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Longer titles found: Multiple sequence alignment (view), List of sequence alignment software (view)

searching for Sequence alignment 257 found (578 total)

Tandy Warnow (1,206 words) [view diff] exact match in snippet view article find links to article

both in biology and in historical linguistics, and also for multiple sequence alignment methods. Warnow did both her undergraduate and graduate studies in

Gap penalty (2,483 words) [view diff] exact match in snippet view article find links to article

are constant, linear, affine, convex, and profile-based. Genetic sequence alignment - In bioinformatics, gaps are used to account for genetic mutations

BAM (file format) (374 words) [view diff] case mismatch in snippet view article

representation of a set of Sequence Alignment Map files. BAM is the compressed binary representation of SAM (Sequence Alignment Map), a compact and index-able

Zoonomia (1,193 words) [view diff] exact match in snippet view article find links to article

Lyrical Ballads (1798). Zoonomia is the project name for a genomic sequence alignment effort, started by Kerstin Lindblad-Toh in 2015, attempting to explore

David J. Lipman (1,218 words) [view diff] exact match in snippet view article find links to article

biomedical information. Lipman is one of the original authors of the BLAST sequence alignment program, and a respected figure in bioinformatics. In 2017, he left

Yass (software) (160 words) [view diff] exact match in snippet view article

YASS (Yet Another Similarity Searcher) is a free software, pairwise sequence alignment software for nucleotide sequences, that is, it can search for similarities

Clone manager (195 words) [view diff] exact match in snippet view article find links to article

graphic map drawing, primer design and analysis, global and local sequence alignment, similarity search, laboratory scale sequence assembly projects A

List of phylogenetics software (2,449 words) [view diff] exact match in snippet view article find links to article

Julie D.; Gibson, Toby J.; Higgins, Des G. (August 2002). "Multiple sequence alignment using ClustalW and ClustalX". Current Protocols in Bioinformatics

Paulien Hogeweg (1,193 words) [view diff] exact match in snippet view article find links to article

developed a tree based algorithm for multiple sequence alignment. which is now common practice in sequence alignment and phylogeny. At about the same time she

GOLGA8H (1,378 words) [view diff] exact match in snippet view article find links to article

q13.2 in Homo sapiens: There are no isoforms of GOLGA8H. A multiple sequence alignment (MSA) of GOLGA8H and its top seven paralogs was created using Clustal

Leiosauridae (223 words) [view diff] case mismatch in snippet view article find links to article

Richard; Janies, Daniel; Titus, Tom A. (2001). "Total Evidence, Sequence Alignment, Evolution of Polychrotid Lizards, and a Reclassification of the Iguania

CCDC142 (1,832 words) [view diff] case mismatch in snippet view article find links to article

Ortholog Multiple Sequence Alignment of CCDC142 Purple=Similar Amino Acid Chemistry Blue=Same Amino Acid In the Multiple Sequence Alignment above (created

List of genetic algorithm applications (2,517 words) [view diff] case mismatch in snippet view article find links to article

bearing placement Computer-automated design Bioinformatics Multiple Sequence Alignment Bioinformatics: RNA structure prediction Bioinformatics: Motif Discovery

Lorraine Lisiecki (979 words) [view diff] exact match in snippet view article find links to article

Software designed using a Hidden Markov Model (HMM) for probabilistic sequence alignment of stratigraphic records. Paleoceanography software designed to find

Gad Landau (1,254 words) [view diff] exact match in snippet view article find links to article

papers on modeling digitized images and 2D matching, incremental sequence alignment, and recently, his work on jumbled pattern matching and compressed

UCSC Genome Browser (3,800 words) [view diff] exact match in snippet view article find links to article

(BLAST-like alignment tool) and LiftOver were introduced to enhance sequence alignment and coordinate conversion between different genome assemblies. Between

FAM76A (2,200 words) [view diff] case mismatch in snippet view article find links to article

domain contains mostly polar amino acids. Distant Ortholog Multiple Sequence Alignment of FAM76A Purple=Similar Amino Acid Chemistry Blue=Same Amino Acid

Heng Li (736 words) [view diff] exact match in snippet view article find links to article

of disease. As of December 2018, Li's papers on SAMtools and BWA (sequence alignment using the Burrows–Wheeler transform) have both been cited over 16

Novel coronavirus (864 words) [view diff] exact match in snippet view article find links to article

1542–1547. doi:10.3201/eid2607.200092. PMC 7323513. PMID 32315281. Sequence alignment around the RBD supported potential recombination between SARSr-Ra-BatCoV

Nuisance variable (394 words) [view diff] case mismatch in snippet view article find links to article

R. (2008). Rost, Burkhard (ed.). "A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation". PLOS Computational

Iguania (822 words) [view diff] case mismatch in snippet view article find links to article

Richard; Janies, Daniel; Titus, Tom A. (June 2001). "Total Evidence, Sequence Alignment, Evolution of Polychrotid Lizards, and a Reclassification of the Iguania

CCDC138 (1,132 words) [view diff] exact match in snippet view article find links to article

missing 88 amino acids at the C-terminus. Figure shows the pairwise sequence alignment comparing the primary isoform (Isoform 1) to the secondary isoform

Conolophus (159 words) [view diff] case mismatch in snippet view article find links to article

; Etheridge, R.; Janies, D.; Titus, T.A. (2001) "Total Evidence, Sequence Alignment, Evolution of Polychrotid Lizards, and a Reclassification of the Iguania

Mikhail Gelfand (397 words) [view diff] exact match in snippet view article find links to article

M. S., Mironov A. A., Pevzner P. A. Gene recognition via spliced sequence alignment // Proceedings of the National Academy of Sciences. 1996. V. 93. P

Dihydroorotate dehydrogenase (1,324 words) [view diff] exact match in snippet view article find links to article

state, subcellular localization, and membrane association. An overall sequence alignment of these DHODH variants presents two classes of DHODHs: the cytosolic

Tityustoxin peptide 2 (489 words) [view diff] exact match in snippet view article find links to article

tyrosine amide is present in the 55th position. Furthermore, TsPep2 sequence alignment shows that a part of the amino acid consensus sequence (CXXXKCCXC)

TSBP1 (1,698 words) [view diff] case mismatch in snippet view article find links to article

"Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 6 May 2019. "MView < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac

Structural alignment software (866 words) [view diff] exact match in snippet view article find links to article

topology-independent superposition of RNA 3D structures and structure-based sequence alignment". Nucleic Acids Research. 52 (18): 10850–10861. doi:10.1093/nar/gkae758

Frenkelia (451 words) [view diff] exact match in snippet view article find links to article

Jäkel T, Heckeroth AR, Tenter AM, Johnson AM (2000). "Effects of sequence alignment and structural domains of ribosomal DNA on phylogeny reconstruction

BGZF (1,264 words) [view diff] case mismatch in snippet view article find links to article

core component of the common BAM format (the binary version of the Sequence Alignment Map format) and is also used to compress and index Variant Call Format

List of molecular graphics systems (662 words) [view diff] exact match in snippet view article find links to article

source?] Includes single/multiple sequence viewer, structure-based sequence alignment, automatic sequence-structure crosstalk for integrated analyses. VMD

SAAL1 (2,146 words) [view diff] exact match in snippet view article find links to article

these orthologs, it is the only member of its gene family. A multiple sequence alignment of the vertebrate homologs demonstrated high conservation of the protein

