Find link

language:

Find link is a tool written by Edward Betts.

Longer titles found: International Nucleotide Sequence Database Collaboration (view)

searching for Sequence database 108 found (142 total)

HIV Drug Resistance Database (98 words) [view diff] case mismatch in snippet view article find links to article

Drug Resistance Database, also known as Stanford HIV RT and Protease Sequence Database, is a database at Stanford University that tracks 93 common mutations

Entrez (741 words) [view diff] exact match in snippet view article find links to article

Mendelian Inheritance in Man (OMIM) Nucleotide: sequence database (GenBank) Protein: sequence database (GenPept) Genome: whole genome sequences and mapping

Bottom-up proteomics (547 words) [view diff] exact match in snippet view article find links to article

peptides or their tandem mass spectra with those predicted from a sequence database or annotated peptide spectral in a peptide spectral library, peptides

Reptile Database (605 words) [view diff] exact match in snippet view article find links to article

Thure Etzold had developed the first web interface for the EMBL DNA sequence database which was also used as interface for the Reptile Database. In 2006

FIZ Karlsruhe (656 words) [view diff] case mismatch in snippet view article find links to article

Compendex, Derwent World Patents Index, INPADOC, the USPTO Genetic Sequence Database (USGENE), and GENESEQ. In May 2009, FIZ Karlsruhe became the European

Peptide spectral library (787 words) [view diff] exact match in snippet view article find links to article

Sequence database searching is widely used currently for mass spectra based protein identification. In this approach, a protein sequence database is

Reference genome (3,497 words) [view diff] exact match in snippet view article find links to article

genome (also known as a reference assembly) is a digital nucleic acid sequence database, assembled by scientists as a representative example of the set of

Perrin's beaked whale (3,520 words) [view diff] exact match in snippet view article find links to article

identified as Hector's beaked whales (Mesoplodon hectori), but the mtDNA sequence database of beaked whales revealed the specimens were genetically distinct

MiRBase (415 words) [view diff] case mismatch in snippet view article find links to article

PMID 17991681. Griffiths-Jones, Sam (2006). "MiRBase: the MicroRNA Sequence Database". MicroRNA Protocols. Methods in Molecular Biology. Vol. 342. pp. 129–38

FASTA (1,464 words) [view diff] exact match in snippet view article find links to article

format used as input for this software is now largely used by other sequence database search tools (such as BLAST) and sequence alignment programs (Clustal

List of mass spectrometry software (3,996 words) [view diff] exact match in snippet view article find links to article

Tahmina A.; Hoopmann, Michael R. (2013). "Comet: An open-source MS/MS sequence database search tool". Proteomics. 13 (1): 22–24. doi:10.1002/pmic.201200439

Rfam (1,164 words) [view diff] exact match in snippet view article find links to article

created as a result of a search using the covariance model against the sequence database. All detected homologs are aligned to the model, giving the automatically

CD109 (725 words) [view diff] case mismatch in snippet view article find links to article

Library of Medicine. "Entrez Gene: CD109 CD109 molecule". "IPD - HPA Sequence Database| EBI". Lucas GF, Metcalfe P (2000). "Platelet and granulocyte glycoprotein

Histone Database (676 words) [view diff] case mismatch in snippet view article find links to article

PMC 307093. PMID 7651829. Baxevanis AD, Landsman D (1996). "Histone Sequence Database: a compilation of highly-conserved nucleoprotein sequences". Nucleic

Nuvelo (988 words) [view diff] exact match in snippet view article find links to article

analyzed per month during 1997, Hyseq was a large partial human gene sequence database with over 5,000,000 sequences. The HyX platform had five core technologies:

Protein kinase (1,701 words) [view diff] exact match in snippet view article find links to article

PMID 1835513. Hanks SK, Quinn AM (1991). "Protein kinase catalytic domain sequence database: Identification of conserved features of primary structure and classification

IDistance (866 words) [view diff] case mismatch in snippet view article find links to article

Ooi, Xiaofang Zhou, Towards Effective Indexing for Very Large Video Sequence Database, Proceedings of the ACM SIGMOD International Conference on Management

