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Find link is a tool written by Edward Betts.searching for Scaffolding (bioinformatics) 43 found (48 total)
alternate case: scaffolding (bioinformatics)
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Sanger sequence data if appropriately formatted to aid in assembly and scaffolding. Sequencing Sequence assembly Genivaldo, GZ; Silva, Bas E; Dutilh, David;BioRuby (506 words) [view diff] no match in snippet view article find links to article
of setting up directory/file scaffolding, a git repository and releasing online package databases. Open Bioinformatics Foundation BioPerl BioPython BioJavaHybrid genome assembly (2,940 words) [view diff] no match in snippet view article find links to article
In bioinformatics, hybrid genome assembly refers to utilizing various sequencing technologies to achieve the task of assembling a genome from fragmentedPhi X 174 (2,453 words) [view diff] no match in snippet view article find links to article
incorporation, can be overcome when excess amounts of protein B, the internal scaffolding protein, are supplied.[citation needed] The DNA is ejected through aAlan Christoffels (2,658 words) [view diff] no match in snippet view article find links to article
bioinformatics scientist, academic, and an author. He is Professor of Bioinformatics, and the director of the South African National Bioinformatics InstituteProtein–protein interaction (8,383 words) [view diff] no match in snippet view article find links to article
requires denaturation of the complex. Several enzymes, carrier proteins, scaffolding proteins, and transcriptional regulatory factors carry out their functionsHuman genome (10,102 words) [view diff] no match in snippet view article find links to article
gene-regulatory elements, DNA playing structural and replicatory roles, such as scaffolding regions, telomeres, centromeres, and origins of replication, plus largeDuplodnaviria (4,265 words) [view diff] no match in snippet view article find links to article
the capsid by the capsid maturation protease, which may be part of the scaffolding. Scaffold proteins may be removed intact or after the protease breaksLaminin (3,372 words) [view diff] no match in snippet view article find links to article
cells to the basement membrane. Laminins are integral to the structural scaffolding of almost every tissue of an organism—secreted and incorporated intoProtein (10,957 words) [view diff] no match in snippet view article find links to article
functions, such as actin and myosin in muscle, and the cytoskeleton's scaffolding proteins that maintain cell shape. Other proteins are important in cellGenome sequencing of endangered species (2,269 words) [view diff] no match in snippet view article find links to article
Walter (2011-02-15). "Scaffolding pre-assembled contigs using SSPACE". Bioinformatics. 27 (4): 578–579. doi:10.1093/bioinformatics/btq683. ISSN 1367-4811CASS4 (3,332 words) [view diff] no match in snippet view article find links to article
Cas scaffolding protein family member 4 is a protein that in humans is encoded by the CASS4 gene. CASS4 (Crk associated substrate 4) is the fourth andProtein tertiary structure (1,603 words) [view diff] no match in snippet view article find links to article
J (2006). "Molecular gymnastics: serpiginous structure, folding and scaffolding". Current Opinion in Structural Biology. 16 (6): 761–68. doi:10.1016/jList of RNA-Seq bioinformatics tools (20,394 words) [view diff] no match in snippet view article find links to article
next-generation sequencing technologies. This technique is largely dependent on bioinformatics tools developed to support the different steps of the process. HereCoiled coil (3,933 words) [view diff] no match in snippet view article find links to article
from regular bundles to peculiar twists". Bioinformatics. 36 (22–23): 5368–5376. doi:10.1093/bioinformatics/btaa1041. ISSN 1367-4803. PMC 8016460. PMID 33325494Complete Genomics (1,158 words) [view diff] no match in snippet view article find links to article
combinatorial process of DNA barcoding. It enables phasing, SV detection, scaffolding, and cost-effective diploid de novo genome assembly from second-generationMetabolism (12,647 words) [view diff] no match in snippet view article find links to article
mechanical functions, such as those that form the cytoskeleton, a system of scaffolding that maintains the cell shape. Proteins are also important in cell signalingJumping library (2,925 words) [view diff] no match in snippet view article find links to article
library can be used with NGS for the mapping of structural variation and scaffolding of de novo assemblies. Jumping libraries can be categorized accordingTMEM69 (685 words) [view diff] no match in snippet view article find links to article
the scientific community. It is, however, thought to play a role as a scaffolding protein in a G-coupled protein receptor complex in Xenopus tropicalisFriendly artificial intelligence (2,709 words) [view diff] no match in snippet view article find links to article
present-day, unextrapolated humanity. Steve Omohundro has proposed a "scaffolding" approach to AI safety, in which one provably safe AI generation helpsProtein design (7,746 words) [view diff] no match in snippet view article find links to article
problems using linear and integer programming". Bioinformatics. 21 (7): 1028–36. doi:10.1093/bioinformatics/bti144. PMID 15546935. Yanover, Chen; Talya Meltzer;MAP3K1 (3,171 words) [view diff] no match in snippet view article find links to article