Protein kinase (1,701 words) [view diff] case mismatch in snippet view article find links to article

V; Dunbrack, RL (2019-12-24). "A Structurally-Validated Multiple Sequence Alignment of 497 Human Protein Kinase Domains". Scientific Reports. 9 (1): 19790

C16orf86 (2,442 words) [view diff] exact match in snippet view article find links to article

C16orf86 human protein sequence in the program Clustal Omega multiple sequence alignment. The results had promoter GXP_107609 match more closely in its sequence

Tandem repeat (1,470 words) [view diff] exact match in snippet view article find links to article

(September 2023). "UniAligner: a parameter-free framework for fast sequence alignment". Nature Methods. 20 (9): 1346–1354. bioRxiv 10.1101/2022.09.15.507041

Hp53int1 (1,632 words) [view diff] exact match in snippet view article find links to article

paralogs. Using NCBI BLAST sequence analysis and Clustal W a multiple sequence alignment was formulated for Hp53int1 and twenty top BLAST hits. While the objective

Stephen Altschul (527 words) [view diff] no match in snippet view article find links to article

Massachusetts Institute of Technology. His research interest centers around sequence-alignment algorithms, statistics of sequence comparison, and measurement of

Ergtoxin (1,169 words) [view diff] exact match in snippet view article find links to article

gland of the Mexican scorpion Centruroides noxius, Based on primary sequence alignment, there are 27 different ɣ-KTx's, all of which belong to the larger

Capnocytophaga (1,803 words) [view diff] exact match in snippet view article find links to article

CblA and 51% between nucleotide sequences. A comparison with protein sequence alignment by cepA with other beta- lactamases reveals the conservation of at

Mir-96 microRNA (828 words) [view diff] exact match in snippet view article find links to article

A multiple sequence alignment of precursor miR-96 molecules. Highly conserved nucleotides are coloured in red, less well conserved nucleotides are coloured

ARB Project (293 words) [view diff] exact match in snippet view article find links to article

The package contains additional tools for data import and export, sequence alignment, primary and secondary structure editing, profile and filter calculation

Glycosyltransferase (1,569 words) [view diff] exact match in snippet view article find links to article

powerful way of generating hypotheses for protein function based on sequence alignment to related proteins. The carbohydrate-active enzyme database presents

PROSER3 (2,018 words) [view diff] case mismatch in snippet view article find links to article

206 and DDILYQWR...RRKLEQA at aa 463. The figures titled "Multiple Sequence Alignment of Distant PROSER3 Orthologs" show a snippet of the most important

C1orf167 (1,196 words) [view diff] case mismatch in snippet view article find links to article

ncbi.nlm.nih.gov. Retrieved 2019-04-22. "Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2019-04-22. "C1orf167 protein

Zinc finger protein 684 (948 words) [view diff] case mismatch in snippet view article find links to article

useast.ensembl.org. Retrieved 2023-12-15. "Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2023-12-15. "ZNF684 protein

R.EcoRII (691 words) [view diff] exact match in snippet view article find links to article

restriction endonuclease superfamily (SCOP 52980). Structure-based sequence alignment and site-directed mutagenesis identified the putative PD..D/EXK active

Stockholm (disambiguation) (430 words) [view diff] exact match in snippet view article

persistent organic pesticides Stockholm format, a text-based multiple sequence alignment format Stockholm syndrome, a psychological phenomenon Stockholm tar

List of reptiles (593 words) [view diff] case mismatch in snippet view article find links to article

Richard; Janies, Daniel; Titus, Tom A. (June 2001). "Total Evidence, Sequence Alignment, Evolution of Polychrotid Lizards, and a Reclassification of the Iguania

Tree-Puzzle (205 words) [view diff] exact match in snippet view article find links to article

"Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment". Proc. Natl. Acad. Sci. USA. 94 (13): 6815–6819. Bibcode:1997PNAS

Distributed Annotation System/Clients (52 words) [view diff] exact match in snippet view article find links to article

corresponding annotations from multiple data sources [5] Jalview A multiple sequence alignment editor & viewer [6] OmniGene The user interface is based on the EnsEMBL

SH3D21 (752 words) [view diff] case mismatch in snippet view article find links to article

1007/bf02759663. S2CID 8301557. "BLAST". NCBI. Retrieved 3 May 2013. "Sequence Alignment". ALIGN. Archived from the original on 11 August 2003. Retrieved 8

Iguanidae (1,598 words) [view diff] exact match in snippet view article find links to article

Frost, R. Etheridge, D. Janies & T.A. Titus (2001) Total evidence, sequence alignment, evolution of polychrotid lizards, and a reclassification of the Iguania

Muscle (disambiguation) (353 words) [view diff] exact match in snippet view article

Government from 1946 to 1951 MUSCLE (alignment software), a multiple sequence alignment tool MUSCLE, non-Windows API to Common Access Cards Search for "muscle"

ESyPred3D (248 words) [view diff] exact match in snippet view article find links to article

Kim, Dongsup (December 2007). "Predicting and improving the protein sequence alignment quality by support vector regression". BMC Bioinformatics. 8 (1):

Cigar (disambiguation) (287 words) [view diff] exact match in snippet view article

Instruments, Gas, Attitude, Run-Up) CIGAR string, a representation of sequence alignment in Bioinformatics (Compact Idiosyncratic Gapped Alignment Report)

CXorf65 (1,290 words) [view diff] exact match in snippet view article find links to article

Human CXorf65 annotated strict ortholog multiple sequence alignment.

FAM131A (929 words) [view diff] case mismatch in snippet view article find links to article

network". string-db.org. Retrieved 2022-12-16. "EMBOSS Needle < Pairwise Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2022-12-16. "TimeTree :: The

SUHW4 (1,179 words) [view diff] exact match in snippet view article find links to article

Multiple sequence alignment of orthologs for DUF4195 reveals low conservation.

Nepenthes malayensis (1,070 words) [view diff] exact match in snippet view article find links to article

having morphological and geographical differences, the 610 bp rRNA-ITS sequence alignment shows N. malayensis shares the highest sequence similarity (99.84%)

Brachylophus (1,008 words) [view diff] exact match in snippet view article find links to article

Etheridge, R.E.; Janies, D. & Titus, T.A. (2001): Total evidence, sequence alignment, evolution of Polychrotid lizards, and a reclassification of the Iguania

SUCLG2 (862 words) [view diff] exact match in snippet view article find links to article

the SCS variant containing the SUCLG2-encoded β subunit. Amino acid sequence alignment of the two β subunit types reveals a homology of ~50% identity, with

List of filename extensions (S–Z) (603 words) [view diff] exact match in snippet view article

presentation template OpenOffice.org Impress STK Stockholm multiple sequence alignment Bioinformatics tools eg HMMER, Xrate, Jalview STL surface geometry

Dendrotoxin (1,665 words) [view diff] exact match in snippet view article find links to article

Sequence alignment of dendrotoxins and BPTI. Amino acid residues with similar properties are colored accordingly.

