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searching for Science Software 548 found (807 total)

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Celestia is a real-time 3D astronomy software program that was created in 2001 by Chris Laurel. The program allows users to virtually travel through the

The Berkeley Open Infrastructure for Network Computing (BOINC, pronounced /bɔɪŋk/ –rhymes with "oink") is an open-source middleware system for volunteer

KAlgebra is a mathematical graph calculator included in the KDE education package. While it is based on the MathML content markup language, knowledge of

Ghemical is a computational chemistry software package written in C++ and released under the GNU General Public License. The program has graphical user

PhysX is an open-source realtime physics engine middleware SDK developed by Nvidia as part of the Nvidia GameWorks software suite. Initially, video games

Stellarium is a free and open-source planetarium, licensed under the terms of the GNU General Public License version 2 or any later version, available

Theano is a Python library and optimizing compiler for manipulating and evaluating mathematical expressions, especially matrix-valued ones. In Theano,

RStudio IDE (or RStudio) is an integrated development environment for R, a programming language for statistical computing and graphics. It's available

T2 Temporal Prover is an automated program analyzer developed in the Terminator research project at Microsoft Research. T2 aims to find whether a program

ChemDraw™ is a molecule editor and communication suite, for the management, reporting, and presentation of chemistry research and discoveries. ChemDraw

CP2K is a freely available (GPL) quantum chemistry and solid state physics program package, written in Fortran 2008, to perform atomistic simulations of

XDrawChem is a free software program for drawing chemical structural formulas, available for Unix and macOS. It is distributed under the GNU GPL. In Microsoft

Nanoscale Molecular Dynamics (NAMD, formerly Not Another Molecular Dynamics Program) is computer software for molecular dynamics simulation, written using

Avogadro is a molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials

JOELib is computer software, a chemical expert system used mainly to interconvert chemical file formats. Because of its strong relationship to informatics

3D Slicer (Slicer) is a free and open source software package for image analysis and scientific visualization. Slicer is used in a variety of medical applications

Cantor is a free software mathematics application for scientific statistics and analysis. It is part of the KDE Software Compilation 4, and was introduced

Prime95, also distributed as the command-line utility mprime for FreeBSD and Linux, is a freeware application written by George Woltman. It is the official

Orange is an open-source data visualization, machine learning and data mining toolkit. It features a visual programming front-end for exploratory qualitative

i-Tree is a collection of urban and rural forestry analysis and benefits assessment tools. It was designed and developed by the United States Forest Service

Molekel is a free software multiplatform molecular visualization program. It was originally developed at the University of Geneva by Peter F. Flükiger

SOFA Statistics is an open-source statistical package. The name stands for Statistics Open For All. It has a graphical user interface and can connect directly

PyTorch is a machine learning library based on the Torch library, used for applications such as computer vision and natural language processing, originally

QuteMol is an open-source, interactive, molecular visualization system that was based on advanced rendering techniques that make possible to have for the

Cantera is an open-source chemical kinetics software used for solving chemically reacting laminar flows. It has been used as a third-party library in external

CASINO is a quantum Monte Carlo program that was originally developed in the Theory of Condensed Matter group at the Cavendish Laboratory in Cambridge

orbit@home was a BOINC-based volunteer computing project of the Planetary Science Institute. It uses the "Orbit Reconstruction, Simulation and Analysis"

Abalone is a general purpose molecular dynamics and molecular graphics program for simulations of bio-molecules in a periodic boundary conditions in explicit

OELib was an open source Cheminformatics library written by Matt Stahl and based on the ideas of OBabel. Its actual GPLed C++ and Java based successors

Ezmol, stylized EzMol, is a web server for molecular modelling. Ezmol is a molecular modeling web server for the visualisation of protein molecules. It

SPSS Statistics is a statistical software suite developed by IBM for data management, advanced analytics, multivariate analysis, business intelligence

Gabedit is a graphical user interface to GAMESS (US), Gaussian, MOLCAS, MOLPRO, MPQC, OpenMopac, PC GAMESS, ORCA and Q-Chem computational chemistry packages

The baudline time-frequency browser is a signal analysis tool designed for scientific visualization. It runs on several Unix-like operating systems under

The Natural Language Toolkit, or more commonly NLTK, is a suite of libraries and programs for symbolic and statistical natural language processing (NLP)

Ecopath with Ecosim (EwE) is a free and open source ecosystem modelling software suite, initially started at NOAA by Jeffrey Polovina, but has since primarily

OpenChrom is an open source software for the analysis and visualization of mass spectrometric and chromatographic data. Its focus is to handle native data

Dalton (named after John Dalton) is an ab initio quantum chemistry computer program suite, consisting of the Dalton and LSDalton programs. The Dalton suite

EXC is a condensed matter physics many-body theory software package implementing the Bethe–Salpeter equation in frequency-reciprocal space and on a plane

KLettres is an educational program that helps the users learn the alphabet as well as pronunciation. It is free and open source software, licensed under

LabKey Server is a software suite available for scientists to integrate, analyze, and share biomedical research data. The platform provides a secure data

SciPy (pronounced /ˈsaɪpaɪ/ "sigh pie") is a free and open-source Python library used for scientific computing and technical computing. SciPy contains

Matplotlib (portmanteau of MATLAB, plot, and library) is a plotting library for the Python programming language and its numerical mathematics extension

X-13ARIMA-SEATS, successor to X-12-ARIMA and X-11, is a set of statistical methods for seasonal adjustment and other descriptive analysis of time series

RasMol is a computer program written for molecular graphics visualization intended and used mainly to depict and explore biological macromolecule structures

AMPAC is a general-purpose semiempirical quantum chemistry program. It is marketed by Semichem, Inc. and was developed originally by Michael Dewar and

General Atomic and Molecular Electronic Structure System (GAMESS-UK) is a computer software program for computational chemistry. The original code split

A concordancer is a computer program that automatically constructs a concordance. The output of a concordancer may serve as input to a translation memory

QuantumATK (formerly Atomistix ToolKit or ATK) is a commercial software for atomic-scale modeling and simulation of nanosystems. The software was originally

Massively Parallel Quantum Chemistry (MPQC) is an ab initio computational chemistry software program. Three features distinguish it from other quantum

Dirac (named after Paul Dirac; own notation DIRAC) is a relativistic ab initio quantum chemistry program. The full name is Program for Atomic and Molecular

Massively Parallel Quantum Chemistry (MPQC) is an ab initio computational chemistry software program. Three features distinguish it from other quantum

QuantumATK (formerly Atomistix ToolKit or ATK) is a commercial software for atomic-scale modeling and simulation of nanosystems. The software was originally

Marble is a virtual globe application which allows the user to choose among the Earth, the Moon, Venus, Mars and other planets to display as a 3-D model

Voreen (volume rendering engine) is an open-source volume visualization library and development platform. Through the use of GPU-based volume rendering

Dataplot is a public domain software system for scientific visualization and statistical analysis. It was developed and is being maintained at the National

NI Multisim (formerly MultiSIM) is an electronic schematic capture and simulation program which is part of a suite of circuit design programs, along with

Dirac (named after Paul Dirac; own notation DIRAC) is a relativistic ab initio quantum chemistry program. The full name is Program for Atomic and Molecular

StatXact is a statistical software package for analyzing data using exact statistics. It calculates exact p-values and confidence intervals for contingency

AIMAll is a multiplatform, quantum chemistry software package whose primary purpose is to perform quantitative and visual Atoms in Molecules (AIM) analyses

Microfit is a statistics package developed by Bahram Pesaran and M. Hashem Pesaran, and published by Oxford University Press. It is designed for econometric

PSPP is a free software application for analysis of sampled data, intended as a free alternative for IBM SPSS Statistics. It has a graphical user interface

Waikato Environment for Knowledge Analysis (Weka) is a collection of machine learning and data analysis free software licensed under the GNU General Public

GNU Octave is a scientific programming language for scientific computing and numerical computation. Octave helps in solving linear and nonlinear problems

FreeFem++ is a programming language and a software focused on solving partial differential equations using the finite element method. FreeFem++ is written

Artificial Intelligence System (AIS) was a volunteer computing project undertaken by Intelligence Realm, Inc. with the long-term goal of simulating the

MLwiN is a statistical software package for fitting multilevel models. It uses both maximum likelihood estimation and Markov chain Monte Carlo (MCMC) methods

rDock (previously RiboDock) is an open-source molecular docking software that be used for docking small molecules against proteins and nucleic acids. It

ORCA is a general-purpose quantum chemistry package featuring a variety of methods including semi-empirical, density functional theory, many-body perturbation