TTK (gene) (835 words) [view diff] exact match in snippet view article

kinase". Hanks SK, Quinn AM (1991). "Protein kinase catalytic domain sequence database: Identification of conserved features of primary structure and classification

Nucleic acid (2,848 words) [view diff] exact match in snippet view article find links to article

laboratories worldwide. In addition to maintaining the GenBank nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides

Shotgun proteomics (1,660 words) [view diff] exact match in snippet view article find links to article

identify the protein from which they derive by searching against a sequence database with commercially available software (e.g. Sequest or Mascot). Examples

Biological database (1,561 words) [view diff] exact match in snippet view article find links to article

constant challenge for information exchange. For instance, if a DNA sequence database stores the DNA sequence along the name of a species, a name change

MEME suite (1,119 words) [view diff] exact match in snippet view article find links to article

Occurrences (FIMO) is a tool for finding instances of motifs in a sequence database. FIMO searches the database for the provided motifs, and reports a

Rolf Apweiler (650 words) [view diff] exact match in snippet view article find links to article

Heidelberg University. Apweiler has been working on the Swiss-Prot protein sequence database since 1987, and in 1994 he became leader of the Swiss-Prot group.

Open reading frame (1,996 words) [view diff] exact match in snippet view article find links to article

sequence can be saved in various formats and searched against the sequence database using the basic local alignment search tool (BLAST) server. The ORF

Donna R. Maglott (1,387 words) [view diff] exact match in snippet view article find links to article

(2007-01-01). "NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins". Nucleic Acids Research. 35

Consensus CDS Project (2,912 words) [view diff] case mismatch in snippet view article find links to article

integrate new data sets submitted to the International Nucleotide Sequence Database Collaboration (INSDC), and on ongoing curation activities that supplement

Prolamin (303 words) [view diff] exact match in snippet view article find links to article

Langridge, JI; Clare Mills, EN (23 June 2017). "A curated gluten protein sequence database to support development of proteomics methods for determination of

Walter Goad (716 words) [view diff] case mismatch in snippet view article find links to article

established the Los Alamos Sequence Database to collect nucleotide sequences that could be used for analysis. The Los Alamos Sequence Database was intended to be

Protein domain (8,443 words) [view diff] exact match in snippet view article find links to article

WC (1996). "[3] PIR-International protein sequence database". PIR-International Protein Sequence Database. Methods in Enzymology. Vol. 266. pp. 41–59

BRAF (gene) (5,393 words) [view diff] exact match in snippet view article

Hanks SK, Quinn AM (1991). "[2] Protein kinase catalytic domain sequence database: Identification of conserved features of primary structure and classification

Macro-haplogroup L (4,247 words) [view diff] exact match in snippet view article find links to article

Argentina: towards a first nationwide forensic mitochondrial DNA sequence database". International Journal of Legal Medicine. 124 (4): 263–268. doi:10

Peptide mass fingerprinting (1,518 words) [view diff] case mismatch in snippet view article find links to article

D G George; Dayhoff, and M. O. (1983). "Protein and Nucleic Acid Sequence Database Systems". Annual Review of Biophysics and Bioengineering. 12 (1):

Subtypes of HIV (3,864 words) [view diff] case mismatch in snippet view article find links to article

mutations, and made available through the Stanford HIV RT and Protease Sequence Database.[citation needed] HIV superinfection History of HIV/AIDS Epidemiology

Phyre (2,057 words) [view diff] exact match in snippet view article find links to article

these sequences are processed by scanning against a large protein sequence database. The result is a database of profiles or HMMs, one for each known

First International Conference on the World-Wide Web (1,596 words) [view diff] case mismatch in snippet view article find links to article

HEASARC Browse - NASA Goddard Space Flight Center SWISS-PROT Protein Sequence Database - Geneva U. Hospital Physics E-Print Archives - Paul Ginsparg, Los

List of restriction enzyme cutting sites (1,087 words) [view diff] exact match in snippet view article find links to article

& TrEMBL". Retrieved 2010-01-25. Swiss-Prot is a curated protein sequence database which strives to provide a high level of annotation (such as the description