G-test (2,518 words) [view diff] exact match in snippet view article find links to article

program (used by Rfam) uses G-test to detect co-variation between RNA sequence alignment positions. In R fast implementations can be found in the AMR and Rfast

General bacterial porin family (960 words) [view diff] exact match in snippet view article find links to article

F, Jeanteur D, Lakey JH (1991). "The bacterial porin superfamily: sequence alignment and structure prediction". Mol. Microbiol. 5 (9): 2153–2164. doi:10

Austric languages (1,834 words) [view diff] exact match in snippet view article find links to article

Gerhard (2015). "Support for linguistic macrofamilies from weighted sequence alignment". PNAS. 112 (41): 12752–12757. Bibcode:2015PNAS..11212752J. doi:10

C9orf25 (760 words) [view diff] case mismatch in snippet view article find links to article

"Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". ebi.ac.uk. Retrieved 2018-05-11. "Multiple Sequence Alignment - CLUSTALW". genome.jp. Retrieved

EF hand (2,077 words) [view diff] exact match in snippet view article find links to article

predict continuous EF-hand Ca2+-binding sites in proteins. Based on the sequence alignment results of canonical EF-hand motifs, especially the conserved side

Desert iguana (1,080 words) [view diff] exact match in snippet view article find links to article

R., R. Etheridge, D. Janies and T.A. Titus (2001) Total evidence, sequence alignment, evolution of Polychrotid lizards, and a reclassification of the Iguania

FAM71E1 (1,234 words) [view diff] case mismatch in snippet view article find links to article

www.nextprot.org. SIB Swiss Institute of Bioinformatics. "Multiple Sequence Alignment - CLUSTALW". www.genome.jp. Kyoto University Bioinformatics Center

METTL26 (1,306 words) [view diff] exact match in snippet view article find links to article

distantly related species, such as Xenopus tropicalis. A multiple sequence alignment conducted using the SDSC Biology Workbench reveals little sequence

GPATCH2L (1,905 words) [view diff] exact match in snippet view article find links to article

sequence alignment. Especially, 3-8) includes hsa-miRNA-205 in its stem-loop, and every letter of hsa-miRNA-205 is conserved in the multiple sequence

TMEM169 (1,441 words) [view diff] exact match in snippet view article find links to article

orthologs shown by the following multiple sequence alignment created Clustal using BoxShade. The multiple sequence alignment of distant orthologs highlighting

TMEM229B (639 words) [view diff] exact match in snippet view article find links to article

phosphorylation site exists at the Threonine-139 position. See multiple sequence alignment below. Annotated diagram of the TMEM229b gene (with its 3 exons),

DEPDC1B (2,264 words) [view diff] exact match in snippet view article find links to article

possesses two significant paralogs - DEPDC1A and DEPDC7 Multiple sequence alignment and phylogenetic analysis indicates DEPDC1A as the most recent paralog

TMEM19 (1,144 words) [view diff] case mismatch in snippet view article find links to article

related to cytochrome c. TMEM19 Strict Orthologs (Vertebrates) Multiple Sequence Alignment. Sequences were aligned using ClustalO, transmembrane regions and

Ctenosaura (885 words) [view diff] exact match in snippet view article find links to article

Frost DR, Etheridge R, Janies D, Titus TA (2001). "Total evidence, sequence alignment, evolution of Polychrotid lizards, and a reclassification of the Iguania

Keratin (2,707 words) [view diff] exact match in snippet view article find links to article

Protein sequence alignment of human keratin 1, 2A, 3,4, 5, 6A, 7, and 8 (KRT1 – KRT8). Only the first rod domain is shown above. Alignment was created

CUDA (4,348 words) [view diff] exact match in snippet view article find links to article

Cole; Delcher, Arthur L.; Varshney, Amitabh (2007). "High-throughput sequence alignment using Graphics Processing Units". BMC Bioinformatics. 8: 474. doi:10

Serine/threonine-specific protein kinase (1,210 words) [view diff] case mismatch in snippet view article find links to article

Dunbrack, RL (24 December 2019). "A Structurally-Validated Multiple Sequence Alignment of 497 Human Protein Kinase Domains". Scientific Reports. 9 (1): 19790

Iguana (2,876 words) [view diff] exact match in snippet view article find links to article

; Etheridge, R.; Janies, D.; Titus, T.A. (2001). "Total evidence, sequence alignment, evolution of polychrotid lizards, and a reclassification of the Iguania

Glucose 6-phosphatase (2,536 words) [view diff] exact match in snippet view article find links to article

exact structure of glucose 6-phosphatase remains unknown. However, sequence alignment has shown that glucose 6-phosphatase is structurally similar to the

TNNT1 (1,998 words) [view diff] exact match in snippet view article find links to article

shows that cTnI-ssTnT is the newest and most closely linked. Protein sequence alignment demonstrated that TNNT1 genes are highly conserved among vertebrate

Transmembrane protein 89 (2,216 words) [view diff] exact match in snippet view article find links to article

orthologs of human TMEM89. These orthologs were used to make the multiple sequence alignment and N-myristylation site alignment to the right. Regions within the

Gene Codes Corporation (669 words) [view diff] exact match in snippet view article find links to article

depth analysis within customer data set. General Analysis Reference sequence alignment Variance Table Extensive import and export capabilities NCBI BLAST

Kimmen Sjölander (504 words) [view diff] exact match in snippet view article find links to article

and ortholog classification, remote homology detection, multiple sequence alignment, and phylogenetic tree estimation. Her algorithms were used in the

INAVA (1,233 words) [view diff] exact match in snippet view article find links to article

be INAVA paralogs are not consistent between databases. A multiple sequence alignment (MSA) of potentially paralogous proteins was made to determine the

General-purpose computing on graphics processing units (7,039 words) [view diff] exact match in snippet view article find links to article

Cole; Delcher, Arthur L; Varshney, Amitabh (2007). "High-throughput sequence alignment using Graphics Processing Units". BMC Bioinformatics. 8 474. doi:10

Jpred (593 words) [view diff] exact match in snippet view article find links to article

2015. Cuff, JA; Barton, GJ (August 2000). "Application of multiple sequence alignment profiles to improve protein secondary structure prediction". Proteins

Group II pyridoxal-dependent decarboxylases (256 words) [view diff] exact match in snippet view article find links to article

important residues of aromatic L-amino acid decarboxylase probed by sequence alignment and site-directed mutagenesis". J. Biochem. 120 (2): 369–76. doi:10

Group II pyridoxal-dependent decarboxylases (256 words) [view diff] exact match in snippet view article find links to article

important residues of aromatic L-amino acid decarboxylase probed by sequence alignment and site-directed mutagenesis". J. Biochem. 120 (2): 369–76. doi:10

Victoria (plant) (1,252 words) [view diff] exact match in snippet view article

K., Borsch, T., & Gruenstaeudl, M. (2024). On the importance of sequence alignment inspections in plastid phylogenomics–an example from revisiting the

C3orf38 (944 words) [view diff] case mismatch in snippet view article find links to article

ncbi.nlm.nih.gov. Retrieved 2021-12-17. "EMBOSS Needle < Pairwise Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2021-12-17. "TimeTree :: The

David T. Jones (biochemist) (1,324 words) [view diff] exact match in snippet view article

whole/individual protein sequences. The method uses a traditional sequence alignment algorithm to generate alignments, and then the alignment will be evaluated

LOC101928193 (2,192 words) [view diff] case mismatch in snippet view article find links to article

PMC 11136179. PMID 16568238. S2CID 14403230. "Multiple Sequence Alignment". Multiple Sequence Alignment. ClustalW. "TimeTree of Life". TimeTree. "WebLogo Database"

