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searching for Briefings in Bioinformatics 131 found (139 total)

alternate case: briefings in Bioinformatics

Vector NTI (390 words) [view diff] exact match in snippet view article find links to article

"Analysis for free: Comparing programs for sequence analysis". Briefings in Bioinformatics. 5 (1): 82–87. doi:10.1093/bib/5.1.82. ISSN 1467-5463. PMID 15153308

Alignment-free sequence analysis (6,323 words) [view diff] exact match in snippet view article find links to article

Batzoglou S (March 2005). "The many faces of sequence alignment". Briefings in Bioinformatics. 6 (1): 6–22. doi:10.1093/bib/6.1.6. PMID 15826353. Mullan L

GPR160 (228 words) [view diff] exact match in snippet view article find links to article

families: application to the G protein-coupled receptor superfamily". Briefings in Bioinformatics. 1 (1): 93–99. doi:10.1093/bib/1.1.93. PMID 11466977. v t e

Ujjwal Maulik (1,999 words) [view diff] exact match in snippet view article find links to article

Information Gene Regulatory Networks, and Protein Moonlighting". Briefings in Bioinformatics. 23 (1). doi:10.1093/bib/bbab465. PMID 34849560. Dey, A.; Sen

HUGO Gene Nomenclature Committee (906 words) [view diff] exact match in snippet view article find links to article

"HCOP: a searchable database of human orthology predictions". Briefings in Bioinformatics. 8 (1): 2–5. doi:10.1093/bib/bbl030. PMID 16951416. "About the

RNA-Seq (11,098 words) [view diff] exact match in snippet view article find links to article

applications: the application and utility of bioinformatic methodology". Briefings in Bioinformatics. 22 (6). doi:10.1093/bib/bbab259. PMID 34329375. Kukurba KR,

Simple Sloppy Semantic Database (575 words) [view diff] exact match in snippet view article find links to article

Chen JY (2012). "Semantic Web meets Integrative Biology: a survey". Briefings in Bioinformatics. 14 (1): 109–25. doi:10.1093/bib/bbs014. PMID 22492191.

Binning (metagenomics) (2,018 words) [view diff] exact match in snippet view article

recover high-quality genomes from complex metagenomic datasets". Briefings in Bioinformatics. 23 (6). doi:10.1093/bib/bbac431. IMG/M Data Consortium; Nayfach

Netherlands Bioinformatics Centre (665 words) [view diff] exact match in snippet view article find links to article

"Bioinformatics in the Netherlands: the value of a nationwide community". Briefings in Bioinformatics. 20 (2): 375–383. doi:10.1093/bib/bbx087. PMC 6433734. PMID 28968694

SNP annotation (4,230 words) [view diff] exact match in snippet view article find links to article

2009). "Next generation tools for the annotation of human SNPs". Briefings in Bioinformatics. 10 (1): 35–52. doi:10.1093/bib/bbn047. PMC 2638621. PMID 19181721

Sequence assembly (2,864 words) [view diff] exact match in snippet view article find links to article

"The present and future of de novo whole-genome assembly". Briefings in Bioinformatics. 19 (1): 23–40. doi:10.1093/bib/bbw096. PMID 27742661. Baker

LSID (707 words) [view diff] exact match in snippet view article find links to article

Geo Sample Number SciCrunch Clark T., Martin S., Liefeld T. Briefings in Bioinformatics 5.1:59-70, March 1, 2004. Cover, Robin. "OMG Life Sciences Identifiers

Protein family (1,571 words) [view diff] exact match in snippet view article find links to article

computational methods for protein remote homology detection". Briefings in Bioinformatics. 19 (2): 231–244. doi:10.1093/bib/bbw108. ISSN 1477-4054. PMID 27881430

UniProt (1,849 words) [view diff] exact match in snippet view article find links to article

"High-quality protein knowledge resource: SWISS-PROT and TrEMBL". Briefings in Bioinformatics. 3 (3): 275–284. doi:10.1093/bib/3.3.275. PMID 12230036. Wu,

Biocuration (5,813 words) [view diff] exact match in snippet view article find links to article

"Crowdsourcing in biomedicine: challenges and opportunities". Briefings in Bioinformatics. 17 (1): 23–32. doi:10.1093/BIB/BBV021. PMC 4719068. PMID 25888696

Gene Ontology (2,282 words) [view diff] exact match in snippet view article find links to article

how and why of gene ontology--a primer for bioinformaticians". Briefings in Bioinformatics. 12 (6): 723–35. doi:10.1093/bib/bbr002. PMC 3220872. PMID 21330331