Metronidazole (5,639 words) [view diff] exact match in snippet view article find links to article

Aujoulat F, Lozniewski A, Marchandin H (February 2019) [2019-02]. "A sequence database analysis of 5-nitroimidazole reductase and related proteins to expand

HBV RNA encapsidation signal epsilon (323 words) [view diff] case mismatch in snippet view article find links to article

M301069200. PMID 12851401. Page for HBV RNA encapsidation signal epsilon at Rfam HBVRegDB Hepatitis B Virus HBV Regulatory Sequence Database (HBVRegDB) v t e

Gliadin (1,759 words) [view diff] exact match in snippet view article find links to article

Langridge JI, Clare Mills EN (June 2017). "A curated gluten protein sequence database to support development of proteomics methods for determination of

ARB Project (301 words) [view diff] exact match in snippet view article find links to article

package comprises a variety of directly interacting software tools for sequence database maintenance and analysis controlled by a common graphical user interface

EzTaxon Database (422 words) [view diff] exact match in snippet view article find links to article

Chun, J (2012). "Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species". Int J Syst Evol

Human leukocyte antigen (5,942 words) [view diff] case mismatch in snippet view article find links to article

Double Helix, London: Granada, 1982 (ISBN 0-246-11760-5). IMGT/HLA Sequence Database at European Bioinformatics Institute hla.alleles.org HLA Informatics

Sequence clustering (969 words) [view diff] exact match in snippet view article find links to article

Protein Sequence Culling Server RDB90 UniRef: A non-redundant UniProt sequence database Uniclust: A clustered UniProtKB sequences at the level of 90%, 50%

Amos Bairoch (2,273 words) [view diff] exact match in snippet view article find links to article

While working on PC/Gene he started to develop an annotated protein sequence database which became Swiss-Prot and was first released in July 1986. From

Ribosomal frameshift (2,642 words) [view diff] exact match in snippet view article find links to article

frameshifts and introns FastY — compare a DNA sequence to a protein sequence database, allowing gaps and frameshifts Path Archived 19 July 2011 at the Wayback

Index of molecular biology articles (1,969 words) [view diff] exact match in snippet view article find links to article

pseudobaptigenin synthase - pseudogene - pseudoknot - pseudorevertant - pulse sequence database - pulsed field gel electrophoresis - purine - PyrC leader - PyrD leader

Mitochondrial DNA (10,782 words) [view diff] exact match in snippet view article find links to article

Witthuhn RC (November 2011). "Establishment of a mitochondrial DNA sequence database for the identification of fish species commercially available in South

Model organism (9,329 words) [view diff] exact match in snippet view article find links to article

model of colorectal and intestinal cancer RefSeq - the Reference Sequence database Fields, S.; Johnston, M (2005-03-25). "CELL BIOLOGY: Whither Model

SARS-CoV-2 Beta variant (6,075 words) [view diff] exact match in snippet view article find links to article

genomic sequences from this lineage were submitted to the GISAID sequence database.[better source needed] On 23 December 2020, UK health minister Matt

Frameshift mutation (4,728 words) [view diff] exact match in snippet view article find links to article

frameshifts and introns FastY - compare a DNA sequence to a protein sequence database, allowing gaps and frameshifts Path Archived 2011-07-19 at the Wayback

N-alpha-acetyltransferase 10 (4,962 words) [view diff] exact match in snippet view article find links to article

2007). "NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins". Nucleic Acids Research. 35

JADE1 (6,055 words) [view diff] exact match in snippet view article find links to article

similar to the human zinc finger protein BR140 (BRPF1). Based on sequence database analysis the study suggested that PHF17 may function in nucleic acid

Slippery sequence (551 words) [view diff] exact match in snippet view article find links to article

frameshifts and introns FastY - compare a DNA sequence to a protein sequence database, allowing gaps and frameshifts Path Archived 2011-07-19 at the Wayback

Papillomaviridae (7,370 words) [view diff] exact match in snippet view article find links to article

maintains a comprehensive (albeit somewhat dated) papillomavirus sequence database. This useful database provides detailed descriptions and references