TPM2 (2,750 words) [view diff] exact match in snippet view article find links to article

339I. doi:10.1073/pnas.85.2.339. PMC 279543. PMID 2963328. "Protein sequence alignment of human TPM1 and TPM2". Uniprot Knowledgebase. Retrieved 2 July 2015

MYL7 (2,346 words) [view diff] exact match in snippet view article find links to article

701–13. doi:10.1083/jcb.114.4.701. PMC 2289899. PMID 1869586. "Protein sequence alignment for human cardiac atrial and ventricular regulatory light chains"

Popperaneus (202 words) [view diff] exact match in snippet view article find links to article

Hormiga, G. (2020). "Exploring the impact of morphology, multiple sequence alignment and choice of optimality criteria in phylogenetic inference: a case

LSMEM2 (1,283 words) [view diff] case mismatch in snippet view article find links to article

ncbi.nlm.nih.gov. Retrieved 2020-05-01. "Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2020-05-01. "Home - Protein

Nymphaea nouchali (2,092 words) [view diff] exact match in snippet view article find links to article

Borsch, Thomas; Gruenstaeudl, Michael (2024). "On the importance of sequence alignment inspections in plastid phylogenomics – an example from revisiting

TMEM144 (1,186 words) [view diff] exact match in snippet view article find links to article

Multiple sequence alignment of human Transmembrane Protein 144 with vertebrate orthologs. Some amino acids in the ortholog sequences were cut out at the

K shortest path routing (1,245 words) [view diff] exact match in snippet view article find links to article

path algorithms. Hypothesis generation in computational linguistics Sequence alignment and metabolic pathway finding in bioinformatics Multiple object tracking

PSIPRED (936 words) [view diff] exact match in snippet view article find links to article

; Barton, Geoffrey A. (15 August 2000). "Application of multiple sequence alignment profiles to improve protein secondary structure prediction". Proteins

NBPF1 (2,276 words) [view diff] exact match in snippet view article find links to article

This shows the predicted relationship between NBPF1 similarity based on a multiple sequence alignment.

Richard M. Durbin (2,101 words) [view diff] exact match in snippet view article find links to article

Cambridge. OCLC 499178924. EThOS uk.bl.ethos.233920. Birney, Ewan (2000). Sequence alignment in bioinformatics. cam.ac.uk (PhD thesis). University of Cambridge

WPGMA (1,714 words) [view diff] exact match in snippet view article find links to article

a JC69 genetic distance matrix computed from the 5S ribosomal RNA sequence alignment of five bacteria: Bacillus subtilis ( a {\displaystyle a} ), Bacillus

C17orf53 (1,349 words) [view diff] case mismatch in snippet view article find links to article

blast.ncbi.nlm.nih.gov. Retrieved 2018-05-06. "ClustalW2 < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2018-05-06. "BLAST: Basic Local

Enyalius boulengeri (264 words) [view diff] exact match in snippet view article find links to article

Frost DR, Etheridge R, Janies D, Titus TA (2001). "Total evidence, sequence alignment, evolution of polychrotid lizards, and a reclassification of the Iguania

CS23D (1,141 words) [view diff] exact match in snippet view article find links to article

- prediction of secondary structure from chemical shifts BLAST - sequence alignment, homology search PROTEUS2 - homology modelling PREDITOR - prediction

TMEM8B (1,700 words) [view diff] case mismatch in snippet view article find links to article

c9orf127 Time Tree http://www.timetree.org/resources Clustal W, Multiple Sequence Alignment Andersson B, Wentland MA, Ricafrente JY, Liu W, Gibbs RA (April 1996)

SCRN3 (1,303 words) [view diff] exact match in snippet view article find links to article

Multiple Sequence alignment of Human SCRN3 protein and its human paralogs, SCRN2 and SCRN1. Dark Shading indicates exact amino acid matches. Light shading

Anytime A* (790 words) [view diff] exact match in snippet view article find links to article

ISBN 978-0-85224-176-9. OCLC 1067280266. Zhou, R.; Hansen, E.A. (2002). Multiple sequence alignment using A* (PDF). Eighteenth national conference on Artificial intelligence

Single-linkage clustering (2,496 words) [view diff] exact match in snippet view article find links to article

a JC69 genetic distance matrix computed from the 5S ribosomal RNA sequence alignment of five bacteria: Bacillus subtilis ( a {\displaystyle a} ), Bacillus

ZFP36 (1,069 words) [view diff] no match in snippet view article find links to article

Taylor GA, Lai WS, Oakey RJ, et al. (1991). "The human TTP protein: sequence, alignment with related proteins, and chromosomal localization of the mouse

C1orf185 (1,223 words) [view diff] exact match in snippet view article find links to article

identities and similarities were found using the Clustal Omega multiple sequence alignment tool. Compared to other genes, C1orf185 appears to be evolving and

Multimedia information retrieval (1,294 words) [view diff] exact match in snippet view article find links to article

warping – a semantically related method – is state-of-the-art in gene sequence alignment. The list of applicable classifiers includes the following: Metric

Complete-linkage clustering (2,170 words) [view diff] exact match in snippet view article find links to article

a JC69 genetic distance matrix computed from the 5S ribosomal RNA sequence alignment of five bacteria: Bacillus subtilis ( a {\displaystyle a} ), Bacillus

Gonçalo Abecasis (1,074 words) [view diff] case mismatch in snippet view article find links to article

Durbin, R.; 1000 Genome Project Data Processing Subgroup (2009). "The Sequence Alignment/Map format and SAMtools". Bioinformatics. 25 (16): 2078–2079. doi:10

CCDC190 (2,087 words) [view diff] exact match in snippet view article find links to article

5' UTR and 3' UTR region of human ccdc190 mRNA based on multiple sequence alignment results, they can be potential RNA binding protein and miRNA binding

Protein tandem repeats (1,832 words) [view diff] exact match in snippet view article find links to article

Example multiple sequence alignment of a pentapeptide repeat leading to a tandem repeat structure

Echinophthiriidae (982 words) [view diff] exact match in snippet view article find links to article

partitioned maximum likelihood phylogenetic tree based on a concatenated sequence alignment of 1022 nuclear genes taken from louse species, with their hosts listed

Protein kinase domain (1,562 words) [view diff] case mismatch in snippet view article find links to article

Dunbrack, RL (24 December 2019). "A Structurally-Validated Multiple Sequence Alignment of 497 Human Protein Kinase Domains". Scientific Reports. 9 (1): 19790

Trinucleotide repeat containing 18 (1,213 words) [view diff] exact match in snippet view article find links to article

sequence identify and similarity percentages were found by a pairwise sequence alignment using the European Bioinformatics Institute (EMBL-EBI) EMBOSS Needle

Nymphaea thermarum (1,396 words) [view diff] exact match in snippet view article find links to article

K., Borsch, T., & Gruenstaeudl, M. (2024). On the importance of sequence alignment inspections in plastid phylogenomics–an example from revisiting the

TBC1D30 (1,168 words) [view diff] case mismatch in snippet view article find links to article

Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2021-12-09. "Standard Protein BLAST". BLAST. NCBI. "Multiple Sequence Alignment". Clustal

Diaminopimelate epimerase (758 words) [view diff] exact match in snippet view article find links to article

two domains which are similar in structure though they share little Sequence alignment. Each domain consists of mixed beta-sheets which fold into a barrel