PMID 17529967. "Q13233 (M3K1_HUMAN)". Swiss Model. Swiss Institute of Bioinformatics. Yan M, Dai T, Deak JC, Kyriakis JM, Zon LI, Woodgett JR, TempletonG protein-coupled receptor (9,408 words) [view diff] no match in snippet view article find links to article
increase the affinity of the intracellular surface for the binding of scaffolding proteins called β-arrestins (β-arr). Once bound, β-arrestins both stericallyOptical mapping (2,102 words) [view diff] no match in snippet view article find links to article
Nagarajan, N., et al. "Scaffolding and validation of bacterial genome assemblies using optical restriction maps." Bioinformatics 24.10 (2008):1229–35.Wnt signaling pathway (7,432 words) [view diff] no match in snippet view article find links to article
gateway molecule pages--a data model perspective". Bioinformatics. 27 (12): 1736–8. doi:10.1093/bioinformatics/btr190. PMC 3106186. PMID 21505029. Wnt+ProteinsArithmetic (16,396 words) [view diff] no match in snippet view article find links to article
"Techniques for Designing Bioinformatics Algorithms". Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics. Elsevier. ISBN 978-0-12-811432-2Ancient protein (7,980 words) [view diff] no match in snippet view article find links to article
collagen fibres, forming a matrix. Despite extensive research, bone scaffolding is still a challenge, and the role of non-collagenous proteins (a wideHOXA11-AS1 (2,050 words) [view diff] no match in snippet view article find links to article
"LncRNA HOXA11-AS Promotes Proliferation and Invasion of Gastric Cancer by Scaffolding the Chromatin Modification Factors PRC2, LSD1, and DNMT1". Cancer ResearchRecursive self-improvement (1,367 words) [view diff] no match in snippet view article find links to article
"STOP" (Self-optimization Through Program Optimization), in which a "scaffolding" program recursively improves itself using a fixed LLM. In May 2025,Hepatocyte growth factor receptor (6,731 words) [view diff] no match in snippet view article find links to article
subunit of phosphatidylinositol-3 kinase (PI3K), or indirectly through the scaffolding protein Gab1 Tyr 1349 and Tyr 1356 of the multisubstrate docking siteGian Gaetano Tartaglia (1,776 words) [view diff] no match in snippet view article find links to article
Predicting the in Vivo Structure of RNA Molecules". Bioinformatics. 36 (3): 940–941. doi:10.1093/bioinformatics/btz666. PMC 9883674. PMID 31504168. Zacco, Elsa;CRISPR (11,901 words) [view diff] no match in snippet view article find links to article
bridges two Cas1 dimers. In this complex, Cas2 performs a non-enzymatic scaffolding role, binding double-stranded fragments of invading DNA, while Cas1 bindsJay Clark Brown (2,407 words) [view diff] no match in snippet view article find links to article
capsid proteins, including VP5 as the major capsid protein, VP22a as a scaffolding protein and VP19c and VP23 as triplex proteins. In related research,Structural equation modeling (10,356 words) [view diff] no match in snippet view article find links to article
and coefficient estimation, and hence deserve acknowledgment as the scaffolding supporting the estimates and their interpretation. Interpretations becomeList of sequenced plant genomes (10,407 words) [view diff] no match in snippet view article find links to article
php/Sequenced_plant_genomes https://phytozome.jgi.doe.gov/pz/portal.html https://bioinformatics.psb.ugent.be/plaza/ Yu J, Li L, Wang S, Dong S, Chen Z, Patel N, et alChild development (23,128 words) [view diff] no match in snippet view article find links to article
development) could help children learn new tasks. This technique, called "scaffolding," builds new knowledge onto the knowledge children already have to helpRibosomally synthesized and post-translationally modified peptides (6,238 words) [view diff] no match in snippet view article find links to article
in leader peptide recognition and binding and is sometimes called a scaffolding protein. The D protein is an ATP-dependent cyclodehydratase that catalyzesHeritability of autism (11,119 words) [view diff] no match in snippet view article find links to article
et al. (January 2007). "Mutations in the gene encoding the synaptic scaffolding protein SHANK3 are associated with autism spectrum disorders". NatureApplications of artificial intelligence (21,082 words) [view diff] no match in snippet view article find links to article
Frank; Correia, Bruno; Ovchinnikov, Sergey; Baker, David (22 July 2022). "Scaffolding protein functional sites using deep learning". Science. 377 (6604): 387–394Alternative abiogenesis scenarios (8,940 words) [view diff] no match in snippet view article find links to article
droplets was shown to be preserved within the droplets. The droplets have scaffolding ability, by allowing lipids to assemble around them; this may have preventedTimeline of biotechnology (24,501 words) [view diff] no match in snippet view article find links to article
Frank; Correia, Bruno; Ovchinnikov, Sergey; Baker, David (22 July 2022). "Scaffolding protein functional sites using deep learning" (PDF). Science. 377 (6604):CSNK1D (14,740 words) [view diff] no match in snippet view article find links to article
its cellular function. This sequestration is usually facilitated by scaffolding proteins, which are also supposed to allosterically control the activityList of sequenced animal genomes (31,376 words) [view diff] no match in snippet view article find links to article
Williams B, Schaeffer L, Antoshechkin I, Wold BJ, et al. (December 2010). "Scaffolding a Caenorhabditis nematode genome with RNA-seq". Genome Research. 20 (12):