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Longer titles found: Amplicon sequence variant (view)

searching for Amplicon 122 found (174 total)

alternate case: amplicon

Viral metagenomics (2,872 words) [view diff] exact match in snippet view article find links to article

untargeted metagenomics and metatranscriptomics does not need a genetic marker, amplicon sequencing does. It uses a gene that is highly conserved as a genetic marker

SNP genotyping (5,005 words) [view diff] exact match in snippet view article find links to article

denaturation of the entire dsDNA amplicon. You make primers specific to the site you want to amplify. You "paint" the amplicon with a double-strand specific

Runhild Gammelsæter (347 words) [view diff] exact match in snippet view article find links to article

portraits by Runhild herself. On June 28, 2008, her debut solo album, Amplicon, was released through Utech Records. On December 13, 2014, she released

Binary Alignment Map (354 words) [view diff] exact match in snippet view article find links to article

quality (SM) Paired-end alignment quality (AS) Edit distance tag (NM) Amplicon name tag (XN) Bam format uses 0-based coordinate system, where as SAM uses

PICRUSt (1,506 words) [view diff] exact match in snippet view article find links to article

present in organisms whose sequences are found in a 16S ribosomal RNA amplicon library. The below description corresponds to the original version of PICRUSt

Polony sequencing (1,771 words) [view diff] exact match in snippet view article find links to article

common sequences. The current read length of this technique is 26 bases per amplicon and 13 bases per tag, leaving a gap of 4–5 bases in each tag. The protocol

LRRN2 (480 words) [view diff] exact match in snippet view article find links to article

transduction receptors and is a candidate for the target gene in the 1q32.1 amplicon in malignant gliomas. Two alternatively spliced transcript variants encoding

Melting curve analysis (1,448 words) [view diff] exact match in snippet view article find links to article

provide very specific melting curves from the single-stranded (ss) probe-to-amplicon hybrid. Idaho Technology and Roche have done much to popularize this use

Plutella australiana (261 words) [view diff] exact match in snippet view article find links to article

evidence supports the separation of the two species, sequencing of a ~500 bp amplicon of the mitochondrial Cytochrome Oxidase I gene showed 8.6% sequence divergence

Circulating tumor DNA (5,856 words) [view diff] exact match in snippet view article find links to article

sensitivity of CAPP-Seq is reported to be 2.5 molecules in 1,000,000. Tagged amplicon deep sequencing (TAM-Seq) allows targeted sequencing of entire genes to

ZNF703 (1,110 words) [view diff] exact match in snippet view article find links to article

oncogene discovery in the past six years. ZNF703 is a part of 8p12 telomeric amplicon that is associated with Luminal B breast cancer. Recently, ZNF703 is identified

List of open-source bioinformatics software (91 words) [view diff] exact match in snippet view article find links to article

Sandia National Laboratories. mothur Software for analysis of 16S rRNA gene amplicon sequence data Linux, macOS, Windows GPL University of Michigan PathVisio

Microbiome-wide association study (1,005 words) [view diff] exact match in snippet view article find links to article

level (species, genus, phyla, etc.), operational taxonomic unit (OTU) or amplicon sequence variant (ASV), transcriptome, proteome, and more. The approach

Amplified Ribosomal DNA Restriction Analysis (608 words) [view diff] exact match in snippet view article find links to article

enzymes to yield similar patterns for not so unrelated organisms. The amplicon to be analysed must preferably correspond to a size of greater than 1000

Mantamonas (612 words) [view diff] exact match in snippet view article find links to article

(2017-10-08). "Enigmatic Diphyllatea eukaryotes: Culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution"

Syndinium (975 words) [view diff] exact match in snippet view article find links to article

Pagenkopp, L. KM., Fleischer, RC., Carney, KJ., Holzer, KK., Ruiz, Gm. 2016: Amplicon-Based Pyrosequencing Reveals High Diversity of Protistan Parasites in Ships'

Bacterial artificial chromosome (925 words) [view diff] exact match in snippet view article find links to article

Science Creative Quarterly Empire Genomics (company that sells BAC clones from genomic libraries) Amplicon Express (company that makes custom BAC libraries)

Quantitative PCR instrument (1,008 words) [view diff] exact match in snippet view article find links to article

