used to detect regions of DNA bound by a protein

HIST1H2AG (599 words) [view diff] exact match in snippet view article find links to article

"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". Genes Dev. 16 (2): 235–44

H2BK5ac (1,583 words) [view diff] case mismatch in snippet view article find links to article

histone mark acetylation can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

H3K23ac (1,511 words) [view diff] case mismatch in snippet view article find links to article

histone mark acetylation can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

ATAC-seq (3,209 words) [view diff] case mismatch in snippet view article find links to article

Landscape by Micrococcal Nuclease-Sequencing (MNase-seq)". Chromatin Immunoprecipitation. Methods in Molecular Biology. Vol. 1689. pp. 83–101. doi:10

DLX1 (544 words) [view diff] exact match in snippet view article find links to article

the developing mouse forebrain and retina by optimization of chromatin immunoprecipitation". Nucleic Acids Res. 32 (3): 884–92. doi:10.1093/nar/gkh233

H4K5ac (1,627 words) [view diff] case mismatch in snippet view article find links to article

histone mark acetylation can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

BECN1 (1,482 words) [view diff] exact match in snippet view article find links to article

Bartley SM, Zhang T, Zhang MQ, Farnham PJ (October 2001). "Use of chromatin immunoprecipitation to clone novel E2F target promoters". Molecular and Cellular

H3S28P (2,051 words) [view diff] case mismatch in snippet view article find links to article

The histone mark can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

HIST1H2BJ (911 words) [view diff] exact match in snippet view article find links to article

"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". Genes Dev. 16 (2): 235–244

Pseudo-response regulator (1,801 words) [view diff] exact match in snippet view article find links to article

of the repressilator of the biological clock in A. thaliana. Chromatin immunoprecipitation demonstrates that LUX binds to the PRR9 promoter to repress

CSDA (gene) (825 words) [view diff] exact match in snippet view article

"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". Genes Dev. 16 (2): 235–44

Bacterial one-hybrid system (1,925 words) [view diff] exact match in snippet view article find links to article

investigate protein–DNA interactions. Microarray-based readout of chromatin immunoprecipitation (ChIP-chip) for high-throughput binding-site determination relies

Dishevelled binding antagonist of beta catenin 1 (917 words) [view diff] exact match in snippet view article find links to article

Taniguchi H, Miyazawa K, Sunamura M, et al. (January 2009). "Chromatin immunoprecipitation on microarray analysis of Smad2/3 binding sites reveals roles

Biotinylation (2,941 words) [view diff] exact match in snippet view article find links to article

Ogryzko, Vasily (2004). "Use of protein biotinylation in vivo for chromatin immunoprecipitation". Analytical Biochemistry. 325 (1): 68–76. doi:10.1016/j.ab

IRF6 (1,547 words) [view diff] exact match in snippet view article find links to article

through utilization of mouse genetics, gene expression analyses, chromatin immunoprecipitation studies and luciferase reporter assays, it has been shown that

SMiLE-Seq (1,198 words) [view diff] exact match in snippet view article find links to article

Before the introduction of SMiLE-seq technology, ChIP-seq (chromatin immunoprecipitation sequencing) and HT-SELEX (high throughput systematic evolution

E2F2 (1,241 words) [view diff] exact match in snippet view article find links to article

"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". Genes Dev. 16 (2): 235–44

Enhancer RNA (3,549 words) [view diff] exact match in snippet view article find links to article

investigation techniques such as RNA sequencing (RNA-seq) and chromatin immunoprecipitation-sequencing (ChIP-seq). RNA-seq permits the direct identification

HIST2H4A (1,010 words) [view diff] exact match in snippet view article find links to article

"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". Genes Dev. 16 (2): 235–44

E2F3 (1,279 words) [view diff] exact match in snippet view article find links to article

"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". Genes & Development. 16

Epigenome (3,801 words) [view diff] case mismatch in snippet view article find links to article

epigenomic states (such as gene expression): Histone Modifications – Chromatin Immunoprecipitation Sequencing (ChIP-Seq) identifies genome wide patterns of histone

CEBPE (1,130 words) [view diff] exact match in snippet view article find links to article

Khanna-Gupta A, Zibello T, Sun H, Gaines P, Berliner N (May 2003). "Chromatin immunoprecipitation (ChIP) studies indicate a role for CCAAT enhancer binding proteins

H3T3P (1,857 words) [view diff] case mismatch in snippet view article find links to article

The histone mark can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

CBX5 (gene) (2,431 words) [view diff] exact match in snippet view article

"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". Genes & Development. 16

KDM5A (1,598 words) [view diff] exact match in snippet view article find links to article

of OSX and OC to maintain the level of the H3K4me3 mark by chromatin immunoprecipitation assays. RBP2 was also physically and functionally associated

FAM227B (1,705 words) [view diff] exact match in snippet view article find links to article