Restriction fragment length polymorphism (1,159 words) [view diff] exact match in snippet view article find links to article

(2015-03-29). "A survey of tools for analysing DNA fingerprints". Briefings in Bioinformatics: bbv016. doi:10.1093/bib/bbv016. ISSN 1467-5463. https://www

Alex Bateman (1,139 words) [view diff] exact match in snippet view article find links to article

(2008). "Pfam 10 years on: 10,000 families and still growing". Briefings in Bioinformatics. 9 (3): 210–9. doi:10.1093/bib/bbn010. PMID 18344544. Griffiths-Jones

Data scraping (1,772 words) [view diff] exact match in snippet view article find links to article

(April 30, 2013). "Web scraping technologies in an API world". Briefings in Bioinformatics. 15 (5): 788–797. doi:10.1093/bib/bbt026. hdl:1822/32460. PMID 23632294

BioModels (646 words) [view diff] exact match in snippet view article find links to article

and integrated toolkit for computational modelling software, Briefings in Bioinformatics, doi:10.1093/bib/bbp056 BioModels Database: Hinxton, 26 June

BioCatalogue (377 words) [view diff] exact match in snippet view article find links to article

"Data curation + process curation=data integration + science". Briefings in Bioinformatics. 9 (6): 506–517. doi:10.1093/bib/bbn034. PMID 19060304. Belhajjame

Unstructured data (1,863 words) [view diff] exact match in snippet view article find links to article

Applications in Text and Data Mining for Biomedical Discovery". Briefings in Bioinformatics. 17 (1): 33–42. doi:10.1093/bib/bbv087. ISSN 1477-4054. PMC 4719073

Common Lisp Interface Manager (990 words) [view diff] exact match in snippet view article find links to article

software for pathway/genome informatics and systems biology". Briefings in Bioinformatics. 22 (1): 109–126. doi:10.1093/bib/bbz104. ISSN 1467-5463. PMC 8453236

Pfam (2,732 words) [view diff] exact match in snippet view article find links to article

(2008). "Pfam 10 years on: 10 000 families and still growing". Briefings in Bioinformatics. 9 (3): 210–219. doi:10.1093/bib/bbn010. PMID 18344544. Sonnhammer

Functional divergence (614 words) [view diff] exact match in snippet view article find links to article

M (2011). "When orthologs diverge between human and mouse". Briefings in Bioinformatics. 12 (5): 436–441. doi:10.1093/bib/bbr031. PMC 3178054. PMID 21677033

NTN5 (433 words) [view diff] exact match in snippet view article find links to article

functional annotations within the Gene Ontology consortium". Briefings in Bioinformatics. 12 (5): 449–462. doi:10.1093/bib/bbr042. PMC 3178059. PMID 21873635

ANGIS (500 words) [view diff] exact match in snippet view article find links to article

as a teaching tool in undergraduate bioinformatics training". Briefings in Bioinformatics. 8 (7): 457–465. doi:10.1093/bib/bbm039. (1) eBioinformatics/Encompass/Entigen

Small protein (707 words) [view diff] exact match in snippet view article find links to article

(2012-03-09). "The automatic annotation of bacterial genomes". Briefings in Bioinformatics. 14 (1): 1–12. doi:10.1093/bib/bbs007. ISSN 1467-5463. PMC 3548604

GeneCards (2,450 words) [view diff] exact match in snippet view article find links to article

interfacing GeneCards with high-throughput gene expression compendia". Briefings in Bioinformatics. 4 (4): 349–60. doi:10.1093/bib/4.4.349. PMID 14725348. Chang

Common Workflow Language (529 words) [view diff] exact match in snippet view article find links to article

(2017-05-01). "A review of bioinformatic pipeline frameworks". Briefings in Bioinformatics. 18 (3): 530–536. doi:10.1093/bib/bbw020. ISSN 1467-5463. PMC 5429012

Knowledge graph (2,208 words) [view diff] exact match in snippet view article find links to article

"Biological applications of knowledge graph embedding models". Briefings in Bioinformatics. 22 (2): 1679–1693. doi:10.1093/bib/bbaa012.