Wittwer, C.; Voelkerding, K. (2007). "Expanded instrument comparison of amplicon DNA melting analysis for mutation scanning and genotyping". Clinical Chemistry

Microsatellite (7,384 words) [view diff] exact match in snippet view article find links to article

Microsatellites can be analysed and verified by established PCR amplification and amplicon size determination, sometimes followed by Sanger DNA sequencing. In forensics

DNA sequencer (3,850 words) [view diff] exact match in snippet view article find links to article

and complex genomes of any size. Finally, the GS Amplicon Variant Analyzer aligns reads from amplicon samples against a reference, identifying variants

ZNF217 (967 words) [view diff] exact match in snippet view article find links to article

SG, van Diest PJ, Albertson DG, Meijer GA (Jul 2003). "Determination of amplicon boundaries at 20q13.2 in tissue samples of human gastric adenocarcinomas

Gammaherpesvirinae (1,250 words) [view diff] exact match in snippet view article find links to article

Oehmig, A.; Fraefel, C.; Breakefield, X. (2004). "Update on herpesvirus amplicon vectors". Mol Ther. 10 (4): 630–643. doi:10.1016/j.ymthe.2004.06.641. PMID 15451447

DNA barcoding (11,075 words) [view diff] exact match in snippet view article find links to article

sources. However, some studies argue that there is no relationship between amplicon size and detection rate of eDNA. When the DNA barcode marker region has

Gasdermin A (111 words) [view diff] exact match in snippet view article find links to article

to the oncogenomic recombination hotspot around the PPP1R1B-ERBB2-GRB7 amplicon". Int. J. Oncol. 24 (4): 757–63. doi:10.3892/ijo.24.4.757. PMID 15010812

MG-RAST (980 words) [view diff] exact match in snippet view article find links to article

control, annotation, comparative analysis, and archiving for metagenomic and amplicon sequences. It utilizes a combination of various bioinformatics tools to

Loop-mediated isothermal amplification (2,814 words) [view diff] exact match in snippet view article find links to article

method combined with amplicon detection by AuNP can have advantages over other methods in terms of reduced assay time, amplicon confirmation by hybridization

Haplogroup R2 (462 words) [view diff] exact match in snippet view article find links to article

Common Name Marker M479 YCC Haplogroup R-M479 Nucleotide change C to T Amplicon size (bp) reference sequence 323 Polymorphism position from 5' end 107

Haplogroup R2 (462 words) [view diff] exact match in snippet view article find links to article

Common Name Marker M479 YCC Haplogroup R-M479 Nucleotide change C to T Amplicon size (bp) reference sequence 323 Polymorphism position from 5' end 107

PAX9 (1,473 words) [view diff] exact match in snippet view article find links to article

PCR amplification due to sequence identity between a PCR primer and an amplicon: is direct sequencing so reliable?". Human Genetics. 110 (6): 606–8. doi:10

Syntrophococcus sucromutans (1,305 words) [view diff] exact match in snippet view article find links to article

of ruminants. The foregut community samples were then sequenced via 454-amplicon pyrosequencing. After sequencing, the 16S rRNA gene and its V3/V4 region

Star related lipid transfer domain containing 3 (1,691 words) [view diff] exact match in snippet view article find links to article

to the oncogenomic recombination hotspot around the PPP1R1B-ERBB2-GRB7 amplicon". International Journal of Oncology. 24 (4): 757–63. doi:10.3892/ijo.24

Proximity extension assay (927 words) [view diff] exact match in snippet view article find links to article

created pool of extension products of DNA sequence forms amplicons amplified by PCR where each amplicon sequence corresponds to a target proteins identity and

GSDMB (172 words) [view diff] exact match in snippet view article find links to article

to the oncogenomic recombination hotspot around the PPP1R1B-ERBB2-GRB7 amplicon". Int. J. Oncol. 24 (4): 757–63. doi:10.3892/ijo.24.4.757. PMID 15010812

CCNL1 (571 words) [view diff] exact match in snippet view article find links to article

PMID 11683997. S2CID 14486999. Redon R, Hussenet T, Bour G, et al. (2002). "Amplicon mapping and transcriptional analysis pinpoint cyclin L as a candidate oncogene