Schavolt KL, Tang L, Jiang X, Pietenpol JA (November 2005). "Chromatin immunoprecipitation-based screen to identify functional genomic binding sites for

H3T6P (1,884 words) [view diff] case mismatch in snippet view article find links to article

The histone mark can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

FAM227B (1,705 words) [view diff] exact match in snippet view article find links to article

Schavolt KL, Tang L, Jiang X, Pietenpol JA (November 2005). "Chromatin immunoprecipitation-based screen to identify functional genomic binding sites for

Spike-in controls (1,471 words) [view diff] case mismatch in snippet view article find links to article

spike-ins: Used in genomics applications such as ChIP-Seq (Chromatin Immunoprecipitation Sequencing), DNA methylation analysis (e.g., bisulfite sequencing)

H3Y41P (2,138 words) [view diff] case mismatch in snippet view article find links to article

The histone mark can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

CCDC188 (1,184 words) [view diff] no match in snippet view article find links to article

contains highly conserved p53 and CREB-ATF4 binding sites. Chromatin-immunoprecipitation analysis confirms p53 binding to the promoter region of CCDC188

Transcription factor Sp1 (3,441 words) [view diff] exact match in snippet view article find links to article

of these regulators to the FTMT promoter was examined using chromatin immunoprecipitation (ChIP) assay. Among the regulators, only SP1 displayed significantly

Aspergillus fumigatus (4,601 words) [view diff] exact match in snippet view article find links to article

in vitro growth in hypoxia as well as attenuated virulence. Chromatin immunoprecipitation studies with the SrbA protein led to the identification of a

Nucleoid (17,320 words) [view diff] no match in snippet view article find links to article

low-affinity general binding is involved in DNA condensation. In chromatin-immunoprecipitation coupled with DNA sequencing (ChIP-Seq), HU does not reveal any

Forkhead box protein O1 (3,562 words) [view diff] exact match in snippet view article find links to article

that human FOXO1 is linked with the cyclin D1 promoter using chromatin immunoprecipitation assays (ChIP assays). H215R is a human FOXO1 mutant, which cannot

H3T11P (2,020 words) [view diff] case mismatch in snippet view article find links to article

The histone mark can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

AI-10-49 (2,849 words) [view diff] exact match in snippet view article find links to article

connected with each other and to the MYC promoter. Analysis of chromatin immunoprecipitation revealed that AI-10-49 treatment results in the displacement

H3T45P (2,046 words) [view diff] case mismatch in snippet view article find links to article

The histone mark can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

Epigenetics of chronic pain (2,226 words) [view diff] no match in snippet view article find links to article

expression and its product H3K9me2 when a nerve injury occurred. A chromatin-immunoprecipitation assay showed that there was a rise in protein enrichment of

H3S10P (2,401 words) [view diff] case mismatch in snippet view article find links to article

The histone mark can be detected in a variety of ways: 1. Chromatin Immunoprecipitation Sequencing (ChIP-sequencing) measures the amount of DNA enrichment

Adipose tissue (8,854 words) [view diff] exact match in snippet view article find links to article

identified as a potential therapeutic molecule to induce beiging. Chromatin immunoprecipitation with sequencing (ChIP-seq) is a method used to identify protein

Hsp70 (5,841 words) [view diff] exact match in snippet view article find links to article

of Hsp70 and acts as a ubiquitin ligase for clients. CHIP, chromatin immunoprecipitation; Hsp70, heat shock protein 70 kDa; TPR, tetratricopeptide repeat

Cohesin (6,849 words) [view diff] case mismatch in snippet view article find links to article

subunits in different eukaryotes may have different names: Chromatin Immunoprecipitation (ChIP): Used to study cohesin-DNA interactions. Includes variations

Candida albicans (10,025 words) [view diff] exact match in snippet view article find links to article

represent Wor1 control of each gene, based on Wor1 enrichment in chromatin immunoprecipitation experiments. Activation (arrowhead) and repression (bar) are

Staphylococcus aureus (13,968 words) [view diff] exact match in snippet view article find links to article

Sengupta M, Jain V, Wilkinson BJ, Jayaswal RK (June 2012). "Chromatin immunoprecipitation identifies genes under direct VraSR regulation in Staphylococcus

Microfluidics (11,539 words) [view diff] exact match in snippet view article find links to article

human organ surroundings. One strategy relevant to single-cell chromatin immunoprecipitation (ChiP)‐Sequencing is droplets, which operates by combining droplet‐based

Spindle checkpoint (9,173 words) [view diff] exact match in snippet view article find links to article

close to the centromeres, as it was shown in a study using chromatin immunoprecipitation. Classical cytologic observations suggested that sister chromatids

Kevin Struhl (5,082 words) [view diff] exact match in snippet view article find links to article

mutants, protein fusions for artificial recruitment - along with chromatin immunoprecipitation (ChIP), demonstrated that transcriptional regulation in yeast