CADPAC, the Cambridge Analytic Derivatives Package, is a suite of programs for ab initio computational chemistry calculations. It has been developed by

BigDFT is a free software package for physicists and chemists, distributed under the GNU General Public License, whose main program allows the total energy

PLUMED is an open-source library implementing enhanced-sampling algorithms, various free-energy methods, and analysis tools for molecular dynamics simulations

The JME Molecule Editor is a molecule editor Java applet with which users make and edit drawings of molecules and reactions (including generating substructure

ImageJ is a Java-based image processing program developed at the National Institutes of Health and the Laboratory for Optical and Computational Instrumentation

Ascalaph Designer is a computer program for general purpose molecular modelling for molecular design and simulations. It provides a graphical environment

The Seasonal Attribution Project is a climate'prediction.net sub-project, with support from the WWF. It runs a high resolution model in order to try to

APBS (previously also Advanced Poisson-Boltzmann Solver) is a free and open-source software for solving the equations of continuum electrostatics intended

COSILAB is a software tool for solving complex chemical kinetics problems. It is used worldwide in research and industry, in particular in automotive,

Spinhenge@home was a volunteer computing project on the BOINC platform, which performs extensive numerical simulations concerning the physical characteristics

Python-based Simulations of Chemistry Framework (PySCF) is an ab initio computational chemistry program natively implemented in Python program language

SETI@home beta, is a hibernating volunteer computing project using the Berkeley Open Infrastructure for Network Computing (BOINC) platform, as a test environment

Discovery Studio is a suite of software for simulating small molecule and macromolecule systems. It is developed and distributed by Dassault Systemes BIOVIA

LHC@home is a volunteer computing project researching particle physics that uses the Berkeley Open Infrastructure for Network Computing (BOINC) platform

This is a list of computer programs that are predominantly used for molecular mechanics calculations. GPU – GPU accelerated I – Has interface Imp – Implicit

Biskit is an open source software package that facilitates research in structural bioinformatics and molecular modelling. Written in Python, it consists

Statistica is an advanced analytics software package originally developed by StatSoft and currently maintained by TIBCO Software Inc. Statistica provides

The Navy Global Environmental Model (NAVGEM) is a global numerical weather prediction computer simulation run by the United States Navy's Fleet Numerical

editor Despite the immense popularity of Qt, there continues to be science software using the GUI widgets of version 2 of GTK toolkit. Whether this is

FlexAID is a molecular docking software that can use small molecules and peptides as ligands and proteins and nucleic acids as docking targets. As the

COMSOL Multiphysics is a finite element analyzer, solver, and simulation software package for various physics and engineering applications, especially

Folding@home (FAH or F@h) is a distributed computing project aimed to help scientists develop new therapeutics for a variety of diseases by the means of

Drishti (from Sanskrit दृष्टि dr̥ṣţi, meaning "vision" or "insight") is a multi-platform, open-source volume-exploration and presentation tool. Written

Octopus is a software package for performing Kohn‍–‍Sham density functional theory (DFT) and time-dependent density functional theory (TDDFT) calculations

ABINIT is an open-source suite of programs for materials science, distributed under the GNU General Public License. ABINIT implements density functional

spaCy (/speɪˈsiː/ spay-SEE) is an open-source software library for advanced natural language processing, written in the programming languages Python and

Simfit is a free open-source Windows package for simulation, curve fitting, statistics, and plotting, using a library of models or user-defined mathematical

Dap is a statistics and graphics program based on the C programming language that performs data management, analysis, and C-style graphical visualization

Quantum ESPRESSO (Quantum Open-Source Package for Research in Electronic Structure, Simulation, and Optimization; QE) is a suite for first-principles

COmputer STored Ambulatory Record (COSTAR) is an electronic medical record using the MUMPS programming language. It was developed by the Laboratory of

gretl is an open-source statistical package, mainly for econometrics. The name is an acronym for Gnu Regression, Econometrics and Time-series Library.

The WIEN2k package is a computer program written in Fortran that performs quantum mechanical calculations on periodic solids. It uses the full-potential

HipNav was the first computer-assisted surgery system developed to guide the surgeon during total hip replacement surgery. It was developed at Carnegie

The digital repository audit method based on risk assessment (DRAMBORA) is a methodology and associated software-based toolkit developed by Digital Curation

HOSxP is a hospital information system, commonly known as an Electronic Health Record (EHR) system, used in hospitals across Thailand, serving over 300

Dap is a statistics and graphics program based on the C programming language that performs data management, analysis, and C-style graphical visualization

R is a programming language for statistical computing and data visualization. It has been adopted in the fields of data mining, bioinformatics and data

Autodesk Simulation is a general-purpose multiphysics finite element analysis software package initially developed by ALGOR Incorporated and acquired by

LAMMPS (Large-scale Atomic/Molecular Massively Parallel Simulator) is a molecular dynamics program developed by Sandia National Laboratories. It utilizes

Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments

InVesalius is a free medical software used to generate virtual reconstructions of structures in the human body. Based on two-dimensional images, acquired

BALL (Biochemical Algorithms Library) is a C++ class framework and set of algorithms and data structures for molecular modelling and computational structural

Budapest, Hungary. AIT offers undergraduate programs in computer science, software engineering, and information technology. Established in 2007, the

or browsing the web. Examples of such software are computational science software, game engines, search engines, industrial automation, and software

Scilab is a free and open-source, cross-platform numerical computational package and a high-level, numerically oriented programming language. It can be

Olex and Olex2 are versatile software for crystallographic research. Olex used to be a research project developed during PhD to implement topological (as

PEBL (Psychology Experiment Building Language) is an open source software program created by Shane T. Mueller that allows researchers to design and run

The Lattice Project was a volunteer computing project that combined computing resources, Grid middleware, specialized scientific application software and

The Model for Prediction Across Scales (MPAS) is an Earth system modeling software that integrates atmospheric, oceanographic, and cryospheric modeling

Molecular design software is notable software for molecular modeling, that provides special support for developing molecular models de novo. In contrast

Predictor@home was a volunteer computing project that used BOINC software to predict protein structure from protein sequence in the context of the 6th

Rmetrics is a free and open-source software project designed for teaching computational finance. Rmetrics is based primarily on the statistical R programming

ΧyMTeΧ is a macro package for TeX which renders high-quality chemical structure diagrams. Using the typesetting system, the name is styled as XϒMTeX. It

Similarity Matrix of Proteins (SIMAP) is a database of protein similarities created using volunteer computing. It is freely accessible for scientific purposes

Stata (/ˈsteɪtə/, STAY-ta, alternatively /ˈstætə/, occasionally stylized as STATA) is a general-purpose statistical software package developed by StataCorp

NumPy (pronounced /ˈnʌmpaɪ/ NUM-py) is a library for the Python programming language, adding support for large, multi-dimensional arrays and matrices,

Word2vec is a technique in natural language processing (NLP) for obtaining vector representations of words. These vectors capture information about the

GPUGRID is a volunteer computing project hosted by Pompeu Fabra University and running on the Berkeley Open Infrastructure for Network Computing (BOINC)

Look up functional in Wiktionary, the free dictionary. Functional may refer to: Movements in architecture: Functionalism (architecture) Form follows function

The ADCIRC model is a high-performance, cross-platform numerical ocean circulation model popular in simulating storm surge, tides, and coastal circulation

Mango (Multi-Image Analysis GUI) is a non-commercial software for viewing, editing and analyzing volumetric medical images. Mango is written in Java, and

A discovery system is a bibliographic search system based on search engine technology. It is part of the concept of Library 2.0 and is intended to supplement

Quantitative Discourse Analysis Package (qdap) is an R package for computer assisted qualitative data analysis, particularly quantitative discourse analysis

Mountains is an image analysis and surface metrology software platform published by the company Digital Surf. Its core is "micro-topography", the science

KH Coder is an open source software for computer assisted qualitative data analysis, particularly quantitative content analysis and text mining. It can

Emacs Speaks Statistics (ESS) is an Emacs package for programming in statistical languages. It adds two types of modes to emacs: ESS modes for editing

GIMIAS is a workflow-oriented environment focused on biomedical image computing and simulation. The open-source framework is extensible through plug-ins

The program ShelXle is a graphical user interface for the structure refinement program SHELXL. ShelXle combines an editor with syntax highlighting for

Advanced Simulation Library (ASL) is a free and open-source hardware-accelerated multiphysics simulation platform. It enables users to write customized

EMBOSS is a free c software analysis package developed for the needs of the molecular biology and bioinformatics user community. The software automatically

AutoChem is NASA release software[clarification needed] that constitutes an automatic computer code generator and documenter for chemically reactive systems