Beta thymosins (1,779 words) [view diff] exact match in snippet view article find links to article

Cite journal requires |journal= (help) "NUE00005552 Capsaspora owczarzaki Amplicon express Capsaspora owczarza - EST - NCBI". 2008-11-20. {{cite journal}}:

Natalie Prystajecky (1,102 words) [view diff] exact match in snippet view article find links to article

S. L.; Isaac-Renton, Judith (2016-07-11). "A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes

PFDN4 (526 words) [view diff] exact match in snippet view article find links to article

(Jun 2001). "Comprehensive genome sequence analysis of a breast cancer amplicon". Genome Research. 11 (6): 1034–42. doi:10.1101/gr.gr1743r. PMC 311107

PARP12 (410 words) [view diff] exact match in snippet view article find links to article

"Identification and characterization of human TIPARP gene within the CCNL amplicon at human chromosome 3q25.31". Int J Oncol. 23 (2): 541–7. doi:10.3892/ijo

ERLIN2 (393 words) [view diff] exact match in snippet view article find links to article

Ellis I, Brenton JD, Edwards PA, Caldas C (Aug 2005). "A 1 Mb minimal amplicon at 8p11-12 in breast cancer identifies new candidate oncogenes". Oncogene

LSM1 (802 words) [view diff] exact match in snippet view article find links to article

function of the LSM1 oncogene in human breast cancers with the 8p11−12 amplicon". Oncogene. 26 (14): 2104–14. doi:10.1038/sj.onc.1210002. PMC 2435249.

TIPARP (449 words) [view diff] exact match in snippet view article find links to article

"Identification and characterization of human TIPARP gene within the CCNL amplicon at human chromosome 3q25.31". Int J Oncol. 23 (2): 541–7. doi:10.3892/ijo

Varicella zoster virus (3,062 words) [view diff] exact match in snippet view article find links to article

two minor genotypes of varicella-zoster virus strains: a practical two-amplicon approach used to genotype clinical isolates in Australia and New Zealand"

Mangrove (10,746 words) [view diff] exact match in snippet view article find links to article

differentiation of root-associated microbial communities, Nevertheless, amplicon-based community profiling may not provide the functional characteristics

Anaerococcus lactolyticus (206 words) [view diff] exact match in snippet view article find links to article

Foot Ulcer Biofilm Infections Determined Using Bacterial Tag Encoded FLX Amplicon Pyrosequencing (bTEFAP)". PLOS ONE. 3 (10): e3326. Bibcode:2008PLoSO..

Peptide nucleic acid (1,832 words) [view diff] exact match in snippet view article find links to article

CD, Dangl JL (October 2013). "Practical innovations for high-throughput amplicon sequencing". Nature Methods. 10 (10): 999–1002. doi:10.1038/nmeth.2634

Apusozoa (1,036 words) [view diff] exact match in snippet view article find links to article

(2017-10-08). "Enigmatic Diphyllatea eukaryotes: Culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution"

Maneesha S. Inamdar (1,387 words) [view diff] exact match in snippet view article find links to article

diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage". Nature Biotechnology. 29 (12): 1132–1144

TCIM (582 words) [view diff] exact match in snippet view article find links to article

Ethier SP (December 2006). "Multiple interacting oncogenes on the 8p11-p12 amplicon in human breast cancer". Cancer Research. 66 (24): 11632–43. doi:10.1158/0008-5472

GATA4 (2,325 words) [view diff] exact match in snippet view article find links to article

S, Glover TW, et al. (2000). "A minimal critical region of the 8p22-23 amplicon in esophageal adenocarcinomas defined using sequence tagged site-amplification

PDZK1 (1,206 words) [view diff] exact match in snippet view article find links to article

Taniwaki M, Inazawa J (2004). "Overexpression of PDZK1 within the 1q12-q22 Amplicon Is Likely To Be Associated with Drug-Resistance Phenotype in Multiple Myeloma"

TACC2 (785 words) [view diff] exact match in snippet view article find links to article

transforming coiled coil containing gene, from the 8p11 breast cancer amplicon". Oncogene. 18 (27): 4032–8. doi:10.1038/sj.onc.1202801. PMID 10435627

BAG4 (815 words) [view diff] exact match in snippet view article find links to article