Rockport virus (320 words) [view diff] exact match in snippet view article find links to article

PMC 3147906. PMID 21632770. Hall T. A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp

Transmembrane protein 151b (810 words) [view diff] case mismatch in snippet view article find links to article

www.genecards.org. Retrieved 2022-01-13. "Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2022-01-13. "TimeTree :: The

Nymphaea (4,062 words) [view diff] exact match in snippet view article find links to article

Borsch, Thomas; Gruenstaeudl, Michael (2024). "On the importance of sequence alignment inspections in plastid phylogenomics – an example from revisiting

Francis Y. L. Chin (720 words) [view diff] case mismatch in snippet view article find links to article

T.W. Lam, and Prudence W.H. Wong, "Efficient Constrained Multiple Sequence Alignment with Performance Guarantee", Journal of Bioinformatics and Computational

Zipf's law (4,634 words) [view diff] exact match in snippet view article find links to article

Evaluation of the suitability of a Zipfian gap model for pairwise sequence alignment (PDF). International Conference on Bioinformatics Computational Biology

MROH9 (2,174 words) [view diff] case mismatch in snippet view article find links to article

genome.ucsc.edu. Retrieved 2022-12-16. "Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2022-12-16. "I-TASSER results"

KIAA0895L (673 words) [view diff] exact match in snippet view article find links to article

Fuchs R (April 1992). "CLUSTAL V: improved software for multiple sequence alignment". Comput. Appl. Biosci. 8 (2): 189–91. doi:10.1093/bioinformatics/8

Oregon State University College of Science (1,676 words) [view diff] exact match in snippet view article find links to article

Waterman, co-inventor of the Smith-Waterman algorithm used in DNA sequence alignment. Holds an Endowed Associates Chair in Biological Sciences, Mathematics

BioSLAX (2,207 words) [view diff] exact match in snippet view article find links to article

applications Web access to ClustalW multiple sequence alignment Web access to the T-Coffee multiple sequence alignment Web access to the PHYLIP Phylogenetic

SUCLA2 (1,745 words) [view diff] exact match in snippet view article find links to article

the SCS variant containing the SUCLA2-encoded β subunit. Amino acid sequence alignment of the two β subunit types reveals a homology of ~50% identity, with

Root mean square deviation of atomic positions (1,268 words) [view diff] exact match in snippet view article find links to article

Moretti S, Keduas V, Notredame C (2006). "The iRMSD: a local measure of sequence alignment accuracy using structural information" (PDF). Bioinformatics. 22 (14):

Paraverrucosa (368 words) [view diff] exact match in snippet view article find links to article

Hormiga, G. (2020). "Exploring the impact of morphology, multiple sequence alignment and choice of optimality criteria in phylogenetic inference: a case

Phylogenetics (6,863 words) [view diff] exact match in snippet view article find links to article

method's sampling impact the number of nucleotide sites utilized in a sequence alignment, which may contribute to disagreements. For example, phylogenetic

Transmembrane protein 179 (1,588 words) [view diff] exact match in snippet view article find links to article

A multiple sequence alignment of orthologous transmembrane protein 179 sequences from various species. The sequences are named with the first letter of

Felsenstein's tree-pruning algorithm (862 words) [view diff] exact match in snippet view article find links to article

data D {\displaystyle D} ( D {\displaystyle D} being a nucleotide sequence alignment for example i.e. a succession of n {\displaystyle n} DNA site s {\displaystyle

List of phylogenetic tree visualization software (1,650 words) [view diff] exact match in snippet view article find links to article

and produce vector artwork. All JEvTrace A multivalent browser for sequence alignment, phylogeny, and structure. Performs an interactive Evolutionary Trace

LRRC40 (678 words) [view diff] exact match in snippet view article find links to article

Lopez R, Gibson TJ, Higgins DG, Thompson JD (July 2003). "Multiple sequence alignment with the Clustal series of programs". Nucleic Acids Res. 31 (13):

Putative uncharacterized protein C6orf52 (699 words) [view diff] exact match in snippet view article find links to article

Multiple sequence alignment for multiple orthologs of C6orf52. A high conservation domain begins near the last third of the polypeptide sequence.

Bacterial Leucine Transporter (1,198 words) [view diff] exact match in snippet view article find links to article

success has paved the way to a better comprehension of this process. Sequence alignment between the human serotonin transporter and LeuT, generated using

Ribosomal RNA (7,209 words) [view diff] exact match in snippet view article find links to article

Glöckner FO (July 2012). "SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes". Bioinformatics. 28 (14): 1823–9. doi:10

AceDB (359 words) [view diff] case mismatch in snippet view article find links to article

AceDB Multiple Sequence Alignment View

FAM204A (1,003 words) [view diff] case mismatch in snippet view article find links to article

Multiple Sequence Alignment". European Bioinformatics Institute (EMBL‑EBI). Retrieved 6 July 2025. "EMBOSS Needle: Pairwise Sequence Alignment". European

Protein–protein interaction prediction (2,915 words) [view diff] exact match in snippet view article find links to article

sequence similarity to both proteins A and B. Figure B depicts the BLAST sequence alignment of Succinyl coA Transferase with its two separate homologs in E. coli

Threading (protein sequence) (2,013 words) [view diff] exact match in snippet view article

many cases. In practice, when the sequence identity in a sequence sequence alignment is low (i.e. <25%), homology modeling may not produce a significant

C5orf24 (1,663 words) [view diff] case mismatch in snippet view article find links to article

2016-08-26. Retrieved 10 December 2021. "EMBOSS Needle < Pairwise Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2021-12-17. "Vital-IT - Competence

WD Repeat and Coiled Coil Containing Protein (3,108 words) [view diff] exact match in snippet view article find links to article

There is one conserved glycation site detected through a multiple sequence alignment, lysine 389. The table below shows a list of orthologs, the evolutionary

Alpha-1-B glycoprotein (1,387 words) [view diff] exact match in snippet view article find links to article

Fuchs R (April 1992). "CLUSTAL V: improved software for multiple sequence alignment". Comput. Appl. Biosci. 8 (2): 189–91. doi:10.1093/bioinformatics/8

THAP3 (2,330 words) [view diff] case mismatch in snippet view article find links to article

1093/molbev/msac174. PMC 9400175. PMID 35932227. "EMBOSS Needle < Pairwise Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2022-12-08. "THAP domain-containing

LRRC24 (949 words) [view diff] exact match in snippet view article find links to article

1994). "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight

C12orf54 (415 words) [view diff] case mismatch in snippet view article find links to article

Multiple Sequence Alignment of C12orf54 Mammal Ortholog Protein Sequences

Tracy–Widom distribution (5,042 words) [view diff] exact match in snippet view article find links to article

(2005), "Exact asymptotic results for the Bernoulli matching model of sequence alignment", Physical Review E, 72 (2): 020901, 4, arXiv:q-bio/0410012, Bibcode:2005PhRvE

C15orf39 (1,095 words) [view diff] case mismatch in snippet view article find links to article

Protein - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-05-06. "Multiple Sequence Alignment - CLUSTALW". www.genome.jp. Retrieved 2018-05-06. "TimeTree :: The

Support vector machine (9,071 words) [view diff] exact match in snippet view article find links to article

labels, for example parse trees, classification with taxonomies, sequence alignment and many more. A version of SVM for regression was proposed in 1996