μFluids@Home is a computer simulation of two-phase flow behavior in microgravity and microfluidics problems at Purdue University, using the Surface Evolver

Psychophysics Toolbox Version 3 (PTB-3) is a collection of free functions for MATLAB or GNU Octave intended for use by neuroscience and vision researchers

The Dashboard of Sustainability is a free-of-charge, non-commercial software package configured to convey the complex relationships among economic, social

MedCalc is a statistical software package designed for the biomedical sciences. It has an integrated spreadsheet for data input and can import files in

TI InterActive! was a Texas Instruments computer program which combined the functionality of all of the TI graphing calculators with extra features into

POEM@Home was a volunteer computing project hosted by the Karlsruhe Institute of Technology and running on the Berkeley Open Infrastructure for Network

The EGS (Electron Gamma Shower) computer code system is a general purpose package for the Monte Carlo simulation of the coupled transport of electrons

FORM is a symbolic manipulation system. It reads text files containing definitions of mathematical expressions as well as statements that tell it how to

Docking@Home was a volunteer computing project hosted by the University of Delaware and running on the Berkeley Open Infrastructure for Network Computing

eOn was a volunteer computing project running on the Berkeley Open Infrastructure for Network Computing (BOINC) platform, which uses theoretical chemistry

evolution@home was a volunteer computing project for evolutionary biology, launched in 2001. The aim of evolution@home is to improve understanding of evolutionary

FreeMat is a free open-source numerical computing environment and programming language, similar to MATLAB and GNU Octave. In addition to supporting many

General Architecture for Text Engineering (GATE) is a Java suite of natural language processing (NLP) tools for man tasks, including information extraction

R Commander (Rcmdr) is a GUI for the R programming language, licensed under the GNU General Public License, and developed and maintained by John Fox in

Aces II (Advanced Concepts in Electronic Structure Theory) is an ab initio computational chemistry package for performing high-level quantum chemical ab

RQDA is an R package for computer-assisted qualitative data analysis or CAQDAS, making it one of the few open source tools to assist qualitative coding

eOn was a volunteer computing project running on the Berkeley Open Infrastructure for Network Computing (BOINC) platform, which uses theoretical chemistry

OpenFOAM (Open Field Operation And Manipulation) is a C++ toolbox for the development of customized numerical solvers, and pre-/post-processing utilities

The Local Data Manager (LDM) is a suite of programs for the distribution of near real-time atmospheric earth data to researchers and educators free of

QMC@Home was a volunteer computing project for the BOINC client aimed at further developing and testing Quantum Monte Carlo (QMC) for use in quantum chemistry

KANT is a computer algebra system for mathematicians interested in algebraic number theory, performing sophisticated computations in algebraic number fields

Leiden Classical was a volunteer computing project run by the Theoretical Chemistry Department of the Leiden Institute of Chemistry at Leiden University

Cosmology@Home was a volunteer computing project that uses the BOINC platform and was formerly run at the Departments of Astronomy and Physics at the University

HashClash was a volunteer computing project running on the Berkeley Open Infrastructure for Network Computing (BOINC) software platform to find collisions

HMMER is a free and commonly used software package for sequence analysis written by Sean Eddy. Its general usage is to identify homologous protein or nucleotide

proteins@home was a volunteer computing project that used the BOINC architecture. The project was run by the Department of Biology at École Polytechnique

Tile Map Service or TMS, is a specification for tiled web maps, developed by the Open Source Geospatial Foundation. The definition generally requires a

SAS (previously "Statistical Analysis System") is a statistical software suite developed by SAS Institute for data management, advanced analytics, multivariate

Help Cure Muscular Dystrophy is a volunteer computing project that runs on the BOINC platform. It is a joint effort of the French muscular dystrophy charity

Gmsh is a finite-element mesh generator developed by Christophe Geuzaine and Jean-François Remacle. Released under the GNU General Public License, Gmsh

PQS is a general purpose quantum chemistry program. Its roots go back to the first ab initio gradient program developed in Professor Peter Pulay's group

Caffe (Convolutional Architecture for Fast Feature Embedding) is a deep learning framework, originally developed at University of California, Berkeley

The Visualization Toolkit (VTK) is a free software system for 3D computer graphics, image processing and scientific visualization. VTK is distributed under

Rhea is a bioinformatic pipeline written in R language for the analysis of microbial profiles. It was released during the end of 2016 and it is publicly

Cartes du Ciel ("CDC" and "SkyChart") is a free and open source planetarium program for Linux, macOS, and Windows. With the change to version 3, Linux

Help Conquer Cancer is a volunteer computing project that runs on the BOINC platform. It is a joint project of the Ontario Cancer Institute and the Hauptman-Woodward

Cambridge Algebra System (CAMAL) is a computer algebra system written in Cambridge University by David Barton, Steve Bourne, and John Fitch. It was initially

SMath Studio is a freeware (free of charge, but not libre), closed-source, mathematical notebook program similar to Mathcad. It is available for Windows

WaveSurfer is an audio editor widely used for studies of acoustic phonetics. It is a simple but fairly powerful program for interactive display of sound

CoCoA (Computations in Commutative Algebra) is a free computer algebra system developed by the University of Genova, Italy, used to compute with numbers

The Clean Energy Project (CEP) was a virtual high-throughput discovery and design effort for the next generation of plastic solar cell materials that has

The MEMO model (version 6.2) is a Eulerian non-hydrostatic prognostic mesoscale model for wind-flow simulation. It was developed by the Aristotle University

FreeHAL was a volunteer computing project to build a self-learning chatbot. This project is no longer active. Originally, the program was called JEliza

ScicosLab is a software package providing a multi-platform environment for scientific computation. It is based on the official Scilab 4.x (BUILD4) distribution

MINOS is a Fortran software package for solving linear and nonlinear mathematical optimization problems. MINOS (Modular In-core Nonlinear Optimization

malariacontrol.net was a volunteer computing project to simulate the transmission dynamics and health effects of malaria. It was part of the Africa@home

Cabri Geometry is a commercial interactive geometry software produced by the French company Cabrilog for teaching and learning geometry and trigonometry

Car–Parrinello molecular dynamics or CPMD refers to either a method used in molecular dynamics (also known as the Car–Parrinello method) or the computational

Erable is a computer algebra system (CAS) for a family of Hewlett-Packard graphing scientific calculators of the HP 40, 48 and HP 49/50 series. Originally

Gecode (for Generic Constraint Development Environment) is a software library for solving Constraint satisfaction problems. It is programmed in C++ and

VXL, the Vision-something-Library, is a large collection of open source C++ libraries for computer vision. The idea of the naming is to replace X with

Bilbao Crystallographic Server is an open access website offering online crystallographic database and programs aimed at analyzing, calculating and visualizing

Genius (also known as the Genius Math Tool) is a free open-source numerical computing environment and programming language, similar in some aspects to

ROOT is an object-oriented computer program and library developed by CERN. It was originally designed for particle physics data analysis and contains several

lumi is a free, open source and open development software project for the analysis and comprehension of Illumina expression and methylation microarray

Elmer is a computational tool for multi-physics problems. It has been developed by CSC in collaboration with Finnish universities, research laboratories

A climate change scenario is a hypothetical future based on a "set of key driving forces".: 1812  Scenarios explore the long-term effectiveness of mitigation

Derive was a computer algebra system, developed as a successor to muMATH by the Soft Warehouse in Honolulu, Hawaii, now owned by Texas Instruments. Derive

SLinCA@Home (Scaling Laws in Cluster Aggregation) was a research project that uses Internet-connected computers to do research in fields such as physics

PyCBC is an open source software package primarily written in the Python programming language which is designed for use in gravitational-wave astronomy

XNUMBERS is a multi-precision floating point computing and numerical methods library for Microsoft Excel. Xnumbers claims to be an open source Excel addin

OProject@Home was a volunteer computing project running on the Berkeley Open Infrastructure for Network Computing (BOINC) and was based on a dedicated

Q-Chem is a general-purpose electronic structure package featuring a variety of established and new methods implemented using innovative algorithms that

XNUMBERS is a multi-precision floating point computing and numerical methods library for Microsoft Excel. Xnumbers claims to be an open source Excel addin

MindModeling@Home is an inactive non-profit, volunteer computing research project for the advancement of cognitive science. MindModeling@Home is hosted

engineering, electrical engineering, civil engineering, computer science, software engineering, data sciences, accounting and finance, management sciences