Ray ME, et al. (2007). "Multiple interacting oncogenes on the 8p11-p12 amplicon in human breast cancer". Cancer Res. 66 (24): 11632–43. doi:10.1158/0008-5472

FGF19 (2,570 words) [view diff] exact match in snippet view article find links to article

Membrane Proteins as Potential Therapeutic Targets Located in the 11q13 Amplicon in Cancers". Journal of Proteome Research. 14 (9): 3670–9. doi:10.1021/acs

APPBP2 (574 words) [view diff] exact match in snippet view article find links to article

"Comprehensive copy number and gene expression profiling of the 17q23 amplicon in human breast cancer". Proc. Natl. Acad. Sci. U.S.A. 98 (10): 5711–6

Xanthoferrin (721 words) [view diff] exact match in snippet view article find links to article

"Dissecting Disease-Suppressive Rhizosphere Microbiomes by Functional Amplicon Sequencing and 10× Metagenomics". mSystems. 6 (3): e0111620. doi:10.1128/mSystems

Microbial ecology (3,602 words) [view diff] exact match in snippet view article find links to article

amplification of small subunit rRNA gene sequences, (c) sequencing the amplicons, and (d) comparison of those sequences to a database of sequences from

TRIM37 (1,318 words) [view diff] exact match in snippet view article find links to article

Rowley, Matthew; Naderi, Ali; Couch, Fergus J. (2003-04-01). "The 17q23 Amplicon and Breast Cancer". Breast Cancer Research and Treatment. 78 (3): 313–322

KDM4C (710 words) [view diff] exact match in snippet view article find links to article

Inazawa J (Sep 2000). "Identification of a novel gene, GASC1, within an amplicon at 9p23-24 frequently detected in esophageal cancer cell lines". Cancer

Burkholderia gladioli (1,740 words) [view diff] exact match in snippet view article find links to article

GLA-r 5'-(AGACTCGAGTCAACTGA)-3' Using these primers for PCR results in an amplicon of approximately 300bp. All members of the genus Burkholderia have multireplicon

Protein asunder homolog (312 words) [view diff] exact match in snippet view article find links to article

Chaganti RS (Nov 2002). "Genomic and expression analysis of the 12p11-p12 amplicon using EST arrays identifies two novel amplified and overexpressed genes"

TACC1 (1,089 words) [view diff] exact match in snippet view article find links to article

transforming coiled coil containing gene, from the 8p11 breast cancer amplicon". Oncogene. 18 (27): 4032–8. doi:10.1038/sj.onc.1202801. PMID 10435627

Illumina dye sequencing (1,984 words) [view diff] exact match in snippet view article find links to article

YJ, Liu QF, Chen MY, Liang D, Zhang P (January 2016). "Parallel tagged amplicon sequencing of relatively long PCR products using the Illumina HiSeq platform

Pacific tree frog (2,130 words) [view diff] exact match in snippet view article find links to article

North American chorus frogs (Hylidae: Pseudacris) with parallel tagged amplicon sequencing. Molecular Phylogenetics and Evolution 75: 78–90. "Observations"

ZC3HAV1 (647 words) [view diff] exact match in snippet view article find links to article

"Identification and characterization of human TIPARP gene within the CCNL amplicon at human chromosome 3q25.31". Int J Oncol. 23 (2): 541–7. doi:10.3892/ijo

MGI (company) (1,903 words) [view diff] exact match in snippet view article

Guangzhou, China): The two sets of sequencing libraries were enriched using amplicon-based and hybrid capture-based approaches, as stated in a research article

COLD-PCR (1,607 words) [view diff] exact match in snippet view article find links to article

to conventional PCR Optimal Tc must be measured and determined for each amplicon, adding an extra step to conventional PCR-based procedures Requirement

THRSP (834 words) [view diff] exact match in snippet view article find links to article

(1998). "The "Spot 14" gene resides on the telomeric end of the 11q13 amplicon and is expressed in lipogenic breast cancers: implications for control

Fibrolytic bacterium (1,324 words) [view diff] exact match in snippet view article find links to article

is used to amplify the genes of the small ribosomal subunit. Then each amplicon is sequenced with the pyrosequencing technique. Once we have the sequences

Jyoti Prakash Tamang (2,171 words) [view diff] exact match in snippet view article find links to article

products of Arunachal Pradesh and Sikkim of India analysed by high-throughput amplicon sequencing. Scientific Reports 8: 1532 doi:10.1038/s41598-018-19524-6.