Bioinformatics workflow management system (1,097 words) [view diff] exact match in snippet view article find links to article

Leipzig J (2016). "A review of bioinformatic pipeline frameworks". Briefings in Bioinformatics. 18 (3): 530–536. doi:10.1093/bib/bbw020. PMC 5429012. PMID 27013646

Protein subcellular localization prediction (1,359 words) [view diff] exact match in snippet view article find links to article

subcellular localisation from amino acid sequence information". Briefings in Bioinformatics. 3 (4): 361–76. doi:10.1093/bib/3.4.361. PMID 12511065. Schneider

Flux balance analysis (5,868 words) [view diff] exact match in snippet view article find links to article

(2006). "Flux balance analysis in the era of metabolomics". Briefings in Bioinformatics. 7 (2): 140–50. doi:10.1093/bib/bbl007. PMID 16772264. Feist

Security visualisation (511 words) [view diff] exact match in snippet view article find links to article

(2011). "Hive Plots — Rational Approach to Visualizing Networks". Briefings in Bioinformatics. 13 (5): 627–644. doi:10.1093/bib/BBR069. PMID 22155641. S.T

List of liquid–liquid phase separation databases (338 words) [view diff] exact match in snippet view article find links to article

the relations between membraneless organelles and diseases". Briefings in Bioinformatics. 22 (4). doi:10.1093/bib/bbaa271. ISSN 1467-5463. PMID 33126250

Machine learning in bioinformatics (8,082 words) [view diff] exact match in snippet view article find links to article

et al. (March 2006). "Machine learning in bioinformatics". Briefings in Bioinformatics. 7 (1): 86–112. doi:10.1093/bib/bbk007. PMID 16761367. Pérez-Wohlfeil

BIOSCI (442 words) [view diff] exact match in snippet view article find links to article

(2004). "Software Review: Bioinformatics software resources". Briefings in Bioinformatics. 5 (3): 300–304. doi:10.1093/bib/5.3.300. PMID 15383216. Benton

Biomedical data science (1,025 words) [view diff] exact match in snippet view article find links to article

Fei (2020). "Network embedding in biomedical data science". Briefings in Bioinformatics. 21 (1): 182–197. doi:10.1093/bib/bby117. PMID 30535359. Zaringhalam

Anatomography (1,145 words) [view diff] exact match in snippet view article find links to article

resources: Online distribution trial in Japan named TogoTV". Briefings in Bioinformatics. 13 (2): 258–68. doi:10.1093/bib/bbr039. PMC 3294242. PMID 21803786

Pan-genome (5,396 words) [view diff] exact match in snippet view article find links to article

"Computational pan-genomics: status, promises and challenges". Briefings in Bioinformatics. 19 (1): 118–135. doi:10.1093/bib/bbw089. PMC 5862344. PMID 27769991

QFAB Bioinformatics (483 words) [view diff] exact match in snippet view article find links to article

bioinformatics support to life science researchers in Australia". Briefings in Bioinformatics. 20 (2): 384–389. doi:10.1093/bib/bbx071. PMC 6433737. PMID 29106479

Entropy network (605 words) [view diff] exact match in snippet view article find links to article

"VisANT: an integrative framework for networks in systems biology". Briefings in Bioinformatics. 9 (4): 317–325. doi:10.1093/bib/bbn020. PMC 2743399. PMID 18463131

Ümit Çatalyürek (867 words) [view diff] exact match in snippet view article find links to article

analysis of biclustering algorithms for gene expression data". Briefings in Bioinformatics. 14 (3): 279–292. doi:10.1093/bib/bbs032. ISSN 1467-5463. PMC 3659300

Applied ontology (1,246 words) [view diff] exact match in snippet view article find links to article

biological and biomedical research: a functional perspective". Briefings in Bioinformatics. 16 (6): 1069–1080. doi:10.1093/bib/bbv011. hdl:10754/543733

Eduardo Abeliuk (554 words) [view diff] exact match in snippet view article find links to article

research: toward reference networks for key model organisms. Briefings in Bioinformatics. *"Latest JBEI Startup to Speed Up Biotech Industry'" "These

Genome browser (1,633 words) [view diff] exact match in snippet view article find links to article

2013). "A brief introduction to web-based genome browsers". Briefings in Bioinformatics. 14 (2): 131–143. doi:10.1093/bib/bbs029. PMID 22764121. Michael

Biopython (1,816 words) [view diff] exact match in snippet view article find links to article

Harry (September 2002). "The Bio* toolkits—a brief overview". Briefings in Bioinformatics. 3 (3): 296–302. doi:10.1093/bib/3.3.296. PMID 12230038. Chapman

Chargaff's rules (2,014 words) [view diff] exact match in snippet view article find links to article

randomness: the origin of the Chargaff's second parity rule". Briefings in Bioinformatics. 22 (bbaa04): 2172–2181. doi:10.1093/bib/bbaa041. PMC 7986665