SETI@home ("SETI at home") is a project of the Berkeley SETI Research Center to analyze radio signals with the aim of searching for signs of extraterrestrial

code_saturne is a general-purpose computational fluid dynamics free computer software package. Developed since 1997 at Électricité de France R&D, code_saturne

rnn is an open-source machine learning framework that implements recurrent neural network architectures, such as LSTM and GRU, natively in the R programming

Koha is an open-source integrated library system (ILS), used world-wide by public, school and special libraries, but also in some larger academic libraries

SequenceL is a general purpose functional programming language and auto-parallelizing (Parallel computing) compiler and tool set, whose primary design

Ibercivis was a volunteer computing platform which allows internet users to participate in scientific research by donating unused computer cycles to run

EarthBrowser was a virtual globe software developed by Lunar software. It was available online as a Flash application or could be installed locally as

theSkyNet was a research project that used volunteer Internet-connected computers to carry out research in astronomy. It was an initiative of the International

Digital Design. The campus of Russas is home to courses in Computer Science, Software Engineering, Civil Engineering, Production Engineering, and Mechanical

Gensim is an open-source library for unsupervised topic modeling, document indexing, retrieval by similarity, and other natural language processing functionalities

uDig is a GIS software program produced by a community led by Canadian-based consulting company Refractions Research. uDig is based on the Eclipse platform

CircuiTikZ is a TikZ add-on for typesetting circuit diagrams in a TeX environment such as LaTeX. It was started by Massimo Redaelli in 2007 when he had

Field-Map is a proprietary integrated tool designed for programmatic field data collection from IFER – Monitoring and Mapping Solutions, Ltd. It is mainly

SpaceEngine is an interactive 3D planetarium and astronomy software initially developed by Russian astronomer and programmer Vladimir Romanyuk. Development

MilkyWay@home is a volunteer computing project in the astrophysics category, running on the Berkeley Open Infrastructure for Network Computing (BOINC)

GraphCalc is an open-source computer program that runs in Microsoft Windows and Linux that provides the functionality of a graphing calculator. GraphCalc

Referencer is a GNOME application to organize documents or references, and ultimately generate a BibTeX bibliography file. It is designed with the scientist/researcher

Xplanet is a renderer for planetary and Solar System images, capable of producing various types of graphics depicting the Solar System. It is normally

Perl Data Language (abbreviated PDL) is a set of free software array programming extensions to the Perl programming language. PDL extends the data structures

ELAN is computer software, a professional tool to manually and semi-automatically annotate and transcribe audio or video recordings. It has a tier-based

The Physics Analysis Workstation (PAW) is an interactive, scriptable computer software tool for data analysis and graphical presentation in high-energy

DataScene is a scientific graphing, animation, data analysis, and real-time data monitoring software package. It was developed with the Common Language

Planetarium software is application software that allows a user to simulate the celestial sphere at any time of day, especially at night, on a computer

Eclipse Deeplearning4j is a programming library written in Java for the Java virtual machine (JVM). It is a framework with wide support for deep learning

Analytica is a visual software developed by Lumina Decision Systems for creating, analyzing and communicating quantitative decision models. It combines

SICONOS is an open source scientific software primarily targeted at modeling and simulating non-smooth dynamical systems (NSDS): Mechanical systems (Rigid

The Grid Analysis and Display System (GrADS) is an interactive desktop tool that is used for easy access, manipulation, and visualization of earth science

Fityk is curve fitting and data analysis application, predominantly used to fit analytical, bell-shaped functions to experimental data. It is positioned

Quirkos is a CAQDAS software package for the qualitative analysis of text data, commonly used in social science. It provides a graphical interface in which

ITK is a cross-platform, open-source application development framework widely used for the development of image segmentation and image registration programs

numerical weather prediction, data assimilation, and other Earth science software applications. These applications are computationally demanding and

C.a.R. (Compass and Ruler), also known as Z.u.L. (Zirkel und Lineal), is a free and open source interactive geometry app that can do geometrical constructions

Evergreen is an open-source integrated library system (ILS), initially developed by the Georgia Public Library Service for Public Information Network for

In computational geometry, the cone algorithm is an algorithm for identifying the particles that are near the surface of an object composed of discrete

SigmaPlot is a proprietary software package for scientific graphing and data analysis. It runs on Microsoft Windows. The software can read multiple formats

Transcriber is an open-source software tool for the transcription and annotation of speech signals for linguistic research. It supports multiple hierarchical

Maestro (software) was a free program released by NASA to allow users to view photos and daily progress of the Spirit and Opportunity rovers. It served

Pipeline Pilot is a desktop software application developed by Dassault Systèmes, focused on extract, transform, and load (ETL) processes and data analytics

HippoDraw is a object-oriented statistical data analysis package written in C++, with user interaction via a Qt-based GUI and a Python-scriptable interface

Vensim is a simulation software developed by Ventana Systems. It primarily supports continuous simulation (system dynamics), with some discrete event and

Surface Evolver is an interactive program for the study of surfaces shaped by surface tension and other energies, and subject to various constraints. A

Free software portal Praat (/prɑːt/ PRAHT, Dutch: [praːt] ; transl. "Talk") is a free, open-source computer software package widely used for speech analysis

WIRIS is a company, legally registered as Maths for More, providing a set of proprietary HTML-based JavaScript tools which can author and edit mathematical

ELKI (Environment for Developing KDD-Applications Supported by Index-Structures) is a data mining (KDD, knowledge discovery in databases) software framework

ELKI (Environment for Developing KDD-Applications Supported by Index-Structures) is a data mining (KDD, knowledge discovery in databases) software framework

PrimeGrid is a volunteer computing project that searches for very large (up to world-record size) prime numbers whilst also aiming to solve long-standing

HDF Explorer is a data visualization program that reads the HDF, HDF5 and netCDF data file formats. It runs in the Microsoft Windows operating systems

OpenScientist is an integration of open source products working together to do scientific visualization and data analysis, in particular for high energy

available to the public in 1982, becoming an early example of data science software designed for use on the PC. The flagship version of Statgraphics is

Free and open-source software portal Fluentd is a cross-platform open-source data collection software project originally developed at Treasure Data. It

Cartopedia: The Ultimate World Reference Atlas was an atlas program originally published by Dorling Kindersley Multimedia in 1995. It featured interactive

QDA Miner is mixed methods and qualitative data analysis software developed by Provalis Research. The program was designed to assist researchers in managing

FLUKA (an acronym for Fluktuierende Kaskade) is a fully integrated Monte Carlo simulation package for the interaction and transport of particles and nuclei

The CLAN (Computerized Language ANalysis) program is a cross-platform program designed by Brian MacWhinney and written by Leonid Spektor for the purpose

AnyLogic is a multimethod simulation modeling tool developed by The AnyLogic Company (formerly XJ Technologies). It supports agent-based, discrete event

MagicPlot is a technical plotting, curve fitting and data analysis application. It provides a wide usage of the graphical user interface for data exploration

The term model year in computer modeling is used for calculated equations describing one calendar year of data. If a climate model, for example, is calculating

Frama-C is a set of interoperable program analyzers for C programs. The name Frama-C stands for Framework for Modular Analysis of C programs. Frama-C has

Emergent (formerly PDP++) is a biologically-based neural simulation software that is primarily intended for creating models of the brain and cognitive

RoboGEO is a geocoding software program which synchronizes a Global Positioning System tracklog with a collection of time-coded pictures. A demo is available

SU2 is a suite of open-source software tools written in C++ for the numerical solution of partial differential equations (PDE) and performing PDE-constrained

The Quake-Catcher Network was an initiative run by the University of Southern California that aimed to use computer-based accelerometers to detect earthquakes

Java Analysis Studio (JAS) is an object oriented data analysis package developed for the analysis of particle physics data. The latest major version is

MAXQDA is a software program designed for computer-assisted qualitative and mixed methods data, text and multimedia analysis in academic, scientific, and

Cassandre is a free open source software for computer assisted qualitative data analysis and interpretation in humanities and social sciences. Although

FlexPro is a proprietary software package for analysis and presentation of scientific and technical data, produced by Weisang GmbH. It runs on Microsoft

HNSKY or Hallo Northern Sky is a free and open-source planetarium program for Linux, macOS, Microsoft Windows, and Raspberry Pi to simulate the night sky

Geant4 (for GEometry ANd Tracking) is a platform for "the simulation of the passage of particles through matter" using Monte Carlo methods. It is the successor

Laboratory informatics is the specialized application of information technology aimed at optimizing and extending laboratory operations. It encompasses

Amira (ah-MEER-ah) is a software platform for visualization, processing, and analysis of 3D and 4D data. It is being actively developed by Thermo Fisher

Yet Another Scientific Artificial Reality Application (YASARA) is a computer program for molecular visualising, modelling, and dynamics. It has many scientific

