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searching for Ribosome-binding site 44 found (73 total)

Alpha operon ribosome binding site (117 words) [view diff] no match in snippet view article find links to article

The alpha operon ribosome binding site in bacteria is surrounded by this complex pseudoknotted RNA structure. Translation of the mRNA produces 4 ribosomal

Repression of heat shock gene expression (ROSE) element (580 words) [view diff] no match in snippet view article

access to the ribosome binding site at normal temperatures. During heat shock however, the structure changes freeing the ribosome binding site and allowing

SerC leader (97 words) [view diff] no match in snippet view article find links to article

alpha-proteobacteria. The final stem of the structure overlaps the ribosome binding site of the serC reading frame. Corbino KA, Barrick JE, Lim J, Welz R

CtRNA (203 words) [view diff] no match in snippet view article find links to article

copA/repB intergenic region and partially overlaps an atypical ribosome binding site for repB. S-element Venkova-Canova, T; Patek M; Nesvera J (2003)

SucA RNA motif (181 words) [view diff] no match in snippet view article find links to article

gene association and a possible mechanism for sequestering the ribosome binding site, it was proposed that the sucA RNA motif corresponds to a cis-regulatory

MsiK RNA motif (263 words) [view diff] exact match in snippet view article find links to article

ribosome-binding site) overlaps a part of the msiK RNA. If msiK RNAs are cis-regulatory elements, they likely function by sequestering the ribosome-binding

Lig RNA thermometer (191 words) [view diff] exact match in snippet view article find links to article

RNA structures because they occludes the ribosome-binding site. At higher temperatures, the ribosome binding site is exposed to promote translation initiation

SroB RNA (514 words) [view diff] no match in snippet view article find links to article

negatively regulates the outer membrane protein YbfM by sequestering the ribosome binding site of ybfM mRNA by an antisense interaction. SroB also regulates the

SAM–SAH riboswitch (420 words) [view diff] exact match in snippet view article find links to article

SAM–SAH riboswitches includes a predicted Shine-Dalgarno sequence (ribosome-binding site) of the downstream metK genes. These nucleotides are required for

GabT RNA motif (448 words) [view diff] exact match in snippet view article find links to article

regulate the upstream gene. The predicted Shine-Dalgarno sequence (ribosome-binding site) is contained within the stem-loop called "P2" in some gabT RNAs

RpoS mRNA 5′UTR (337 words) [view diff] no match in snippet view article find links to article

binding in the 5′UTR and causes the stem loop to open, exposing the ribosome binding site. Site-directed mutagenesis and deletion analysis located an AAYAA

S-SodF RNA (434 words) [view diff] no match in snippet view article find links to article

a sequence complementary to sodN mRNA from the 5′-end up to the ribosome binding site. It pairs with sodN mRNA, blocks its translation and facilitates

Neisseria RNA thermometer (404 words) [view diff] no match in snippet view article find links to article

temperature opens up the structure to allow increased access to the ribosome binding site. In addition even a small changes in nucleotide composition lead

FasX small RNA (553 words) [view diff] exact match in snippet view article find links to article

translation of the pilus biosynthesis operon mRNA by occluding the ribosome-binding site through a simple Watson-Crick base-pairing mechanism. Bacterial

FMN riboswitch (873 words) [view diff] exact match in snippet view article find links to article

untranslated region of the ribDEAHT operon, precluding access to the ribosome-binding site of ypaA mRNA. FMN riboswitches also have various magnesium and potassium

Synechocystis sp. PCC 6803 (3,535 words) [view diff] no match in snippet view article find links to article

waste contaminated with heavy metals, increasing disposal costs The ribosome binding site (RBS) is the location where a ribosome binds a strand of mRNA and

Expression cloning (225 words) [view diff] no match in snippet view article find links to article

proteins. To this end, a bacterial expression clone may include a ribosome binding site (Shine-Dalgarno sequence) to enhance translation of the gene of

Toeprinting assay (312 words) [view diff] no match in snippet view article find links to article

by formation of a long-range secondary structure involving the ribosome binding site and the internal complementary sequence". Journal of Bacteriology

PreQ1-III riboswitch (241 words) [view diff] exact match in snippet view article find links to article

a class III preQ1 riboswitch reveals an aptamer distant from a ribosome-binding site regulated by fast dynamics". Proc. Natl. Acad. Sci. USA. 112 (27):

MicA RNA (904 words) [view diff] no match in snippet view article find links to article

It is known to target the OmpA gene in E. coli and occludes the ribosome binding site. Under conditions of envelope stress, micA transcription is induced

Riboswitch (3,887 words) [view diff] exact match in snippet view article find links to article

transcription termination. Riboswitch-mediated folding sequesters the ribosome-binding site, thereby inhibiting translation. The riboswitch is a ribozyme that

Mengovirus (551 words) [view diff] no match in snippet view article find links to article

large un-translated region at the 5’ end of the RNA that has a ribosome binding site, removing the need of a cap. A single polypeptide is made and is