Srinivas Aluru (1,151 words) [view diff] exact match in snippet view article find links to article

of error-correction methods for next-generation sequencing". Briefings in Bioinformatics. 14 (1): 56–66. doi:10.1093/bib/bbs015. ISSN 1467-5463. PMID 22492192

MetaNetX (331 words) [view diff] exact match in snippet view article find links to article

metabolites and biochemical reactions for metabolic networks". Briefings in Bioinformatics. 15 (1): 123–135. doi:10.1093/bib/bbs058. PMC 3896926. PMID 23172809

MIRIAM Registry (806 words) [view diff] exact match in snippet view article find links to article

and integrated toolkit for computational modelling software". Briefings in Bioinformatics. 11 (3): 270–7. doi:10.1093/bib/bbp056. PMC 2913671. PMID 19939940

Sophia Ananiadou (1,039 words) [view diff] exact match in snippet view article find links to article

mining and ontologies in biomedicine: Making sense of raw text". Briefings in Bioinformatics. 6 (3): 239–251. doi:10.1093/bib/6.3.239. ISSN 1467-5463. PMID 16212772

Sanger sequencing (3,344 words) [view diff] exact match in snippet view article find links to article

2011). "Base-calling for next-generation sequencing platforms". Briefings in Bioinformatics. 12 (5): 489–497. doi:10.1093/bib/bbq077. PMC 3178052. PMID 21245079

Translational bioinformatics (2,818 words) [view diff] exact match in snippet view article find links to article

Computational approaches for the hunting of disease genes". Briefings in Bioinformatics. 11 (1): 96–110. doi:10.1093/bib/bbp048. PMC 2810112. PMID 20007728

BLAT (bioinformatics) (2,168 words) [view diff] exact match in snippet view article

WJ (2013). "The UCSC genome browser and associated tools". Briefings in Bioinformatics. 14 (2): 144–61. doi:10.1093/bib/bbs038. PMC 3603215. PMID 22908213

Intelligent Systems for Molecular Biology (2,787 words) [view diff] exact match in snippet view article find links to article

(2006). "Bio-ontologies: current trends and future directions". Briefings in Bioinformatics. 7 (3): 256–274. doi:10.1093/bib/bbl027. PMC 1847325. PMID 16899495

DNA annotation (7,339 words) [view diff] exact match in snippet view article find links to article

"Discovering and detecting transposable elements in genome sequences". Briefings in Bioinformatics. 8 (6): 382–392. doi:10.1093/bib/bbm048. PMID 17932080. Alexander

BioFabric (709 words) [view diff] exact match in snippet view article find links to article

(2011). "Hive plots--rational approach to visualizing networks". Briefings in Bioinformatics. 13 (5): 627–644. doi:10.1093/bib/bbr069. ISSN 1467-5463. PMID 22155641

Metabolome (3,171 words) [view diff] exact match in snippet view article find links to article

(September 2007). "Current progress in computational metabolomics". Briefings in Bioinformatics. 8 (5): 279–93. doi:10.1093/bib/bbm030. PMID 17626065. Nordström

MAFFT (2,079 words) [view diff] exact match in snippet view article find links to article

developments in the MAFFT multiple sequence alignment program". Briefings in Bioinformatics. 9 (4): 286–298. doi:10.1093/bib/bbn013. PMID 18372315. "MAFFT

List of RNA-Seq bioinformatics tools (20,376 words) [view diff] exact match in snippet view article find links to article

"Feasibility of sample size calculation for RNA-seq studies". Briefings in Bioinformatics. 19 (4): 713–720. doi:10.1093/bib/bbw144. PMID 28100468. S2CID 28848959

Vertebrate Genome Annotation Project (1,799 words) [view diff] exact match in snippet view article find links to article

January 2005). "VEGA, the genome browser with a difference". Briefings in Bioinformatics. 6 (2): 189–193. doi:10.1093/bib/6.2.189. PMID 15975227. Ashurst

DeMix (1,089 words) [view diff] exact match in snippet view article find links to article

Genomic Data Derived from Heterogeneous Tumor Tissue Samples.” Briefings in Bioinformatics, vol. 16, no. 2, 2014, pp. 232–241., doi:10.1093/bib/bbu002.