Opticks is a remote sensing application that supports imagery, video (motion imagery), synthetic aperture radar (SAR), multi-spectral, hyper-spectral,

Integrated Software for Imagers and Spectrometers (Isis) is a specialized software package developed by the USGS to process images and spectra collected

The Trans-Proteomic Pipeline (TPP) is an open-source data analysis software for proteomics developed at the Institute for Systems Biology (ISB) by the

Seismic Unix is an open source seismic utilities package which was supported by the Center for Wave Phenomena (CWP) at the Colorado School of Mines (CSM)

A scientific workflow system is a specialized form of a workflow management system designed specifically to compose and execute a series of computational

FreeFlyer is a commercial off-the-shelf software application for satellite mission analysis, design, and operations. Its architecture revolves around its

Epi Map is a module that displays geographic maps with data from Epi Info. Epi Map is built around the Esri MapObjects software. Epi Map displays shapefiles

GoldSim is dynamic, probabilistic simulation software developed by GoldSim Technology Group. This general-purpose simulator is a hybrid of several simulation

tomviz is an open source software platform for reproducible volumetric visualization and data processing. The platform is designed for a wide range scientific

Molecular Dynamics of Mixtures (MDynaMix) is a computer software package for general purpose molecular dynamics to simulate mixtures of molecules, interacting

Kosmo is a desktop geographic information system (GIS) with advanced functions. It is the first of a series of developments that are being made available

X-PLOR is a computer software package for computational structural biology originally developed by Axel T. Brunger at Yale University. It was first published

The Data Documentation Initiative (also known as DDI) is an international standard for describing surveys, questionnaires, statistical data files, and

Ferret is an interactive computer visualization and analysis environment designed to meet the needs of oceanographers and meteorologists analyzing large

EgoNet (Egocentric Network Study Software) is a program for the collection and analysis of egocentric social network data. It helps the user to collect

Armadillo is a linear algebra software library for the C++ programming language. It aims to provide efficient and streamlined base calculations, while

CAT or Coding Analysis Toolkit was a web-based suite of CAQDAS tools. It is free and open source software, and is developed by the Qualitative Data Analysis

Sim4 is a nucleotide sequence alignment program akin to BLAST but specifically tailored to DNA to cDNA/EST (Expressed Sequence Tag) alignment (as opposed

GYRO is a computational plasma physics code developed and maintained at General Atomics. It solves the 5-D coupled gyrokinetic-Maxwell equations using

OpenBiblio is an open source Integrated Library System. The software is popular with small and rural libraries worldwide due to its simplicity, extensive

The Ptolemy Project is an ongoing project aimed at modeling, simulating, and designing concurrent, real-time, embedded systems. The focus of the Ptolemy

ILNumerics is a mathematical class library for Common Language Infrastructure (CLI) developers and a domain specific language (DSL) for the implementation

PYTHIA is a computer simulation program for predicting events at very high energies in particle accelerators. PYTHIA was originally written in FORTRAN

SimThyr is a free continuous dynamic simulation program for the pituitary-thyroid feedback control system. The open-source program is based on a nonlinear

Archaeological Recording Kit (ARK) is a web-based, open source software package for recording and disseminating archaeological data. ARK is primarily designed

The Ptolemy Project is an ongoing project aimed at modeling, simulating, and designing concurrent, real-time, embedded systems. The focus of the Ptolemy

Brian is an open source Python package for developing simulations of networks of spiking neurons. Brian is aimed at researchers developing models based

Earth3D was developed as part of a diploma thesis of Dominique Andre Gunia at Braunschweig University of Technology to display a virtual globe of the earth

DIVA-GIS is a free geographic information system software program used for the analysis of geographic data, especially species occurrence data. The software

Tinker, previously stylized as TINKER, is a suite of computer software applications for molecular dynamics simulation. The codes provide a complete and

Free and open-source software portal Shogun is a free, open-source machine learning software library written in C++. It offers numerous algorithms and

XEphem is a Motif based ephemeris and planetarium program for Unix-like operating systems developed by Elwood C. Downey. XEphem started as a Unix and Motif

Encog is a machine learning framework available for Java and .Net. Encog supports different learning algorithms such as Bayesian Networks, Hidden Markov

Cn3D is a Windows, Macintosh and Unix-based software from the United States National Library of Medicine that acts as a helper application for web browsers

Waffles is a collection of command-line tools for performing machine learning operations developed at Brigham Young University. These tools are written

Digital Universe Atlas is a free open source software planetarium application, available under the terms of the Illinois Open Source License, and running

CRAC-II is both a computer code (titled Calculation of Reactor Accident Consequences) and the 1982 report of the simulation results performed by Sandia

WaveLab is a collection of MATLAB functions for wavelet analysis. Following the success of WaveLab package, there is now the availability of CurveLab and

BigDL is a distributed deep learning framework for Apache Spark, created by Jason Dai at Intel. BigDL has its source code hosted on GitHub. Comparison

Kalypso is an open source modelling program. It focuses on numerical simulations in water management and ecology such as the generation of inundation and

Neuroph is an object-oriented artificial neural network framework written in Java. It can be used to create and train neural networks in Java programs

Open Source Physics, or OSP, is a project sponsored by the National Science Foundation and Davidson College, whose mission is to spread the use of open

PP3 is free software that produces sky charts, focussing on high quality graphics and typography. It is distributed a license based on the MIT License

UGENE is computer software for bioinformatics. It helps biologists to analyze various biological genetics data, such as sequences, annotations, multiple

Plotly is a technical computing company headquartered in Montreal, Quebec, that develops online data analytics and visualization tools. Plotly provides

OE-Cake, OE-CAKE! or OE Cake is a 2D fluid physics sandbox application used to demonstrate the multi-physics simulation of the Octave Engine created by

The Kinetic Simulation Algorithm Ontology (KiSAO) supplies information about existing algorithms available for the simulation of systems biology models

NEST is a simulation software for spiking neural network models, including large-scale neuronal networks. NEST was initially developed by Markus Diesmann

Winplot is a general-purpose plotting utility for Microsoft Windows that can draw (and animate) curves and surfaces presented in a variety of formats.

CNS or Crystallography and NMR system, is a software library for computational structural biology. It is an offshoot of X-PLOR and uses much of the same

Dendroscope is an interactive computer software program written in Java for viewing Phylogenetic trees. This program is designed to view trees of all sizes

XMD is a classical molecular dynamics software designed to simulate problems related to materials science. The code was developed by Jon Rifkin of University

GRAPE, or GRAphics Programming Environment is a software development environment for mathematical visualization, especially differential geometry and continuum

Emios (an acronym for Environmental Memory Interoperable Open Service) is an MDD / MDE platform that aims to provide a range of services for storing and

TRACE is a high-precision orbit determination and orbit propagation program. It was developed by The Aerospace Corporation in El Segundo, California. An

Polyworld is a cross-platform (Linux, Mac OS X) program written by Larry Yaeger to evolve Artificial Intelligence through natural selection and evolutionary

mlpack is a free, open-source and header-only software library for machine learning and artificial intelligence written in C++, built on top of the Armadillo

Massive Online Analysis (MOA) is a free open-source software project specific for data stream mining with concept drift. It is written in Java and developed

Clone Manager is a commercial bioinformatics software work suite of Sci-Ed, that supports molecular biologists with data management and allows them to

TableCurve 2D is a linear and non-linear Curve fitting software package for engineers and scientists that automates the curve fitting process and in a

Metview is a meteorological workstation and batch system developed at the European Centre for Medium-Range Weather Forecasts (ECMWF). Development began

ASReml is a statistical software package for fitting linear mixed models using restricted maximum likelihood, a technique commonly used in plant and animal

MOCADI is a Monte Carlo simulation program used to calculate the transport of charged particle beams--as well as fragmentation and fission products from

Rosetta@home is a volunteer computing project researching protein structure prediction on the Berkeley Open Infrastructure for Network Computing (BOINC)

DECIPHER is a software that can be used to decipher and manage biological sequences efficiently using the programming language R. Sequence databases: import

GEUP is a commercial interactive geometry software program on windows, similar to Cabri Geometry. Originally using the Spanish language, it was programmed

The MOEA Framework is an open-source evolutionary computation library for Java that specializes in multi-objective optimization. It supports a variety

Gnaural is brainwave entrainment software for Microsoft Windows, Mac OS X, and Linux licensed under GPL-2.0-or-later. Gnaural is free software for creating

The distributed-computing project Folding@home uses scientific computer programs, referred to as "cores" or "fahcores", to perform calculations. Folding@home's