LSM4 (726 words) [view diff] exact match in snippet view article find links to article

Ray ME, et al. (2007). "Multiple interacting oncogenes on the 8p11-p12 amplicon in human breast cancer". Cancer Res. 66 (24): 11632–43. doi:10.1158/0008-5472

Molecular phenotyping (463 words) [view diff] exact match in snippet view article find links to article

Schindler, T; Küng, E; Ebeling, M; Certa, U (5 July 2014). "Highly sensitive amplicon-based transcript quantification by semiconductor sequencing". BMC Genomics

KIT (gene) (4,118 words) [view diff] exact match in snippet view article

amplified in this tumor type, most commonly occurring as a single gene amplicon. Mutations of KIT have also been implicated in leukemia, a cancer of hematopoietic

Sea turtle migration (3,408 words) [view diff] exact match in snippet view article find links to article

the endangered loggerhead sea turtle (Caretta caretta) revealed by 454 amplicon sequencing". BMC Evolutionary Biology. 13 (1): 95. Bibcode:2013BMCEE..13

GOLT1B (749 words) [view diff] exact match in snippet view article find links to article

Chaganti RS (Nov 2002). "Genomic and expression analysis of the 12p11-p12 amplicon using EST arrays identifies two novel amplified and overexpressed genes"

Varisulca (855 words) [view diff] exact match in snippet view article find links to article

(2017-10-08). "Enigmatic Diphyllatea eukaryotes: Culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution"

Demethylase (3,087 words) [view diff] exact match in snippet view article find links to article

Inazawa J (Sep 2000). "Identification of a novel gene, GASC1, within an amplicon at 9p23-24 frequently detected in esophageal cancer cell lines". Cancer

Oxford Nanopore Technologies (2,186 words) [view diff] exact match in snippet view article find links to article

dead link] "Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequence".[permanent dead link] "Nanopore

Rhizosphere (5,208 words) [view diff] exact match in snippet view article find links to article

determination. High-throughput screening High-Throughput Sequencing: 16S rRNA Amplicon, Metagenomics, Metatranscriptomics Culture Depend Approaches Root Imaging

DNA footprinting (2,156 words) [view diff] exact match in snippet view article find links to article

region of interest that contains a potential protein-binding site, ideally amplicon is between 50 and 200 base pairs in length. Add protein of interest to

Telethonin (3,491 words) [view diff] exact match in snippet view article find links to article

to the oncogenomic recombination hotspot around the PPP1R1B-ERBB2-GRB7 amplicon". International Journal of Oncology. 24 (4): 757–63. doi:10.3892/ijo.24

Akkermansia glycaniphila (755 words) [view diff] exact match in snippet view article find links to article

mucin layer. This was demonstrated for A. muciniphila MucT. 16s rRNA gene amplicon sequencing reveals that the genus Akkermansia have been detected in animals

Mayaro virus disease (2,145 words) [view diff] exact match in snippet view article find links to article

place. The MAYV sequences analysis showed two genotypes (D and L). The amplicon used for phylogenetic analysis includes E1 and E2 glycoprotein genes and

Recombinase polymerase amplification (1,704 words) [view diff] exact match in snippet view article find links to article

PCR amplification times to less than 30 minutes, particularly for short amplicons using dual-temperature cycling rather than the conventional three-temperature

His-tag (2,639 words) [view diff] exact match in snippet view article find links to article

"Tagging the expressed protein with 6 histidines: rapid cloning of an amplicon with three options". PLOS ONE. 8 (5): e63922. Bibcode:2013PLoSO...863922S

SciGenom Labs (518 words) [view diff] exact match in snippet view article find links to article

"Cost-efficient HIV-1 drug resistance surveillance using multiplexed high throughput amplicon sequencing: Implications for use in low and middle income countries". Inst

PSMA7 (3,229 words) [view diff] exact match in snippet view article find links to article

C (February 2008). "The proteasome subunit PSMA7 located on the 20q13 amplicon is overexpressed and associated with liver metastasis in colorectal cancer"