TranSMART (1,021 words) [view diff] exact match in snippet view article find links to article

clinical and omics data: a review of publicly available solutions". Briefings in Bioinformatics. 16 (2): 280–90. doi:10.1093/bib/bbu006. PMC 4364065. PMID 24608524

Biodiversity informatics (2,677 words) [view diff] exact match in snippet view article find links to article

organizing and linking information across the spectrum of life". Briefings in Bioinformatics. 8 (5): 347–357. doi:10.1093/bib/bbm037. hdl:1912/1781. PMID 17704120

High-throughput screening (4,120 words) [view diff] exact match in snippet view article find links to article

comprehensive review of practical issues and methodological solutions". Briefings in Bioinformatics. 16 (6): 974–986. doi:10.1093/bib/bbv004. ISSN 1467-5463. PMID 25750417

List of software to detect low complexity regions in proteins (930 words) [view diff] exact match in snippet view article find links to article

"Disentangling the complexity of low complexity proteins". Briefings in Bioinformatics. 21 (2): 458–472. doi:10.1093/bib/bbz007. ISSN 1467-5463. PMC 7299295

DESeq2 (605 words) [view diff] exact match in snippet view article find links to article

normalization methods from the perspective of their assumptions". Briefings in Bioinformatics. 19 (5): 776–792. doi:10.1093/bib/bbx008. PMC 6171491. PMID 28334202

Scoring functions for docking (2,547 words) [view diff] exact match in snippet view article find links to article

performance via learning from scoring function components". Briefings in Bioinformatics. 22 (bbaa094). doi:10.1093/bib/bbaa094. PMID 32496540. Shen C

BLAST (biotechnology) (4,922 words) [view diff] exact match in snippet view article

(2014). "BLAST output visualization in the new sequencing era". Briefings in Bioinformatics. 15 (4): 484–503. doi:10.1093/bib/bbt009. PMID 23603091. "NCBI

Graph neural network (3,984 words) [view diff] exact match in snippet view article find links to article

cell type annotation for single-cell ATAC sequencing data". Briefings in Bioinformatics. 25 (3). doi:10.1093/bib/bbae152. PMC 10998639. Gilmer, Justin;

Reference genome (3,493 words) [view diff] exact match in snippet view article find links to article

comprehensive review of scaffolding methods in genome assembly". Briefings in Bioinformatics. 22 (5): bbab033. doi:10.1093/bib/bbab033. ISSN 1477-4054. PMID 33634311

Semantic similarity (4,216 words) [view diff] exact match in snippet view article find links to article

protein data: assessment with biological features and issues". Briefings in Bioinformatics. 13 (5): 569–585. doi:10.1093/bib/bbr066. PMID 22138322. Benabderrahmane

Biochemistry (6,458 words) [view diff] exact match in snippet view article find links to article

"The WWWH of remote homolog detection: The state of the art". Briefings in Bioinformatics. 8 (2): 78–87. doi:10.1093/bib/bbl032. PMID 17003074. Fiske,

Sequence analysis (3,894 words) [view diff] exact match in snippet view article find links to article

2012). "A brief introduction to web-based genome browsers". Briefings in Bioinformatics. 14 (2): 131–143. doi:10.1093/bib/bbs029. PMID 22764121. Pevsner

Gene structure (2,320 words) [view diff] exact match in snippet view article find links to article

"Vector NTI, a balanced all-in-one sequence analysis suite". Briefings in Bioinformatics. 5 (4): 378–88. doi:10.1093/bib/5.4.378. ISSN 1467-5463. PMID 15606974

Non-coding RNA (7,253 words) [view diff] exact match in snippet view article find links to article

applications: the application and utility of bioinformatic methodology". Briefings in Bioinformatics. 22 (6). doi:10.1093/bib/bbab259. PMID 34329375. Washietl S,

SwellRT (2,008 words) [view diff] exact match in snippet view article find links to article

platforms in personal genomics and bioinformatics education". Briefings in Bioinformatics. 18 (6): 1082–1090. doi:10.1093/bib/bbw078. PMID 27580620. S2CID 23805520

ZNF548 (1,226 words) [view diff] exact match in snippet view article find links to article

functional annotations within the Gene Ontology consortium. Briefings in Bioinformatics, 12(5), 449–462. doi:10.1093/bib/bbr042 Reactome entry on Transcription

Metabolic flux analysis (2,176 words) [view diff] exact match in snippet view article find links to article

applications toward quantitative metabolic flux analysis and modeling". Briefings in Bioinformatics. 15 (1): 91–107. doi:10.1093/bib/bbs065. PMID 23142828. Weitzel

Genomics (7,553 words) [view diff] exact match in snippet view article find links to article

"Genome assembly reborn: recent computational challenges". Briefings in Bioinformatics. 10 (4): 354–366. doi:10.1093/bib/bbp026. PMC 2691937. PMID 19482960