ProteoWizard is a set of open-source, cross-platform tools and libraries for proteomics data analyses. It provides a framework for unified mass spectrometry

Agilent ChemStation is a software package to control Agilent liquid chromatography, gas chromatography, and ultraviolet-visible spectroscopy systems such

PicoScope is computer software for real-time signal acquisition of Pico Technology oscilloscopes. PicoScope is supported on Microsoft Windows, Mac OS X

Nesting algorithms are used to make the most efficient use of material or space. This could for instance be done by evaluating many different possible

TomoPy is an open-sourced Python toolbox to perform tomographic data processing and image reconstruction. Tomographic reconstruction creates three-dimensional

ProteoWizard is a set of open-source, cross-platform tools and libraries for proteomics data analyses. It provides a framework for unified mass spectrometry

World Community Grid (WCG) is an effort to create the world's largest volunteer computing platform to perform scientific research that benefits humanity

FAMOS (short for fast analysis and monitoring of signals) is a graphical data analysis program for image analysis, evaluating and visually displaying measurement

GEUP is a commercial interactive geometry software program on windows, similar to Cabri Geometry. Originally using the Spanish language, it was programmed

HR is a computer program that automatically forms mathematical theories by searching for sequences of numbers. It was written by Simon Colton,: 34–36 

vnmr is software for controlling nuclear magnetic resonance spectrometers. It is produced by Varian, Inc. The software runs on SPARC machines with Solaris

GenePattern is a freely available computational biology open-source software package originally created and developed at the Broad Institute for the analysis

Graffiti is a computer program which makes conjectures in various subfields of mathematics (particularly graph theory) and chemistry, but can be adapted

Schoonschip was one of the first computer algebra systems, developed in 1963 by Martinus J. G. Veltman, for use in particle physics. "Schoonschip" refers

Insilicos is a life science software company founded in 2002 by Erik Nilsson, Brian Pratt and Bryan Prazen. Insilicos develops scientific computing software

Gravity is a software program designed by Steve Safarik to simulate the motions of planetary bodies in space. Users can create solar systems of up to 16

StatPlus is a software product developed by AnalystSoft for basic univariate and multivariate statistical analysis (MANOVA, GLM, Latin squares), as well

VuFind® is an open-source library search engine that allows users to search and browse beyond the resources of a traditional Online public access catalog

COMBINE, the COmputational Modeling in BIology NEtwork, is an initiative to coordinate the development of the various community standards and formats for

Hazus is a geographic information system-based natural hazard analysis tool developed and freely distributed by the Federal Emergency Management Agency

Civis Analytics is a US data science software and consultancy company founded by Dan Wagner in 2013, with backing by Eric Schmidt. Wagner had served as

COGO is a suite of programs used in civil engineering for modelling horizontal and vertical alignments and solving coordinate geometry problems. Cogo alignments

SimPy stands for “Simulation in Python”, is a process-based discrete-event simulation framework based on standard Python. It enables users to model active

Marketing, Finance Bachlors of Science specialization in Computer Science & Software Engineering Bachelor of Business Administration specialization in

The Climate and Forecast (CF) metadata conventions are conventions for the description of Earth sciences data, intended to promote the processing and sharing

KAON (Karlsruhe ontology) is an ontology infrastructure developed by the University of Karlsruhe and the Research Center for Information Technologies in

Yooreeka is a library for data mining, machine learning, soft computing, and mathematical analysis. The project started with the code of the book "Algorithms

Kara (May 25, 2022). "Google Colab vs Jupyter Notebook: Compare data science software". TechRepublic. Retrieved August 15, 2022. "Nerds rejoice: Google just

The Experimental Physics and Industrial Control System (EPICS) is a set of software tools and applications used to develop and implement distributed control

ASCEND is an open source, mathematical modelling chemical process modelling system developed at Carnegie Mellon University since late 1978. ASCEND is an

A frontal solver is an approach to solving sparse linear systems which is used extensively in finite element analysis. Algorithms of this kind are variants

Exercise prescription software is a branch of computer software designed to aid in the construction of exercise programmes or regimes for patients who

MIKE FLOOD is a computer program that simulates inundation for rivers, flood plains and urban drainage systems. It dynamically couples 1D (MIKE 11 and

Regina is a suite of mathematical software for 3-manifold topologists. It focuses upon the study of 3-manifold triangulations and includes support for

Xplor-NIH is a highly sophisticated and flexible biomolecular structure determination program which includes an interface to the legacy X-PLOR program

Spectral modeling synthesis (SMS) is an acoustic modeling approach for speech and other signals. SMS considers sounds as a combination of harmonic content

Cinderella is a proprietary interactive geometry software, written in Java. Cinderella was initially developed by Jürgen Richter-Gebert and Henry Crapo

Gwyddion is a multiplatform modular free software for visualization and analysis of data from scanning probe microscopy (SPM) techniques (like AFM, MFM

The Dialogue-Assisted Visual Environment for Geoinformation (DAVE_G) is an interface to the GIS system that allows people to use gestures and voice commands

Opasnet is a web-workspace for making open assessments, which are impact assessments where anyone can freely participate and contribute. Opasnet is a wiki

Image Studio™ Lite is free image processing software used for quantitation of Western blot images and images from related experiments. As of 2021, Image

Virtual Cell (VCell) is an open-source software platform for modeling and simulation of living organisms, primarily cells. It has been designed to be a

In computer science, software pipelining is a technique used to optimize loops, in a manner that parallels hardware pipelining. Software pipelining is

WeBWorK is an online homework delivery system primarily used for mathematics and science. It allows students to complete their homework over the web, and

NinJo is a meteorological software system. It is a community project of the German Weather Service, the Meteorological Service of Canada, the Danish Meteorological

ViEWER, the Virtual Environment Workbench for Education and Research, is a proprietary, freeware computer program for Microsoft Windows written by researchers

GMS (Groundwater Modeling System) is water modeling application for building and simulating groundwater models from Aquaveo. It features 2D and 3D geostatistics

Montage is a software toolkit used in astrophotography to assemble astronomical images in Flexible Image Transport System (FITS) format into composite

Tanagra is a free suite of machine learning software for research and academic purposes developed by Ricco Rakotomalala at the Lumière University Lyon

The Dynix Automated Library System was a popular integrated library system, with a heyday from the mid-1980s to the late-1990s. It was used by libraries

GENtle is a free software under GPL license. GENtle is an equivalent to the proprietary Vector NTI, a tool for molecular biologists to analyze and edit

In computer science, software transactional memory (STM) is a concurrency control mechanism analogous to database transactions for controlling access

taveRNA is a software suite for RNA/DNA secondary structure. It is developed in the laboratories for computational biology of the School of Computing Science

CIP-Tool (Communicating Interacting Processes) is a software tool for the modelling and implementation of event-driven applications. It is especially relevant

Grome is an environmental modeling package developed by Quad Software dedicated for procedural and manual generation of large virtual outdoor worlds suitable

Einstein@Home is a volunteer computing project that searches for signals from spinning neutron stars in data from gravitational-wave detectors, from large

EAS3 (EAS = Ein-Ausgabe-System) is a software toolkit for reading and writing structured binary data with geometry information and for postprocessing of

professional development in fields such as liberal arts, education, library science, software engineering, area studies, data science, public policy, and management

Symbolic Analysis Program for Windows (SAPWIN) is a proprietary symbolic circuit simulator written in C++ for the Microsoft Windows operating systems Vista

Free and open-source software portal Unipept is an open source research tool for biodiversity analysis of metaproteomics samples. It also contains a tool

OpenMS is an open-source project for data analysis and processing in mass spectrometry and is released under the 3-clause BSD licence. It supports most

Ambient Weather is an Arizona based weather station and software manufacturer that specializes in customized products for the home and office, industry

Montage is a software toolkit used in astrophotography to assemble astronomical images in Flexible Image Transport System (FITS) format into composite

TREE-PUZZLE is a computer program used to construct phylogenetic trees from sequence data by maximum likelihood analysis. Branch lengths can be calculated

ParaSurf is a molecular modelling system using semi-empirical orbital programs to construct molecular surfaces and calculate local properties and descriptors

GENtle is a free software under GPL license. GENtle is an equivalent to the proprietary Vector NTI, a tool for molecular biologists to analyze and edit

MathMagic is a mathematical WYSIWYG equation editor. In June 2012, "MathMagic Lite Edition" was introduced for macOS platforms, with some limited features

PMB is a fully featured open source integrated library system. It is continuously developed and maintained by the French company PMB Services. PMB follows

The Space Telescope Science Data Analysis System (STSDAS) is an IRAF-based suite of astronomical software for reducing and analyzing astronomical data