FAM193A (1,028 words) [view diff] exact match in snippet view article find links to article

range = 0.0-0.0), these along with others were used make a multiple sequence alignment (MSA). The MSA of the closest clade to humans all fell under the same

TMEM212 (1,652 words) [view diff] exact match in snippet view article find links to article

reptiles, birds, amphibians and fish. As displayed in the multiple sequence alignment to the right, strict orthologs such as mammals and reptiles have highly

TMEM82 (1,208 words) [view diff] case mismatch in snippet view article find links to article

Multiple Sequence Alignment of TMEM82 Orthologs in Mammals

C11orf16 (722 words) [view diff] exact match in snippet view article find links to article

The multiple sequence alignment shows the conservation of the gene C11orf16

SOGA2 (1,559 words) [view diff] exact match in snippet view article find links to article

A comparison of multiple sequence alignment of the N-terminal regions vs. C-terminal regions of distantly related SOGA2 orthologs. Here it is demonstrated

BMERB1 (820 words) [view diff] case mismatch in snippet view article find links to article

www.uniprot.org. Retrieved 2022-07-29. "EMBOSS Needle < Pairwise Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2022-07-29. "SAPS < Sequence

Warren Gish (1,744 words) [view diff] exact match in snippet view article find links to article

developing the first BLAST suite of programs to combine rapid gapped sequence alignment with statistical evaluation methods appropriate for gapped alignment

Ctenophora (10,174 words) [view diff] exact match in snippet view article find links to article

In agreement with the latter point, the analysis of a very large sequence alignment at the metazoan taxonomic scale (1,719 proteins totalizing c. 400

Stanisław Ulam (8,290 words) [view diff] exact match in snippet view article find links to article

writing that Ulam had only modest influence on early development of sequence alignment methods.). Colleagues noted that some of his greatest contributions

TNNT2 (4,856 words) [view diff] exact match in snippet view article find links to article

expressed together with ssTnI gene in embryonic cardiac muscle. Protein sequence alignment demonstrated that TNNT2 gene is conserved in vertebrate species (Fig

Enhancer (genetics) (6,035 words) [view diff] exact match in snippet view article

show any appreciable sequence conservation detectable by standard sequence alignment methods such as BLAST. The enhancers determining early segmentation

EBI Search (1,367 words) [view diff] exact match in snippet view article find links to article

tools (e.g., BLAST for sequence analysis, Clustal Omega for multiple sequence alignment) from selected search results RSS Alerts: Users can create RSS feeds

PRR16 (925 words) [view diff] case mismatch in snippet view article find links to article

Immune Response". www.innatedb.com. Retrieved 2019-08-04. "Multiple Sequence Alignment - CLUSTALW". www.genome.jp. Retrieved 2019-07-03. "TimeTree :: The

Speech recognition (12,869 words) [view diff] exact match in snippet view article find links to article

the sequences are "warped" non-linearly to match each other. This sequence alignment method is often used in the context of hidden Markov models. Neural

C16orf46 (848 words) [view diff] case mismatch in snippet view article find links to article

nih.gov. Retrieved 2018-05-07. EMBL-EBI. "Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2018-05-07. Lab, Mike Tyers

MIPOL1 (1,977 words) [view diff] exact match in snippet view article find links to article

echinoderms, arthropods, molluscs, cnidaria and placozoa. Multiple sequence alignment with distant orthologs indicates poor alignment in the N-terminus

OrthoDB (1,604 words) [view diff] exact match in snippet view article find links to article

progressively build the clusters and requires an overall minimum sequence alignment overlap to avoid domain walking. These core clusters are further expanded

TMEM131 (1,128 words) [view diff] exact match in snippet view article find links to article

Lopez R, Gibson TJ, Higgins DG, Thompson JD (July 2003). "Multiple sequence alignment with the Clustal series of programs". Nucleic Acids Res. 31 (13):

Plant-specific insert (1,455 words) [view diff] exact match in snippet view article find links to article

those of NK-lysin, another member of the SAPLIP group. Moreover, sequence alignment between NK-lysin and PSI reveals that the relative positions of the

Ilham Shahmuradov (807 words) [view diff] exact match in snippet view article find links to article

Chervonenkis AYa, Gammerman A.J., Shahmuradov IA, Solovyev VV (2003). Sequence alignment kernel for recognition of promoter regions. Bioinformatics, 19, 1964–1971

Morn repeat containing 1 (1,434 words) [view diff] exact match in snippet view article find links to article

sites that were conserved among orthologs. See image of the Multiple Sequence alignment and Texshade. The Membrane Occupation and Recognition Nexus is a repeat

TMEM269 (1,327 words) [view diff] case mismatch in snippet view article find links to article

Multiple Sequence Alignment of TMEM269 Protein with Close Orthologs of Humans

Mutagenesis (molecular biology technique) (2,895 words) [view diff] case mismatch in snippet view article

Species-Specific Predictions of Chemical Susceptibility Derived From the Sequence Alignment to Predict Across Species Susceptibility (SeqAPASS) Tool". Toxicological

Chvátal–Sankoff constants (1,602 words) [view diff] exact match in snippet view article find links to article

(2005), "Exact asymptotic results for the Bernoulli matching model of sequence alignment", Physical Review E, 72 (2): 020901, 4, arXiv:q-bio/0410012, Bibcode:2005PhRvE

C12orf66 (1,330 words) [view diff] case mismatch in snippet view article find links to article

www.ncbi.nlm.nih.gov. Retrieved 2017-05-07. EMBL-EBI. "EMBOSS Needle < Pairwise Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2017-05-07.

KIAA1704 (1,138 words) [view diff] case mismatch in snippet view article find links to article

KIAA1704 Annotated Charge Multiple Sequence Alignment

Side-striped jackal (1,747 words) [view diff] exact match in snippet view article find links to article

side-striped jackal date to the Pliocene era. A mitochondrial DNA sequence alignment for the wolf-like canids gave a phylogenetic tree with the side-striped

C5orf34 (1,166 words) [view diff] exact match in snippet view article find links to article

of plk4 was found to be conserved in the C-terminus in a multiple sequence alignment in both strict and distant orthologs. "NCBI Protein". www.ncbi.nlm

Interferon-inducible GTPase 5 (1,178 words) [view diff] case mismatch in snippet view article find links to article

1007/s00281-010-0224-x. PMID 20737271. S2CID 39006249. "Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2019-05-06. "Genomatix: Retrieve

C20orf202 (798 words) [view diff] case mismatch in snippet view article find links to article

genecards.org. Retrieved 27 April 2020. "Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 3 May 2020. "C20orf202 protein

Classification of the Japonic languages (4,879 words) [view diff] exact match in snippet view article find links to article

September 2015). "Support for linguistic macrofamilies from weighted sequence alignment". PNAS. 112 (41): 12752–12757. doi:10.1073/pnas.1500331112. PMC 4611657

Amyloodinium ocellatum (2,201 words) [view diff] exact match in snippet view article find links to article

of a 248 bp segment of the 3' end of the LSU rDNA gene. Multiple sequence alignment using the CLUSTALw confirmed that sequenced AO was conserved with

FAM71E2 (1,132 words) [view diff] case mismatch in snippet view article find links to article

unafold.rna.albany.edu. Retrieved 2019-05-12. "Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2019-05-12. "Phyre 2 Results

FAM178B (1,317 words) [view diff] case mismatch in snippet view article find links to article

original on 2016-06-02. Retrieved 2019-04-29. "Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2019-04-29. "ExPASy: SIB Bioinformatics

Austronesian peoples (26,276 words) [view diff] exact match in snippet view article find links to article

(October 2015). "Support for linguistic macrofamilies from weighted sequence alignment". Proceedings of the National Academy of Sciences of the United States

TMEM275 (1,167 words) [view diff] case mismatch in snippet view article find links to article

2020-05-05. "TMEM275 orthologs". NCBI. Retrieved 2020-05-01. "EMBOSS Needle < Pairwise Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2020-05-01.