Small protein (707 words) [view diff] no match in snippet view article find links to article

take into account multiple parameters, such as the presence of a ribosome binding site and amino acid conservation. RNA sequencing or mass spectrometric

List of cis-regulatory RNA elements (553 words) [view diff] no match in snippet view article find links to article

(CPB) RNA Alfalfa mosaic virus RNA 1 5′ UTR stem-loop Alpha operon ribosome binding site Antizyme RNA frameshifting stimulation element APC internal ribosome

Ribosomal protein (1,929 words) [view diff] no match in snippet view article find links to article

bacteria (+organelle); A = archaea; E = eukarya cytoplasm Alpha operon ribosome binding site Ribosomal protein L20 leader Mitochondrial ribosome, for a list

TisB-IstR toxin-antitoxin system (1,090 words) [view diff] no match in snippet view article find links to article

loading/standby site in an unstructured region >80 nt upstream of the tisB ribosome binding site, thus allowing translation of the TisB protein. This standby site

Lynn Dalgarno (1,307 words) [view diff] no match in snippet view article find links to article

purine-rich section (known as the Shine-Dalgarno sequence) of the ribosome binding site of messenger RNA. — Fyfe Bygrave Shine, John; Dalgarno, Lynn (1975)

P-site (1,528 words) [view diff] no match in snippet view article find links to article

Ribosome binding site

Gisela Storz (792 words) [view diff] no match in snippet view article find links to article

(2008) Small membrane proteins found by comparative genomics and ribosome binding site models. Mol. Microbiol. 70, 1487-1501. Zhang, A., Wassarman, K.

GeneMark (1,484 words) [view diff] no match in snippet view article find links to article

interpreted as transitions between hidden states. Additionally, the ribosome binding site model was added to the GHMM model to improve accuracy of gene start

Central dogma of molecular biology (2,983 words) [view diff] no match in snippet view article find links to article

(adenine−uracil−guanine), or initiator methionine codon downstream of the ribosome binding site. Complexes of initiation factors and elongation factors bring aminoacylated

GLIMMER (2,898 words) [view diff] no match in snippet view article find links to article

'Identifying bacterial genes and endosymbiont DNA with Glimmer' Ribosome binding site(RBS) signal can be used to find true start site position. GLIMMER

Scarlet fever (6,433 words) [view diff] no match in snippet view article find links to article

weight of 25.787 kDa for the secreted protein. Both a promoter and a ribosome binding site (Shine-Dalgarno sequence) are present upstream of the gene. A transcriptional

Listeria (6,110 words) [view diff] no match in snippet view article find links to article

transcript is not translated due to structural elements near the ribosome binding site. As the bacteria infect the host, the temperature of the host denatures

Cobalamin riboswitch (2,350 words) [view diff] no match in snippet view article find links to article

unbound conformation has an unstructured interaction between the ribosome binding site (RBS) and the blue and green segments. This unstructured interaction

Type VI secretion system (2,626 words) [view diff] exact match in snippet view article find links to article

RsmA is a translational inhibitor that binds to sequences near the ribosome-binding site for T6SS gene expression. This level of regulation has also been

Hepatitis C virus (6,585 words) [view diff] no match in snippet view article find links to article

translation and replication of the viral RNA. The 5′ UTR has a ribosome binding site or internal ribosome entry site (IRES) that initiates the translation

Escherichia virus T4 (5,369 words) [view diff] no match in snippet view article find links to article

"Non-canonical RNA arrangement in T4-even phages: accommodated ribosome binding site at the gene 26-25 intercistronic junction". Mol Microbiol. 73 (6):

Gene regulatory network (6,092 words) [view diff] no match in snippet view article find links to article

single-step reaction (RNAP is the RNA polymerase, RBS is the RNA ribosome binding site, and Pro i is the promoter region of gene i): RNAP + Pro i ⟶ k i

Codon usage bias (3,178 words) [view diff] exact match in snippet view article find links to article

selective pressures. In particular, strong secondary structure at the ribosome-binding site or initiation codon can inhibit translation, and mRNA folding at

C20orf27 (3,092 words) [view diff] no match in snippet view article find links to article

C20orf27. Labeled are start and stop codons, exon spliced regions, polyadrenylation signals, and ribosome binding site. Bold are conserved amino acids.

Planted motif search (4,694 words) [view diff] no match in snippet view article find links to article

for finding short motifs in sequences, with application to the ribosome binding site problem". Proc Int Conf Intell Syst Mol Biol: 262–271. PMID 10786309

Micropeptide (3,886 words) [view diff] no match in snippet view article find links to article

2008). "Small membrane proteins found by comparative genomics and ribosome binding site models". Molecular Microbiology. 70 (6): 1487–501. doi:10.1111/j

Synthetic biology (18,308 words) [view diff] no match in snippet view article find links to article

Shakespeare in DNA. More generally, algorithms such as NUPACK, ViennaRNA, Ribosome Binding Site Calculator, Cello, and Non-Repetitive Parts Calculator enables the