Distributed Evolutionary Algorithms in Python (DEAP) is an evolutionary computation framework for rapid prototyping and testing of ideas. It incorporates

CORSIKA (COsmic Ray SImulations for KAscade) is a physics computer software for simulation of extensive air showers induced by high energy cosmic rays

taveRNA is a software suite for RNA/DNA secondary structure. It is developed in the laboratories for computational biology of the School of Computing Science

GenMAPP (Gene Map Annotator and Pathway Profiler) is a free, open-source bioinformatics software tool designed to visualize and analyze genomic data in

Quantian OS was a remastering of Knoppix/Debian for computational sciences. The environment was self-configuring and directly bootable CD/DVD that turns

Arlequin is a free population genetics software distributed as an integrated GUI data analysis software. It performs several types of tests and calculations

Grassroots DICOM or GDCM (originally called GNU DiCoM; the name was changed at a request for integration in ITK, followed by a change in license), is a

MyCoRe (portmanteau of My Content Repository) is an open source repository software framework for building disciplinary or institutional repositories,

Linguistic Knowledge Builder (LKB) is a free and open source grammar engineering environment for creating grammars and lexicons of natural languages. Any

Empire is a computer software for semiempirical Molecular Orbital calculations designed to run in parallel on multi-core desktop computers and on massively

AnimatLab is an open-source neuromechanical simulation tool that allows authors to easily build and test biomechanical models and the neural networks that

high-level programmes in an extensive range of fields, from Computer Science - Software engineering, Electrical engineering to Meteorology engineering and

QuickField is a finite element analysis software package running on Windows platforms. It is developed by the Danish company Tera Analysis Ltd. in cooperation

TRAMO ("Time Series Regression with ARIMA Noise, Missing Observations and Outliers") (Gómez y Maravall, 1996) is a program for estimation, forecasting

The OpenMS Proteomics Pipeline (TOPP) is a set of computational tools that can be chained together to tailor problem-specific analysis pipelines for HPLC-MS

HTK (Hidden Markov Model Toolkit) is a proprietary software toolkit for handling HMMs. It is mainly intended for speech recognition, but has been used

PWPAW A Projector Augmented Wave (PAW) code for electronic structure calculation. It is a free software package, distributed under the copyleft GNU General

PASS is a computer program for estimating sample size or determining the power of a statistical test or confidence interval. NCSS LLC is the company that

The GNU Data Language (GDL) is a free alternative to IDL (Interactive Data Language), achieving full compatibility with IDL 7 and partial compatibility

WAsP (Wind Atlas Analysis and Application Program) is a Windows program for predicting wind climates, wind resources, and energy yields from wind turbines

SCP-ISM, or screened Coulomb potentials implicit solvent model, is a continuum approximation of solvent effects for use in computer simulations of biological

IMOD is an open-source, cross-platform suite of modeling, display and image processing programs used for 3D reconstruction and modeling of microscopy images

A CFD-DEM model is suitable for the modeling or simulation of fluid-solids or fluid-particles systems. In a typical CFD-DEM model, the phase motion of

MELCOR is a fully integrated, engineering-level computer code developed by Sandia National Laboratories for the U.S. Nuclear Regulatory Commission to model

WXP, the Weather Processor, is a weather data manipulation and visualization package developed at Purdue University in the 1980s. In 1989, WXP was adopted

Engineering Equation Solver (EES) is a commercial software package used for solution of systems of simultaneous non-linear equations. It provides many

numerical-analysis software, machine learning software, list of open-source data science software. Computational science - computational physics, chemistry, biology

MT3D is a family of finite-difference groundwater mass transport modeling software, often used with MODFLOW. The first generation, MT3D, was developed

The Library Corporation (TLC) creates and distributes automation and cataloging software to public, school, academic, and special library systems worldwide

This is a list of free and open-source software for geological data handling and interpretation. The list is split into broad categories, depending on

Automated Anatomical Labeling (AAL) (or Anatomical Automatic Labeling) is a software package and digital atlas of the human brain. It is typically used

Bodyworks Voyager is an educational first-person shooter for MS-DOS released in 1994. It was developed by Mythos Software and published by Software Marketing

Xgraph is the name of at least two applications for 2-D interactive plotting, graphing and animation. In 1984, Carl Hein of Lockheed Martin Advanced Technology

Winmostar is a molecular modelling and visualisation software program that computes quantum chemistry, molecular dynamics, and solid physics. 2001 Winmostar

CLHEP (short for A Class Library for High Energy Physics) is a C++ library that provides utility classes for general numerical programming, vector arithmetic

Generalized Environmental Modeling System for Surfacewaters or GEMSS is a public domain software application published by ERM. It has been used for hydrological

Sysquake is a numerical computing environment and a programming language mostly-compatible with MATLAB. It offers facilities for interactive graphics which

Xgraph is the name of at least two applications for 2-D interactive plotting, graphing and animation. In 1984, Carl Hein of Lockheed Martin Advanced Technology

github.com/projectblacklight/blacklight Written in Ruby Type Library and information science software License Apache License Website projectblacklight.org

MaxIm DL is a software package developed by Diffraction Limited and sold under the Cyanogen Imaging brand. It is used for acquisition, processing, and

The Simulated Fluorescence Process (SFP) is a computing algorithm used for scientific visualization of 3D data from, for example, fluorescence microscopes

JUICE is a non-commercial software package for editing and analysing phytosociological data. It was developed at the Masaryk University in Brno, Czech

Kekulé was a computer program named after the chemist Friedrich August Kekulé von Stradonitz. The program was created starting in about 1990 by Joe McDaniel

Synopsys Simpleware ScanIP is a 3D image processing and model generation software program developed by Synopsys Inc. to visualise, analyse, quantify, segment

The FDMNES program calculates the spectra of different spectroscopies related to the real or virtual absorption of x-ray in material. It gives the absorption

Nightshade is a simulation and visualization software for teaching and exploring astronomy, Earth science, and related topics. Its focus is on use in digital

TracePro is a commercial optical engineering software program for designing and analyzing optical and illumination systems. The program's graphical user

CoNTub is a software project written in Java which runs on Windows, Mac OS X, Linux and Unix Operating systems through any Java-enabled web browser. It

CompHEP is a software package for automatic computations in high energy physics from Lagrangians to collision events or particle decays. CompHEP is based

Goobi (Abbr. of Göttingen online-objects binaries) is an open-source software suite intended to support mass digitisation projects for cultural heritage

Avizo (pronounce: ‘a-VEE-zo’) is a general-purpose commercial software application for scientific and industrial data visualization and analysis. Avizo

Free and open-source software portal NewGenLib is an integrated library management system developed by Verus Solutions Pvt Ltd. Domain expertise is provided

The Advanced Continuous Simulation Language, or ACSL (pronounced "axle"), is a computer language designed for modeling and evaluating the performance of

The Multidimensional hierarchical toolkit or Multi-Dimensional and Hierarchical (MDH) Database Toolkit is a Linux-based, open-sourced, toolkit of portable

Madagascar is a software package for multidimensional data analysis and reproducible computational experiments. Technology developed using the Madagascar

The Spatiotemporal Epidemiological Modeler (STEM) is free software available through the Eclipse Foundation. Originally developed by IBM Research, STEM

Solarsoft is a collaborative software development system created at Lockheed-Martin to support solar data analysis and spacecraft operation activities

In bioinformatics, LIGPLOT is a computer program that generates schematic 2-D representations of protein-ligand complexes from standard Protein Data Bank

MoFEM (Mesh Orientated Finite Element Method) is an open source finite element analysis code developed and maintained at the University of Glasgow. MoFEM

CYANA (combined assignment and dynamics algorithm for NMR applications) is a program for automated structure calculation of biological macromolecules on

PSI Protein Classifier is a program generalizing the results of both successive and independent iterations of the PSI-BLAST program. PSI Protein Classifier

MeVisLab is a cross-platform application framework for medical image processing and scientific visualization. It includes advanced algorithms for image

Framsticks is a 3D freeware Artificial Life simulator. Organisms consisting of physical structures ("bodies") and control structures ("brains") evolve

Rule-based modeling is a modeling approach that uses a set of rules that indirectly specifies a mathematical model. The rule-set can either be translated

Fathom Dynamic Data Software is software for learning and teaching statistics, at the high school and introductory college level. Technology & Learning

Vaa3D (in Chinese ‘挖三维’) is an Open Source visualization and analysis software suite created mainly by Hanchuan Peng and his team at Janelia Research Campus

mothur is an open source software package for bioinformatics data processing. The package is frequently used in the analysis of DNA from uncultured microbes

nQuery is a clinical trial design platform used for the design and monitoring of adaptive, group sequential, and fixed sample size trials. It is most commonly