Microfluidic whole genome haplotyping (1,400 words) [view diff] exact match in snippet view article find links to article

available platforms to produce sufficient amounts of unbiased and error free amplicon. Chromosome microdissection is another process for isolating single chromosomes

RNA-binding protein (4,589 words) [view diff] exact match in snippet view article find links to article

(March 2015). "The RNA binding protein FXR1 is a new driver in the 3q26-29 amplicon and predicts poor prognosis in human cancers". Proceedings of the National

YAP1 (3,433 words) [view diff] exact match in snippet view article find links to article

"Transforming properties of YAP, a candidate oncogene on the chromosome 11q22 amplicon". Proceedings of the National Academy of Sciences of the United States

Epigenomics (5,663 words) [view diff] exact match in snippet view article find links to article

of multiplying and long read lengths (1.5 kb) without the need for PCR amplicon sub-cloning. First mathematical models for different nucleosome states

Ontotext GraphDB (1,621 words) [view diff] exact match in snippet view article find links to article

Peter J. (2020). "NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis". Frontiers in Genetics. 10: 1366. doi:10.3389/fgene.2019.01366

PTC tasting (1,442 words) [view diff] exact match in snippet view article find links to article

amplification of a region of the gene TAS2R38. The amplified fragment (amplicon) is incubated with the restriction enzyme HaeIII, comprising the SNP in

Nanopore sequencing (4,564 words) [view diff] exact match in snippet view article find links to article

framework for real-time monitoring, analysis and adaptive sampling of viral amplicon nanopore sequencing". Frontiers in Genetics. 14. doi:10.3389/fgene.2023

Viral quasispecies (10,827 words) [view diff] exact match in snippet view article find links to article

a given amplicon (sequence under analysis); minority mutations in an amplicon cannot be reliably linked to mutations in a different amplicon of the same

Viability PCR (742 words) [view diff] exact match in snippet view article find links to article

have been replaced by led based instruments.[1][2] - The use of long PCR amplicons as targets. - The increase of temperature during dark incubation. Through

Bacterial taxonomy (7,935 words) [view diff] exact match in snippet view article find links to article

amplifying its 16S gene with universal primers and sequence the 1.4kb amplicon and submit it to a specialised web-based identification database, namely

Kompetitive allele specific PCR (988 words) [view diff] exact match in snippet view article find links to article

forward primer is generated when the common reverse primer binds to the amplicon formed in the first round of PCR. Finally, the thermocycling of the PCR

DNA methylation (13,262 words) [view diff] exact match in snippet view article find links to article

Pyrosequencing of bisulfite treated DNA. This is the sequencing of an amplicon made by a normal forward primer but a biotinylated reverse primer to PCR

Treponema socranskii (1,529 words) [view diff] exact match in snippet view article find links to article

in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing". PLOS ONE. 7 (8): e41606. Bibcode:2012PLoSO...741606J. doi:10

PyClone (2,310 words) [view diff] exact match in snippet view article find links to article

clonal population structures present in the tumour and plasma samples from amplicon sequencing data. Stem and metastatic-clade mutation clusters can be inferred

Leptotrichia goodfellowii (1,272 words) [view diff] exact match in snippet view article find links to article

effective due to the above reasons. Researchers deconvoluted the sample using amplicon sequencing, which then allowed for appropriate pathologic diagnosis that

REPIN1 (1,190 words) [view diff] exact match in snippet view article find links to article

an origin of bidirectional replication in the dihydrofolate reductase amplicon of Chinese hamster ovary cells". Journal of Molecular Biology. 232 (3):

Diffuse large B-cell lymphoma (8,143 words) [view diff] exact match in snippet view article find links to article

X, Ren Y, Lawlor M, Shah BD, Park PM, Lwin T, et al. (May 2019). "BCL2 Amplicon Loss and Transcriptional Remodeling Drives ABT-199 Resistance in B Cell

Human endogenous retrovirus-W (4,782 words) [view diff] exact match in snippet view article find links to article

Locus Transcription in Multiple Sclerosis Brain Lesions by High-Throughput Amplicon Sequencing Katja Schmitt,a Christin Richter,a Christina". Journal of Virology