S. Joshua Swamidass (1,329 words) [view diff] case mismatch in snippet view article find links to article

survey of current trends in computational drug repositioning. Briefings in bioinformatics, 17(1), 2–12. Ching, T., Himmelstein, D. S., Beaulieu-Jones,

Metatranscriptomics (4,188 words) [view diff] exact match in snippet view article find links to article

metagenome and metatranscriptome data analysis in microbes". Briefings in Bioinformatics. 19 (6): 1415–1429. doi:10.1093/bib/bbx051. PMID 28481971. Franzosa

Bioinformatics (8,425 words) [view diff] exact match in snippet view article find links to article

Gilbert D (September 2004). "Bioinformatics software resources". Briefings in Bioinformatics. 5 (3): 300–4. doi:10.1093/bib/5.3.300. PMID 15383216. Keedwell

Protein (11,386 words) [view diff] exact match in snippet view article find links to article

web services for structural biology and biomedical research". Briefings in Bioinformatics. 9 (4): 276–285. doi:10.1093/bib/bbn015. PMID 18430752. Walian

Multiomics (4,093 words) [view diff] exact match in snippet view article find links to article

complex disease: integrative methods for multi-omics data". Briefings in Bioinformatics. 19 (6): 1370–1381. doi:10.1093/bib/bbx066. ISSN 1467-5463. PMC 6454489

Protein–protein interaction (8,396 words) [view diff] exact match in snippet view article find links to article

"NGPINT: a next-generation protein-protein interaction software". Briefings in Bioinformatics. 22 (4). doi:10.1093/bib/bbaa351. PMID 33367498. Velásquez-Zapata

Histone deacetylase 2 (4,587 words) [view diff] exact match in snippet view article find links to article

"Genome-wide characterization of lncRNAs in acute myeloid leukemia". Briefings in Bioinformatics. 19 (4): 627–635. doi:10.1093/bib/bbx007. PMC 6355113. PMID 28203711

Extracellular RNA (2,898 words) [view diff] exact match in snippet view article find links to article

for Illumina high-throughput RNA sequencing data analysis". Briefings in Bioinformatics. 14 (6): 671–683. doi:10.1093/bib/bbs046. PMID 22988256. Wang

Chromosome conformation capture (5,404 words) [view diff] exact match in snippet view article find links to article

sites before and after the next-generation sequencing era". Briefings in Bioinformatics. 14 (2): 225–37. doi:10.1093/bib/bbs016. PMC 3603212. PMID 22517426

Transcriptomics technologies (12,516 words) [view diff] exact match in snippet view article find links to article

applications: the application and utility of bioinformatic methodology". Briefings in Bioinformatics. 22 (6). doi:10.1093/bib/bbab259. PMID 34329375. Ritchie ME,

Multifactor dimensionality reduction (4,518 words) [view diff] exact match in snippet view article find links to article

"A roadmap to multifactor dimensionality reduction methods". Briefings in Bioinformatics. 17 (2): 293–308. doi:10.1093/bib/bbv038. ISSN 1477-4054. PMC 4793893

Protein function prediction (4,123 words) [view diff] exact match in snippet view article find links to article

how and why of gene ontology--a primer for bioinformaticians". Briefings in Bioinformatics. 12 (6): 723–35. doi:10.1093/bib/bbr002. PMC 3220872. PMID 21330331

Receiver operating characteristic (7,838 words) [view diff] exact match in snippet view article find links to article

analysis in clinical microarray research (and how to avoid them)". Briefings in Bioinformatics. 13 (1). Oxford University Press (OUP): 83–97. doi:10.1093/bib/bbr008

Tree alignment (2,313 words) [view diff] exact match in snippet view article find links to article

Serafim Batzoglou. The many faces of sequence alignment[J]. Briefings in Bioinformatics. 2005,6(1):6—22 Aho A V, Corasick M J. Efficient string matching:

Small integral membrane protein 14 (1,837 words) [view diff] exact match in snippet view article find links to article

Interfacing GeneCards with high-throughput gene expression compendia". Briefings in Bioinformatics. 4 (4): 349–360. doi:10.1093/bib/4.4.349. PMID 14725348. "SMIM14

BioJava (4,098 words) [view diff] exact match in snippet view article find links to article

visualization. Mangalam H (2002). "The Bio* toolkits--a brief overview". Briefings in Bioinformatics. 3 (3): 296–302. doi:10.1093/bib/3.3.296. PMID 12230038. Cock