C3orf14 (895 words) [view diff] exact match in snippet view article find links to article

2007). "NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins". Nucleic Acids Research. 35

Timeline of the COVID-19 pandemic in January 2020 (17,528 words) [view diff] exact match in snippet view article find links to article

University, deposits the second known complete genome (Wuhan-Hu-1) in sequence database GenBank. The sequence record was initially embargoed and thus not

KIAA0895L (655 words) [view diff] exact match in snippet view article find links to article

KIAA0895L. These are predicted in all mammalian orthologs in the public sequence database. No proteins that interact with KIAA0895L or its homolog have yet

Gene prediction (3,555 words) [view diff] exact match in snippet view article find links to article

success of this approach is limited by the contents and accuracy of the sequence database. A high degree of similarity to a known messenger RNA or protein product

Microbial DNA barcoding (2,728 words) [view diff] exact match in snippet view article find links to article

Throughput Sequences (HTS)-derived gene fragments to a reference sequence database, e.g. NCBI. These mentioned qualities make DNA barcoding a cost-effective

Tim Hubbard (1,336 words) [view diff] exact match in snippet view article find links to article

(2013). "Current status and new features of the Consensus Coding Sequence database". Nucleic Acids Research. 42 (Database issue): D865 – D872. doi:10

Discovery and development of HIV-protease inhibitors (4,117 words) [view diff] case mismatch in snippet view article find links to article

high-level protease inhibitor resistance. The Stanford HIV RT and Protease Sequence Database (also called the “HIV Drug Resistance Database”) was formed in 1998

Protein kinase domain (1,562 words) [view diff] exact match in snippet view article find links to article

PMID 15299526. Hanks SK, Quinn AM (1991). "Protein kinase catalytic domain sequence database: Identification of conserved features of primary structure and classification

SARS-CoV-2 Alpha variant (18,237 words) [view diff] exact match in snippet view article find links to article

2020 in Greater London. These sequences were submitted to the GISAID sequence database (sequence accessions EPI_ISL_601443 and EPI_ISL_581117, respectively)

Kabat numbering scheme (217 words) [view diff] case mismatch in snippet view article find links to article

produced the first numbering scheme in 1970. The KabatMan (Kabat Sequence Database) is a database collecting antibody sequences. "A description of the

Venenivibrio stagnispumantis (503 words) [view diff] exact match in snippet view article find links to article

sequence for strain CP.B2 is deposited in the GenBank nucleotide sequence database under accession number DQ989208. The G+C content of the genomic DNA

PatternHunter (960 words) [view diff] case mismatch in snippet view article find links to article

doi:10.1016/0888-7543(91)90071-L. PMID 1774068. Zhang, Louxin. "Sequence Database Search Techniques I: Blast and PatternHunter tools" (PDF). Retrieved

Grid-oriented storage (832 words) [view diff] case mismatch in snippet view article find links to article

Thompson and Michael Parker, Grid-based Data Access to Nucleotide Sequence Database with 6x Improvement in Response Times, New Generation Computing, No

Gilbert's whistler (1,825 words) [view diff] exact match in snippet view article find links to article

literature as being plain. There are several entries in the GenBank DNA sequence database for Pachycephala inornata. The adult male, which weighs 29.8-32.5

Association rule learning (6,709 words) [view diff] exact match in snippet view article find links to article

common to more than minsup (minimum support threshold) sequences in a sequence database, where minsup is set by the user. A sequence is an ordered list of

Machine learning in bioinformatics (8,279 words) [view diff] exact match in snippet view article find links to article

biological information and data, including the GenBank nucleic acid sequence database and the PubMed database of citations and abstracts for published life

Research data archiving (3,070 words) [view diff] case mismatch in snippet view article find links to article

appropriate public databases (e.g., GenBank; the EMBL Nucleotide Sequence Database; DNA Database of Japan; the Protein Data Bank; and Swiss-Prot). Accession

Numbers season 2 (708 words) [view diff] case mismatch in snippet view article find links to article

geometric progression and exponential growth. Neil Sloane's Integer Sequence Database was also used. 36 23 "Undercurrents" J. Miller Tobin J. David Harden