Tim Kraska (1,909 words) [view diff] exact match in snippet view article find links to article

into RocksDB, and has been used in other applications such as DNA sequence alignment and internet packet classification. Kraska has also developed the

Black-backed jackal (4,563 words) [view diff] exact match in snippet view article find links to article

consistent with divergence 2.3–4.5 million years ago. A mitochondrial DNA sequence alignment for the wolf-like canids gave a phylogenetic tree with the side-striped

RUFY2 (1,357 words) [view diff] exact match in snippet view article find links to article

Lopez R, Gibson TJ, Higgins DG, Thompson JD (July 2003). "Multiple sequence alignment with the Clustal series of programs". Nucleic Acids Res. 31 (13):

CRACD-like protein (1,347 words) [view diff] case mismatch in snippet view article find links to article

Life". www.timetree.org. Retrieved 2017-04-23. EMBL-EBI. "EMBOSS Needle < Pairwise Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2017-04-23.

Nymphaea subg. Lotos (772 words) [view diff] exact match in snippet view article find links to article

K., Borsch, T., & Gruenstaeudl, M. (2024). On the importance of sequence alignment inspections in plastid phylogenomics–an example from revisiting the

C4orf19 (841 words) [view diff] case mismatch in snippet view article find links to article

"InterPro". www.ebi.ac.uk. Retrieved 2021-12-17. "Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2021-12-17. "JPred: A Protein

C9orf50 (1,037 words) [view diff] exact match in snippet view article find links to article

100% consensus line created in MView of the strict ortholog multiple sequence alignment. Amino Acids in red represent conserved amino acids in DUF4685. 14

Proline-rich protein 30 (1,381 words) [view diff] exact match in snippet view article find links to article

1994). "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight

J. Richard McIntosh (3,428 words) [view diff] exact match in snippet view article find links to article

proteins when they are discovered. The authors recommend using protein sequence alignment based homology search to help classify the kinesins. It also makes

Lew Allen Award (123 words) [view diff] exact match in snippet view article find links to article

Scanning tunneling microscopy-related technologies Edward T. Chow Sequence alignment coprocessors Biological Information Signal Processor James L. Fanson

SNED1 (2,400 words) [view diff] exact match in snippet view article find links to article

1994). "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight

LRRIQ3 (1,404 words) [view diff] exact match in snippet view article find links to article

PMID 10892809. Cuff JA, Barton GJ (August 2000). "Application of multiple sequence alignment profiles to improve protein secondary structure prediction". Proteins

RIOK1 (1,378 words) [view diff] exact match in snippet view article find links to article

of 18S-E pre-rRNA to the mature 18S rRNA. Looking at the multiple sequence alignment (aligned using Clustal Omega) it is possible to compare the modified

Hammerhead ribozyme (4,582 words) [view diff] exact match in snippet view article find links to article

Peña M, Korobeynikov A, Chikhi R, Babaian A (2022). "Petabase-scale sequence alignment catalyses viral discovery". Nature. 602 (7895): 142–147. Bibcode:2022Natur

C6orf222 (1,401 words) [view diff] exact match in snippet view article find links to article

agonist (BID) was found to be conserved at the C-terminus in a multiple sequence alignment in both strict and distant orthologs. The equal distribution of positively

C4orf51 (1,213 words) [view diff] case mismatch in snippet view article find links to article

for Biotechnology Information): Protein. "Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2019-05-06. "CFSSP: Chou & Fasman

CCDC121 (1,166 words) [view diff] case mismatch in snippet view article find links to article

tissues NCBI Gene Database entry on CCDC121 Clustal Omega: Multiple Sequence Alignment Tool. Alignment of CCDC166 and CCDC121 isoforms 1 and 2. [10] Zhang

QSER1 (2,009 words) [view diff] exact match in snippet view article find links to article

Biology Workbench PELE. An image of the structurally similar region and sequence alignment is shown on the right. Regions before the identified structurally

Chrysis ignita (2,580 words) [view diff] exact match in snippet view article find links to article

41 ingroup and 6 outgroup taxa. By using two simultaneous Bayesian sequence alignment methods, they were able to reconstruct the ignita phylogeny. Their

DMAC1 (1,594 words) [view diff] exact match in snippet view article find links to article

(1994). "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight

Killer-cell immunoglobulin-like receptor (5,415 words) [view diff] case mismatch in snippet view article find links to article

Structures and Gene Families as Provided by a New Motif-Based Multiple Sequence Alignment". Frontiers in Immunology. 11. doi:10.3389/fimmu.2020.585731. PMC 7708349

Cancer Genome Anatomy Project (2,602 words) [view diff] exact match in snippet view article find links to article

accessible CGAP-GAI has a number of tools which can display both a sequence alignment and assembly overview with context to sequences from which they were

C12orf29 (1,311 words) [view diff] case mismatch in snippet view article find links to article

ncbi.nlm.nih.gov. Retrieved 2021-12-16. "Clustal Omega < Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2021-12-16. "IntAct Portal"

LGR5 (2,708 words) [view diff] exact match in snippet view article find links to article

Follicle-stimulating hormone and Thyroid-stimulating hormone contain only 9 repeats. Sequence alignment showed that the second N-glycosylation site in LGR5 (Asn 208) aligns

Lucy Forrest (797 words) [view diff] case mismatch in snippet view article find links to article

Honig, Barry (2006-07-15). "On the Accuracy of Homology Modeling and Sequence Alignment Methods Applied to Membrane Proteins". Biophysical Journal. 91 (2):

List of filename extensions (M–R) (1,503 words) [view diff] exact match in snippet view article

1000 Genome Project Data Processing Subgroup (2009) (2009). "The Sequence alignment/map (SAM) format and SAMtools". Bioinformatics. 25 (16): 2078–2079

C16orf90 (1,345 words) [view diff] case mismatch in snippet view article find links to article

useast.ensembl.org. Retrieved 2020-05-01. "Clustal Omega". Multiple Sequence Alignment. EMBL-EBI. Retrieved February 17, 2020. "Compute pI/Mw Tool". ExPASy

Signal recognition particle RNA (3,769 words) [view diff] exact match in snippet view article find links to article

PMID 6181418. S2CID 4237513. Larsen N, Zwieb C (January 1991). "SRP-RNA sequence alignment and secondary structure". Nucleic Acids Research. 19 (2): 209–215

C11orf42 (1,138 words) [view diff] exact match in snippet view article find links to article

This image shows the multiple sequence alignment of close and distant related orthologs for C11orf42.