Yashpal Singh Malik (822 words) [view diff] exact match in snippet view article find links to article

preference insights into spike glycoprotein of SARS-CoV-2". Briefings in Bioinformatics. 22 (2:1006–1022): 1006–1022. doi:10.1093/bib/bbaa383. ISSN 1477-4054

Docking theory of olfaction (2,644 words) [view diff] exact match in snippet view article find links to article

protein secondary structure prediction: the final stretch?". Briefings in Bioinformatics. 19 (3): 482–494. doi:10.1093/bib/bbw129. PMC 5952956. PMID 28040746

GISAID (4,740 words) [view diff] exact match in snippet view article find links to article

and search systems for perspective mitigation of COVID-19". Briefings in Bioinformatics. 22 (2): 664–675. doi:10.1093/bib/bbaa359. PMC 7799334. PMID 33348368

Low complexity regions in proteins (3,569 words) [view diff] exact match in snippet view article find links to article

(2014-07-01). "Understanding and identifying amino acid repeats". Briefings in Bioinformatics. 15 (4): 582–591. doi:10.1093/bib/bbt003. ISSN 1467-5463. PMC 4103538

Botany (14,771 words) [view diff] exact match in snippet view article find links to article

George M. (2006). "Computational aspects of systematic biology". Briefings in Bioinformatics. 7 (2): 186–195. doi:10.1093/bib/bbl005. PMID 16772262. Lin,

Metabolic network modelling (5,355 words) [view diff] exact match in snippet view article find links to article

software for pathway/genome informatics and systems biology". Briefings in Bioinformatics. 11 (1): 40–79. arXiv:1510.03964. doi:10.1093/bib/bbp043. PMC 2810111

De novo peptide sequencing (4,013 words) [view diff] exact match in snippet view article find links to article

computational inference from mass spectrometry-based proteomics". Briefings in Bioinformatics. 8 (5): 304–317. doi:10.1093/bib/bbm023. PMID 17584764. Lu, Bingwen;

Comparative genomics (8,127 words) [view diff] exact match in snippet view article find links to article

high-performance genomics data visualization and exploration". Briefings in Bioinformatics. 14 (2): 178–192. doi:10.1093/bib/bbs017. PMC 3603213. PMID 22517427

Single-cell sequencing (8,560 words) [view diff] exact match in snippet view article find links to article

RNA-sequencing experiment: pitfalls, challenges and perspectives". Briefings in Bioinformatics. 20 (4): 1384–1394. doi:10.1093/bib/bby007. PMID 29394315. Peterson

Personalized onco-genomics (3,272 words) [view diff] exact match in snippet view article find links to article

infrastructure for precision oncology in the panomics era". Briefings in Bioinformatics. 18 (4): 682–697. doi:10.1093/bib/bbw051. PMID 27296652. Tremblay

Tofazzal Islam (3,559 words) [view diff] exact match in snippet view article find links to article

Biotechnology, BMC Biology, PLOS Biology, Trends in Genetics, Briefings in Bioinformatics, Molecular Plant-Microbe Interactions, Applied and Environmental

Microbiome (12,348 words) [view diff] exact match in snippet view article find links to article

systems biology and in silico modeling of the human microbiome". Briefings in Bioinformatics. 13 (6): 769–780. doi:10.1093/bib/bbs022. PMID 22589385. Colarusso

Folding@home (14,601 words) [view diff] exact match in snippet view article find links to article

Tong (2009). "Recent advances in computer-aided drug design". Briefings in Bioinformatics (review). 10 (5): 579–91. doi:10.1093/bib/bbp023. PMID 19433475

Micropeptide (3,890 words) [view diff] exact match in snippet view article find links to article

proteins encoded by annotated coding and non-coding RNA loci". Briefings in Bioinformatics. 19 (4): 636–643. doi:10.1093/bib/bbx005. PMID 28137767. Hemm

Knotted protein (2,895 words) [view diff] exact match in snippet view article find links to article

(2020-09-16). "Topoly: Python package to analyze topology of polymers". Briefings in Bioinformatics. 22 (3). doi:10.1093/bib/bbaa196. ISSN 1467-5463. PMC 8138882

ANNOVAR (3,454 words) [view diff] exact match in snippet view article find links to article

facilitators of future progress in research and clinical application". Briefings in Bioinformatics. 20 (5): 1795–1811. doi:10.1093/bib/bby051. PMC 6917217. PMID 30084865

Biomedical text mining (6,754 words) [view diff] exact match in snippet view article find links to article

name? Named entity recognition in the biomedical literature". Briefings in Bioinformatics. 6 (4): 357–369. doi:10.1093/bib/6.4.357. ISSN 1467-5463. PMID 16420734