Duplex sequencing (2,260 words) [view diff] exact match in snippet view article find links to article

a costly approach. The expense limits its application to targeted and amplicon sequencing at present time and will not be applicable for whole genome

Immunocontraception (6,835 words) [view diff] exact match in snippet view article find links to article

1600-0897.2011.00999.x. PMID 21645164. "Repro-Bloc Vaccine Technology". Amplicon Vaccine, LLC. Archived from the original on 2012-10-18. Retrieved 2 June

Fish DNA barcoding (3,693 words) [view diff] exact match in snippet view article find links to article

persistence of shorter 12S fragments (~100 bp) in comparison to larger CytB amplicon (~460 bp). In general, these studies summarize that special considerations

Machine learning in bioinformatics (8,072 words) [view diff] exact match in snippet view article find links to article

published datasets from large-scale case-control studies: 16S rRNA gene amplicon data for C. difficile infection (CDI) and shotgun metagenomics data for

2003 New Year Honours (15,136 words) [view diff] exact match in snippet view article find links to article

services to People with Disabilities. Jim Hicks, Non-Executive Chairman, Amplicon Liveline Ltd. For services to Business and to the community in Sussex.

Aeroplankton (17,670 words) [view diff] exact match in snippet view article find links to article

near-surface atmosphere. Previous studies investigating bioaerosols using amplicon sequencing predominantly focussed on the bacterial fraction of the air

List of RNA-Seq bioinformatics tools (20,186 words) [view diff] exact match in snippet view article find links to article

Acacia Error-corrector for pyrosequenced amplicon reads. AllPathsLG error correction. AmpliconNoise AmpliconNoise is a collection of programs for the

Breast cancer classification (9,503 words) [view diff] exact match in snippet view article find links to article

inactivation Myc-related transcription FOXM1-related transcription HER2 amplicon and corresponding signaling pathway signature TP53 RB1 loss BRCA1 loss

Circulating free DNA (4,221 words) [view diff] exact match in snippet view article find links to article

techniques are typically used for targeted analysis of mutant cfDNA; PCR amplicon sequencing and hybrid capture sequencing. Other forms of genetic alterations

Alternative abiogenesis scenarios (9,029 words) [view diff] exact match in snippet view article find links to article

hot spring identified by microscopy, Cultivation, Single-cell PCR and Amplicon sequencing". Extremophiles. 23 (9): 35–48. doi:10.1007/s00792-018-1058-z

Glossary of cellular and molecular biology (M–Z) (21,681 words) [view diff] exact match in snippet view article

Contrast active transport. PCR See polymerase chain reaction. PCR product See amplicon. pentose Any simple sugar or monosaccharide containing five carbon atoms

Epitranscriptomic sequencing (6,385 words) [view diff] exact match in snippet view article find links to article

could be treated for 180 minutes at 60C without significant loss of PCR amplicons of the expected size. Deamination rates were determined to be 99% at 180min

Basidiobolus haptosporus (1,487 words) [view diff] exact match in snippet view article find links to article

"Differentiation of Basidiobolus spp. Isolates: RFLP of a Diagnostic PCR Amplicon Matches Sequence-Based Classification and Growth Temperature Preferences"

Genome skimming (4,505 words) [view diff] exact match in snippet view article find links to article

genomic DNA, which hinders the success of standard PCR protocols and other amplicon-based approaches. This presents an opportunity to sequence samples with

Spatial transcriptomics (6,350 words) [view diff] exact match in snippet view article find links to article

cell. Once bound with fluorescent probes featuring different colors, amplicons become highly fluorescent which allows visual detection of the signal;

David McCarthy (academic) (2,844 words) [view diff] exact match in snippet view article

high throughput sequencing approaches. His work proposed the use of 16s amplicon sequencing datasets for microbial source tracking, and was the first to

List of single cell omics methods (4,871 words) [view diff] exact match in snippet view article find links to article

Heyang M, Moral-Lopez P, et al. (January 2019). "Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells". Nature Methods

Pollution-induced community tolerance (5,692 words) [view diff] exact match in snippet view article find links to article

Piggott, J. J.; Summerfield, T. C.; Matthaei, C. D. (2017). "High-throughput amplicon sequencing and stream benthic bacteria: identifying the best taxonomic