NBEAL1 (1,453 words) [view diff] case mismatch in snippet view article find links to article

Using Biology Workbench, a Multiple Sequence Alignment was done to illustrate the highly conserved aspects of NBEAL1 in close orthologs to the homo sapiens

C21orf58 (1,766 words) [view diff] case mismatch in snippet view article find links to article

ncbi.nlm.nih.gov. Retrieved 2018-05-04. EMBL-EBI. "Bioinformatics Tools for Multiple Sequence Alignment < EMBL-EBI". ebi.ac.uk. Retrieved 2018-05-04.

Protein FAM46B (1,645 words) [view diff] case mismatch in snippet view article find links to article

Multiple Sequence Alignment of FAM46 Paralogs

Carbohydrate sulfotransferase (2,102 words) [view diff] exact match in snippet view article find links to article

conserved lysine in the active ATP binding site of kinases. Protein sequence alignment studies indicate that this lysine is conserved in cytosolic sulfotransferases

Nymphaea heudelotii (624 words) [view diff] exact match in snippet view article find links to article

K., Borsch, T., & Gruenstaeudl, M. (2024). On the importance of sequence alignment inspections in plastid phylogenomics–an example from revisiting the

FAM63A (1,257 words) [view diff] exact match in snippet view article find links to article

Multiple sequence alignment of DUF demonstrating conservation across orthologs. Dark blue indicates complete conservation, pink identical residues, and

FAM203B (1,538 words) [view diff] exact match in snippet view article find links to article

Fuchs R (April 1992). "CLUSTAL V: improved software for multiple sequence alignment". Computer Applications in the Biosciences. 8 (2): 189–91. doi:10

C1orf21 (1,235 words) [view diff] case mismatch in snippet view article find links to article

from the original on 2018-05-06. Retrieved 2019-08-04. "Multiple Sequence Alignment - CLUSTALW". www.genome.jp. Retrieved 2019-08-08. "TimeTree :: The

Nymphaea petersiana (685 words) [view diff] exact match in snippet view article find links to article

K., Borsch, T., & Gruenstaeudl, M. (2024). On the importance of sequence alignment inspections in plastid phylogenomics–an example from revisiting the

Viterbi semiring (4,048 words) [view diff] exact match in snippet view article find links to article

approach. Many problems in bioinformatics involve finding an optimal sequence alignment or annotation, often using HMM variants. For example, profile HMMs

Zinc finger protein 226 (3,886 words) [view diff] exact match in snippet view article find links to article

Figure 4. A multiple sequence alignment of human ZNF226 and ortholog species with selected regions highlighted.

CUL4A (4,418 words) [view diff] exact match in snippet view article find links to article

degron lies within the homeodomain, which is crucial for DNA binding. Sequence alignment studies showed that there is a highly conserved "LEXE" motif within

C12orf50 (1,069 words) [view diff] exact match in snippet view article find links to article

Multiple sequence alignment of human protein C12orf50 and its paralogs: ZC3H11A and ZC3H11B

EVA1C (943 words) [view diff] case mismatch in snippet view article find links to article

orthologs". NCBI. Retrieved 2022-12-16. "EMBOSS Needle < Pairwise Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2022-12-16. "TimeTree :: The

Fam158a (1,734 words) [view diff] exact match in snippet view article find links to article

1994). "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight

USP27X (2,080 words) [view diff] exact match in snippet view article find links to article

structure. These structures have been identified through multiple sequence alignment of the USP catalytic cores. Box 1 is known to contain the catalytic

SMIM23 (1,806 words) [view diff] case mismatch in snippet view article find links to article

"The European Bioinformatics Institute - EMBOSS Needle - Pairwise Sequence Alignment". Archived from the original on 2011-04-19. EMBL-EBI, InterPro. "Protein

Janus kinase 3 inhibitor (2,126 words) [view diff] exact match in snippet view article find links to article

1H-pyrrolo[2,3-b]pyridine, as it mimics the pyrrolopyrimidine scaffold. Sequence alignment has shown that the ATP binding pockets of the JAKs are almost identical

Glossary of cellular and molecular biology (0–L) (32,077 words) [view diff] exact match in snippet view article

either nucleotides or amino acids) found at each position in a common sequence alignment and obtained by comparing multiple closely related sequence alignments

C19orf38 (1,205 words) [view diff] case mismatch in snippet view article find links to article

ncbi.nlm.nih.gov. Retrieved 2023-12-17. "EMBOSS Needle < Pairwise Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2023-12-17. Cooper, Max D.;

FAM13B (842 words) [view diff] exact match in snippet view article find links to article

Multiple sequence alignment of a conserved area of the FAM13B protein

C19orf67 (1,883 words) [view diff] case mismatch in snippet view article find links to article

pax-db.org. Retrieved 2017-04-30. EMBL-EBI. "EMBOSS Needle < Pairwise Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2017-03-02. "TimeTree :: The

Translationally controlled tumor protein (3,593 words) [view diff] exact match in snippet view article find links to article

was described as a pro-survival protein antagonizing BAX function. Sequence alignment of TCTP sequences from more than 30 different species reveals a high

C2orf80 (1,218 words) [view diff] case mismatch in snippet view article find links to article

1016/j.ejmg.2013.09.003. PMID 24055526. "EMBOSS Needle < Pairwise Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2021-12-18. "BLAST: Basic Local

Zinc finger protein 800 (1,614 words) [view diff] case mismatch in snippet view article find links to article

from the original on 2018-04-06. Retrieved 2018-05-06. "Multiple Sequence Alignment". Clustal Omega. "Basic Local Alignment Search Tool". NCBI. "NCBI

Virome analysis (3,462 words) [view diff] exact match in snippet view article find links to article

“unknown”, providing little information to the user. Similarly, other sequence alignment-based methods, such as Kraken and Metavir, also face limitations due

C6orf118 (2,746 words) [view diff] case mismatch in snippet view article find links to article

www.ncbi.nlm.nih.gov. Retrieved 2024-09-15. "EMBOSS Needle Pairwise Sequence Alignment (PSA)". www.ebi.ac.uk. Retrieved 2024-10-12. Lengerke C, Wingert R

TMEM247 (1,467 words) [view diff] exact match in snippet view article find links to article

CLUSTAL O(1.2.4) multiple sequence alignment of TMEM247 and its paralog, hCG17037

VPS35 (4,013 words) [view diff] exact match in snippet view article find links to article

aspartic acid to asparagine at amino acid residue 620 (D620N) in VPS35. Sequence alignment of VPS35 orthologs between Homo sapiens, Pan troglodytes, Mus musculus

FAM208b (2,221 words) [view diff] case mismatch in snippet view article find links to article

Multiple Sequence Alignment between various mammalian groups of the Nuclear Localization Signal of FAM208b, indicating that the protein is likely transported

Euryale (plant) (1,510 words) [view diff] exact match in snippet view article

K., Borsch, T., & Gruenstaeudl, M. (2024). On the importance of sequence alignment inspections in plastid phylogenomics–an example from revisiting the

Proser2 (1,894 words) [view diff] case mismatch in snippet view article find links to article

Diego Supercomputer Center) Biology Workbench. ClustalW Multiple Sequence Alignment [http://workbench.sdsc.edu/] Isoelectric Point Determination. Biology

Fam89A (2,102 words) [view diff] exact match in snippet view article find links to article

Pairwise sequence alignment of FAM89A to its paralog, FAM89A, reveals an unidentified conserved region containing experimentally verified FAM89B phosphorylation