Circular RNA (6,557 words) [view diff] exact match in snippet view article find links to article

circle: current state and perspectives of circular RNA databases". Briefings in Bioinformatics. 22 (1): 288–297. doi:10.1093/bib/bbz175. PMC 7820840. PMID 31998941

Ancient protein (7,903 words) [view diff] exact match in snippet view article find links to article

de novo sequencing tools for monoclonal antibody assembly". Briefings in Bioinformatics. 24 (1). doi:10.1093/bib/bbac542. PMC 9851299. PMID 36545804

Essential gene (8,521 words) [view diff] exact match in snippet view article find links to article

methods for predicting essential genes or proteins: a survey". Briefings in Bioinformatics. 21 (2): 566–583. doi:10.1093/bib/bbz017. PMID 30776072. Hua

MicroRNA sequencing (5,200 words) [view diff] exact match in snippet view article find links to article

(2009). "Expression profiling of microRNAs by deep sequencing". Briefings in Bioinformatics. 10 (5): 490–497. doi:10.1093/bib/bbp019. ISSN 1467-5463. PMC 2733187

Exscalate4Cov (2,554 words) [view diff] exact match in snippet view article find links to article

predicting drug targets and for virtual screening against COVID-19". Briefings in Bioinformatics. 22 (2): 1053–1064. doi:10.1093/bib/bbaa422. ISSN 1467-5463.

Nvidia Parabricks (2,586 words) [view diff] exact match in snippet view article find links to article

bioinformatics, computational biology and systems biology". Briefings in Bioinformatics. 18 (5): 870–885. doi:10.1093/bib/bbw058. PMC 5862309. PMID 27402792

Cellular deconvolution (3,616 words) [view diff] exact match in snippet view article find links to article

deconvolution by multiple single-cell RNA sequencing references". Briefings in Bioinformatics. 22 (1): 416–427. doi:10.1093/bib/bbz166. PMC 7820884. PMID 31925417

Vasant Honavar (8,685 words) [view diff] exact match in snippet view article find links to article

Docking Improved Using Pairwise Interfacial Residue Restraints". Briefings in Bioinformatics. 18 (3): 458–466. doi:10.1093/bib/bbw027. PMC 5428999. PMID 27013645

Phylogenetic reconciliation (15,304 words) [view diff] exact match in snippet view article find links to article

"Models, algorithms and programs for phylogeny reconciliation". Briefings in Bioinformatics. 12 (5): 392–400. doi:10.1093/bib/bbr045. PMID 21949266. Bansal

Pandemic prevention (15,880 words) [view diff] exact match in snippet view article find links to article

2021). "Web tools to fight pandemics: the COVID-19 experience". Briefings in Bioinformatics. 22 (2): 690–700. doi:10.1093/bib/bbaa261. PMC 7665357. PMID 33057582

Nextflow (3,247 words) [view diff] exact match in snippet view article find links to article

high-throughput single-cell RNA sequencing data processing pipelines". Briefings in Bioinformatics. 22 (3). doi:10.1093/bib/bbaa116. PMID 34020539. Wratten, Laura;

Ancestral reconstruction (13,015 words) [view diff] exact match in snippet view article find links to article

"PHAST and RPHAST: phylogenetic analysis with space/time models". Briefings in Bioinformatics. 12 (1): 41–51. doi:10.1093/bib/bbq072. PMC 3030812. PMID 21278375

Generative pre-trained transformer (4,375 words) [view diff] exact match in snippet view article find links to article

pre-trained transformer for biomedical text generation and mining". Briefings in Bioinformatics. 23 (6). arXiv:2210.10341. doi:10.1093/bib/bbac409. PMID 36156661

Single-cell multi-omics integration (4,403 words) [view diff] exact match in snippet view article find links to article

single cell transcriptome and open chromatin accessibility data". Briefings in Bioinformatics. 22 (4). doi:10.1093/bib/bbaa287. ISSN 1467-5463. PMC 8293818

TMEM211 (9,001 words) [view diff] exact match in snippet view article find links to article

functional annotations within the Gene Ontology consortium". Briefings in Bioinformatics. 12 (5): 449–462. doi:10.1093/bib/bbr042. PMC 3178059. PMID 21873635

Split gene theory (8,037 words) [view diff] exact match in snippet view article find links to article

of evolution of exon-intron structure of eukaryotic genes". Briefings in Bioinformatics. 6 (2): 118–134. doi:10.1093/bib/6.2.118. ISSN 1467-5463. PMID 15975222