David M. Geiser (316 words) [view diff] exact match in snippet view article find links to article

Jimenez-Gasco MDM... O'Donnell K (2004). FUSARIUM-ID v 1.0: A DNA sequence database for identifying Fusarium. European Journal of Plant Pathology. 110(5-6):

BLAT (bioinformatics) (2,168 words) [view diff] exact match in snippet view article

coordinates; Alignment of a protein or mRNA sequence from one species onto a sequence database from another species to determine homology. Provided the two species

Gemmiger formicilis (221 words) [view diff] exact match in snippet view article find links to article

orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names". Systematic and Applied

Sirtuin 2 (3,217 words) [view diff] exact match in snippet view article find links to article

four different human splice variants are deposited in the GenBank sequence database. SIRT2 gene encodes a member of the sirtuin family of proteins, homologs

SequenceBase (385 words) [view diff] case mismatch in snippet view article find links to article

Retrieved 2016-07-13. Grohol, John M. (2016-04-30). "USPTO Genetic Sequence Database, USGENE, available on STN International". Psych Central. Archived

Nik operon (668 words) [view diff] exact match in snippet view article find links to article

protein represses transcription of nikABCDE. Using profile-based sequence database searches, NikR was shown to be a member of the ribbon-helix-helix

Brachypodium distachyon (1,727 words) [view diff] exact match in snippet view article find links to article

BAC libraries, genetic markers, mapping populations, and a genome sequence database. Recently, efficient Agrobacterium-mediated transformation systems

Computational immunology (4,389 words) [view diff] exact match in snippet view article find links to article

Parham P, Bodmer JG, Marsh SG (March 2000). "IMGT/HLA database—a sequence database for the human major histocompatibility complex". Tissue Antigens.

Grapevine Pinot gris virus (800 words) [view diff] case mismatch in snippet view article find links to article

complete genomic sequence could not be found in the NCBI Reference Sequence Database, the genome was considered completely novel, and the virus officially

RNA motif (817 words) [view diff] exact match in snippet view article find links to article

Such patterns can be used to find matching subsequences in a large sequence database. Several software packages implement such a search, e.g. RNArobo and

Gemmiger (302 words) [view diff] exact match in snippet view article find links to article

orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names". Systematic and Applied

AMRFinderPlus (690 words) [view diff] exact match in snippet view article find links to article

millions of additional proteins included in NCBI’s non redundant protein sequence database. Under the rules of the United States Copyright Act, NCBI AMRFinderPlus

List of sequence alignment software (2,358 words) [view diff] exact match in snippet view article find links to article

alignment program, slow and not accurate for short reads, and uses a sequence database (EST, Sanger sequence) rather than a reference genome. BLAT Made by

Compsomyiops callipes (1,427 words) [view diff] exact match in snippet view article find links to article

determined. This information is currently being put in a reference sequence database that would make it easily accessible for forensic entomologists around

CyberCell (586 words) [view diff] exact match in snippet view article find links to article

PMC 308842. PMID 14681416. Rudd, K.E. (2000). "EcoGene: a genome sequence database for Escherichia coli K-12". Nucleic Acids Res. 28 (1): 60–64. doi:10

PhylomeDB (759 words) [view diff] exact match in snippet view article find links to article

databases has been extended to include the major Arabidopsis thaliana sequence database TAIR, Drosophila’s Flybase, as well as the Ascomycete-based genome

Glossary of cellular and molecular biology (0–L) (30,247 words) [view diff] exact match in snippet view article

search for matches between a specific query sequence and a digital sequence database such as a genome library, with the program returning a list of sequences

De novo peptide sequencing (4,013 words) [view diff] exact match in snippet view article find links to article

1093/bioinformatics/11.4.427. PMID 8521052. Taylor, JA; Johnson, RS (1997). "Sequence database searches via de novo peptide sequencing by tandem mass spectrometry"

Triticeae glutens (2,412 words) [view diff] exact match in snippet view article find links to article