The MEME suite is a collection of tools for the discovery and analysis of sequence motifs. It was developed by Timothy Bailey in the Department of Pharmacology

X-Ray is a reference tool, introduced in September 2011, that is incorporated in the Amazon Kindle Touch and later models, Kindle apps for mobile platforms

NMR-STAR is an extension of the STAR file format to store the results of biological NMR experiments. v t e

PeakFit is an automated nonlinear peak separation and analysis software package for scientists performing spectroscopy, chromatography and electrophoresis

SciCast is a collaborative platform for science and technology forecasting created by George Mason University with the help of a grant from the Intelligence

The LONI Pipeline is a free distributed system for designing, executing, monitoring and sharing scientific workflows on grid computing architectures. Pipeline

Weather Underground / HeavyWeather Uploader, commonly WUHU, is a free software package for Microsoft Windows which allows users with Personal Weather Stations

NMRPipe is a Nuclear Magnetic Resonance data processing program. The project was preceded by other functionally similar programs but is, by and large,

VAPOR (Visualization and Analysis Platform for Ocean, Atmosphere, and Solar Researchers) is a software package developed at the National Center for Atmospheric

Linux Platform Cross-platform Available in English Type Library and information science software License Freeware Website http://marcedit.reeset.net/

HOBBIES is a general purpose electromagnetic solver for various applications. The name is an acronym for Higher Order Basis Based Integral Equation Solver

CPCe (Coral Point Count with Excel extensions) is Windows-based software that provides a tool for the determination of coral cover using transect photographs

Adept is a combined automatic differentiation and array software library for the C++ programming language. The automatic differentiation capability facilitates

Gravit is a free and open-source gravity simulator distributed under the GNU General Public License. The program is available for all major operating systems

MassMatrix is a mass spectrometry data analysis software that uses a statistical model to achieve increased mass accuracy over other database search algorithms

The Distributed Oceanographic Data Systems, or DODS, is a type of server that allows sharing data with remote users or between DODS servers. It is developed

CPCe (Coral Point Count with Excel extensions) is Windows-based software that provides a tool for the determination of coral cover using transect photographs

LibSBML is an open-source software library that provides an application programming interface (API) for the SBML (Systems Biology Markup Language ) format

PolyAnalyst is a data science software platform developed by Megaputer Intelligence that provides an environment for text mining, data mining, machine

The Theorem Proving System (TPS) is an automated theorem proving system for first-order and higher-order logic. TPS has been developed at Carnegie Mellon

ENVI-met is a microscale three-dimensional software model for simulating complex urban environments based on the fundamental laws of fluid mechanics (wind

WordMARC Composer was a scientifically oriented word processor developed by MARC Software, an offshoot of MARC Analysis Research Corporation (which specialized

ESyPred3D is an automated homology modeling program. Alignments are obtained by combining, weighting and screening the results of several multiple alignment

Pydlpoly is a molecular dynamics simulation package which is a modified version of DL-POLY with a Python language interface. Pydlpoly is written by Rochus

Gaia Sky is an open-source astronomy visualisation desktop and VR program with versions for Windows, Linux and macOS. It is created and developed by Toni

The Climate Data Exchange (CDX) is a JPL software framework, built on the Apache Object Oriented Data Technology (OODT) software, for sharing climate data

The Climate Data Analysis Tool (CDAT) is plotting software used in atmospheric sciences and climatology. CDAT is a software used in atmospheric sciences

Jemris is an open source MRI sequence design and simulation framework written in C++. It was designed to most generally and numerically integrate the Bloch

MovAlyzeR is a software package for handwriting movement analysis for research and professional applications. Handwriting movements are recorded using

The AIR (Automated Image Registration) is a program suite for volume-based image registration constructed by Roger P. Woods from UCLA School of Medicine

SPEED2000 is a software package designed for electromagnetic simulation for the analysis and design of high-speed electronic systems. It combines an electromagnetic

Capgemini Ernst and Young) which aimed to commercialize complexity science software in applications that helped companies manage projects and supply chains

Accreditation Council (ISTAC) to accredit baccalaureate programs in Computer Science, Software Engineering, Management Information Systems, Computer Systems Technology

Synthetic Organism Designer is a piece of software created by Craig Venter's team for designing organisms. http://www.edge.org/3rd_culture/church_vent

MNE-Python ("MNE") is an open source toolbox for EEG and MEG signal processing. It is written in Python and is available from the PyPI package repository

TetGen is a mesh generator developed by Hang Si which is designed to partition any 3D geometry into tetrahedrons by employing a form of Delaunay triangulation

UrQMD (Ultra relativistic Quantum Molecular Dynamics) is a fully integrated Monte Carlo simulation package for Proton+Proton, Proton+nucleus and nucleus+nucleus

Deep-Sky Planner is observation planning and logging software for amateur astronomers. It helps observers to determine where and when to view all types

Streamer is a radiative transfer code (Key and Schweiger, 1988) to calculate radiances (intensities) or irradiances in the atmosphere. The code uses N-stream

WAMIT is a computer program for computing wave loads and motions of offshore structures in waves. It is based on the linear and second-order potential

Automated Weather Source (AWS) was a partnership and later a corporation founded in 1992 by James Michael "Mike" Bailey and Charles "Topper" Shutt of Montgomery

ARTS (Atmospheric Radiative Transfer Simulator) is a widely used atmospheric radiative transfer simulator for infrared, microwave, and sub-millimeter wavelengths

1000minds is a web application for decision-making and conjoint analysis supplied by 1000minds Ltd since 2003. 1000minds implements the PAPRIKA method

ToFeT is a kinetic Monte Carlo electronic model of molecular films, able to simulate the time-of-flight experiment (ToF), field-effect transistors (FeTs)

Bellerophon is a computer program for detecting chimeric sequences in multiple sequence datasets by an adaptation of partial treeing analysis. Bellerophon

Qoca is a GPL library for incrementally solving systems of linear equations with various goal functions. It contains a robust implementation of Cassowary

Crucible is a geodemography computer system created by the United Kingdom-based grocery company Tesco. The system is run by a subsidiary Dunnhumby. The

The Modular Chemical Descriptor Language (MCDL) is a method for representing of molecular structures and pertinent molecular information using linear descriptors

Personal environmental impact accounting (PEIA) is a computer software-based methodology developed in 1992 by Don Lotter for quantifying an individual's

Systrip is a visual environment for the analysis of time-series data in the context of biological networks. Systrip gathers bioinformatics and graph theoretical

technology GIS software LIS software Bibliometrics Reference management Science software Qualitative data analysis Simulation Statistics Philosophy portal v

The Molecular Modelling Toolkit (MMTK) is an open-source software package written in Python, which performs common tasks in molecular modelling. The Molecular

The Decision Support System for Agrotechnology Transfer (DSSAT) is a set of computer programs for simulating agricultural crop growth. It has been used

Alt-Ergo, an automatic solver for mathematical formulas, is mainly used in formal program verification. It operates on the principle of satisfiability

Mesohabitat simulation model (MesoHABSIM), created by Dr. Piotr Parasiewicz, addresses the requirements of watershed-based management of running waters

Graphmatica is a graphing program created by Keith Hertzer, a graduate of the University of California, Berkeley. It runs on Microsoft Windows (all versions)

EXMARaLDA (Extensible Markup Language for Discourse Annotation) is a set of free software tools for creating, managing and analyzing spoken language corpora

Systems biology relies heavily on building mathematical models to help understand and make predictions of biological processes. Specialized software to

CitCom (for California Institute of Technology Convection in the Mantle) is a finite element code designed to solve thermal convection problems relevant

EcoDrive is free software codeveloped by Microsoft and Fiat. It was unveiled at the 2008 Paris Motor Show, and its aim was to allow drivers to reduce their

TracenPoche (TeP) is a free interactive geometry software, written in Adobe Flash language. It is very light weight. It is widely used in French secondary

EMIGMA is a geophysics interpretation software platform developed by Petros Eikon Incorporated for data processing, simulation, inversion and imaging as

OctaDist is computer software for crystallography and inorganic chemistry program. It is mainly used for computing distortion parameters of coordination

MODFLOW is the U.S. Geological Survey modular finite-difference flow model, which is a computer code that solves the groundwater flow equation. The program

PSF Lab is a software program that allows the calculation of the illumination point spread function (PSF) of a confocal microscope under various imaging

MassLynx is a software package to control analytical equipment produced by Waters Corporation including liquid chromatography systems such as the ACQUITY