Langridge, JI; Clare Mills, EN (23 June 2017). "A curated gluten protein sequence database to support development of proteomics methods for determination of

Pseudobathylagus (1,172 words) [view diff] case mismatch in snippet view article find links to article

Hastings, Philip A.; Burton, Ron S. (2008-11-01). "Establishing a DNA Sequence Database for the Marine Fish Fauna of California". UC San Diego: California

Steven A. Benner (3,908 words) [view diff] exact match in snippet view article find links to article

Benner, SA (5 June 1992). "Exhaustive matching of the entire protein sequence database" (PDF). Science. 256 (5062): 1443–5. Bibcode:1992Sci...256.1443G.

SEA-PHAGES (1,270 words) [view diff] exact match in snippet view article find links to article

to the National Center for Biotechnology Information's (NCBI) DNA sequence database GenBank. If there is still time in the semester or the sent DNA was

List of homing endonuclease cutting sites (2,374 words) [view diff] exact match in snippet view article find links to article

& TrEMBL". Retrieved 2010-01-25. Swiss-Prot is a curated protein sequence database which strives to provide a high level of annotation (such as the description

Substitution model (8,854 words) [view diff] exact match in snippet view article find links to article

Benner SA (June 1992). "Exhaustive matching of the entire protein sequence database". Science. 256 (5062): 1443–1445. Bibcode:1992Sci...256.1443G. doi:10

Palm Creek virus (626 words) [view diff] case mismatch in snippet view article find links to article

journal}}: CS1 maint: multiple names: authors list (link) Polyprotein sequence at Virus Sequence Database Profile at UniProt Profile at NCBI Taxonomy Browser

HIKESHI (2,195 words) [view diff] case mismatch in snippet view article find links to article

Archived April 11, 2006, at the Wayback Machine "RefSeq: NCBI Reference Sequence Database". "Expression profile for C11orf73". GeneNote version 2.4. Weizmann

NAA15 (3,013 words) [view diff] exact match in snippet view article find links to article

2007). "NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins". Nucleic Acids Research. 35

Demographics of the Southern Cone (3,772 words) [view diff] exact match in snippet view article find links to article

Argentina: towards a first nationwide forensic mitochondrial DNA sequence database". International Journal of Legal Medicine. 124 (4): 263–268. doi:10

Robert Ledley (6,187 words) [view diff] exact match in snippet view article find links to article

served as a model for the Protein Data Bank and the nucleic acid sequence database GenBank, both now major resources for biologists. After Dayhoff died

Xenophilus azovorans (2,497 words) [view diff] exact match in snippet view article find links to article

a graphic package that contains tools needed for the handling of sequence database and data analysis and has led to the establishment of an interdisciplinary

Magnesium transporter (12,027 words) [view diff] exact match in snippet view article find links to article

The gene was initially identified in the A. thaliana genomic DNA sequence database, by its similarity to the SLC8 family of Na+/Ca2+ exchanger genes

MicrobesOnline (4,652 words) [view diff] exact match in snippet view article find links to article

(2007). "NCBI reference sequences (Ref Seq): A curated non-redundant sequence database of genomes, transcripts and proteins". Nucleic Acids Research. 35

Viral phylodynamics (11,377 words) [view diff] exact match in snippet view article find links to article

within-host HIV phylogenies. Sequences were downloaded from the LANL HIV sequence database. Neighbor-joining trees were estimated from Alignment1, and the within

MicroRNA sequencing (5,200 words) [view diff] exact match in snippet view article find links to article

analysis. Each of the remaining sequences are aligned against a miRNA sequence database (such as miRBase) In order to account for imperfect DICER processing

Elisabeth Gasteiger (1,195 words) [view diff] exact match in snippet view article find links to article

Gasteiger, E., Jung, E., Bairoch, A. (2001). "The SWISS-PROT protein sequence database and its applications in proteomics." Bioinformatics, 17(2), 305–306

Ancient pathogen genomics (5,955 words) [view diff] exact match in snippet view article find links to article

or the per cent identity. The bit-score is the requires size of a sequence database in which the current match could be found just by chance. The higher