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searching for Pyrosequencing 71 found (129 total)

Mothur (317 words) [view diff] exact match in snippet view article find links to article

processing data generated from several DNA sequencing methods including 454 pyrosequencing, Illumina HiSeq and MiSeq, Sanger, PacBio, and IonTorrent. The first

Avian bornavirus (1,015 words) [view diff] exact match in snippet view article find links to article

In 2008, by pyrosequencing of cDNA from the brains of several parrots suffering from proventricular dilatation disease (PDD), Honkavuori et al. identified

Haemadipsa interrupta (214 words) [view diff] exact match in snippet view article find links to article

Kvist, S.; Brugler, M.; Goh, T.; Giribet, G.; Siddall, M. (2014). "Pyrosequencing the salivary transcriptome of Haemadipsa interrupta (Annelida: Clitellata:

DNA barcoding (11,132 words) [view diff] exact match in snippet view article find links to article

herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures". Frontiers

Syndinium (975 words) [view diff] exact match in snippet view article find links to article

Fleischer, RC., Carney, KJ., Holzer, KK., Ruiz, Gm. 2016: Amplicon-Based Pyrosequencing Reveals High Diversity of Protistan Parasites in Ships' Ballast Water:

Liming (soil) (1,025 words) [view diff] exact match in snippet view article

"Microbial Response to Soil Liming of Damaged Ecosystems Revealed by Pyrosequencing and Phospholipid Fatty Acid Analyses". PLOS ONE. 12 (1): e0168497. doi:10

DNA barcoding in diet assessment (3,011 words) [view diff] exact match in snippet view article find links to article

herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures". Frontiers

Lactobacillus kefiranofaciens (1,276 words) [view diff] exact match in snippet view article find links to article

home-made yoghurts of Xinjiang, China by pyrosequencing: Microbial diversity in home-made yoghurts by pyrosequencing". Journal of the Science of Food and

Scaffolding (bioinformatics) (1,368 words) [view diff] exact match in snippet view article

Goldberg et al. evaluated the effectiveness of combining high throughput pyrosequencing with traditional Sanger sequencing. They were able to greatly increase

Sphingomonadaceae (1,199 words) [view diff] exact match in snippet view article find links to article

"Exploring bacterial diversity in hospital environments by GS-FLX Titanium pyrosequencing". PLOS ONE. 7 (8): e44105. Bibcode:2012PLoSO...744105P. doi:10.1371/journal

Simian hemorrhagic fever virus (478 words) [view diff] exact match in snippet view article find links to article

Viruses in a Wild Ugandan Red Colobus Monkey Discovered Using Direct Pyrosequencing". PLOS ONE. 6 (4): e19056. Bibcode:2011PLoSO...619056L. doi:10.1371/journal

Syntrophococcus sucromutans (1,304 words) [view diff] exact match in snippet view article find links to article

The foregut community samples were then sequenced via 454-amplicon pyrosequencing. After sequencing, the 16S rRNA gene and its V3/V4 region were specifically

Leptothrix ochracea (112 words) [view diff] exact match in snippet view article find links to article

Resolving the identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH". PLOS ONE. 6 (3): e17769. Bibcode:2011PLoSO...617769F. doi:10

RpoB (1,278 words) [view diff] exact match in snippet view article find links to article

Kowalchuk GA (2012). "A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity". PLOS ONE. 7 (2): e30600. Bibcode:2012PLoSO

Dyadobacter (556 words) [view diff] exact match in snippet view article find links to article

Syst Evol Microbiol 56(Pt 8): 1939-1944 Manter, D. K., et al. (2010). "Pyrosequencing Reveals a Highly Diverse and Cultivar-Specific Bacterial Endophyte Community

Acidobacteriota (2,654 words) [view diff] exact match in snippet view article find links to article

(2009-01-08). "A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses". The ISME Journal. 3 (4): 442–453. Bibcode:2009ISMEJ

UniFrac (760 words) [view diff] exact match in snippet view article find links to article

phylogenetic analyses of microbial communities including analysis of pyrosequencing and Phylo Chip data". The ISME Journal. 4 (1): 17–27. doi:10.1038/ismej

Molecular ecology (6,856 words) [view diff] exact match in snippet view article find links to article

ISBN 978-0-470-01590-2. Lauber CL, Hamady M, Knight R, Fierer N (August 2009). "Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community

Internal transcribed spacer (2,215 words) [view diff] exact match in snippet view article find links to article

Luo, Hongmei; Pang, Xiaohui; Sun, Zhiying (2012-08-30). "Extensive Pyrosequencing Reveals Frequent Intra-Genomic Variations of Internal Transcribed Spacer

Catherine A. Lozupone (832 words) [view diff] exact match in snippet view article find links to article

phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data". The ISME Journal. 4 (1). London, England: Nature

Operational taxonomic unit (797 words) [view diff] exact match in snippet view article find links to article

H.; Hugenholtz, P. (January 2010). "Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates". Environ

Rhodotorula (1,272 words) [view diff] exact match in snippet view article find links to article

in water supply reservoirs are revealed by quantitative PCR and 454 pyrosequencing". BMC Microbiology. 15: 44. doi:10.1186/s12866-015-0379-7. PMC 4349462

Methylated-DNA-protein-cysteine methyltransferase (3,857 words) [view diff] exact match in snippet view article find links to article

such as methylation-specific polymerase chain reaction (MS-PCR) or pyrosequencing are preferred over immunohistochemical or RNA- based assays. In patients

Anaerococcus lactolyticus (206 words) [view diff] exact match in snippet view article find links to article

Biofilm Infections Determined Using Bacterial Tag Encoded FLX Amplicon Pyrosequencing (bTEFAP)". PLOS ONE. 3 (10): e3326. Bibcode:2008PLoSO...3.3326D. doi:10

Jonathan J. Juliano (987 words) [view diff] exact match in snippet view article find links to article

population diversity by capture-recapture using massively parallel pyrosequencing". Proceedings of the National Academy of Sciences of the United States

Angelman syndrome (4,152 words) [view diff] exact match in snippet view article find links to article

"Quantitative analysis of SNRPN(correction of SRNPN) gene methylation by pyrosequencing as a diagnostic test for Prader–Willi syndrome and Angelman syndrome"

Cytoglobin (1,486 words) [view diff] exact match in snippet view article find links to article

cyclin A1 and cytoglobin in oral cancer: quantitative evaluation using pyrosequencing". British Journal of Cancer. 94 (4): 561–8. doi:10.1038/sj.bjc.6602972

Neil Hall (374 words) [view diff] exact match in snippet view article find links to article

1151 (joint) "Accurate determination of microbial diversity from 454 pyrosequencing data", Nature Methods, 6 (9), 639-641 (joint) Smith, Stevie (27 November

Chemical waste (2,957 words) [view diff] exact match in snippet view article find links to article

Hanna; Larsson, D. G. Joakim (2011). Rodriguez-Valera, Francisco (ed.). "Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance

Small nuclear ribonucleoprotein polypeptide N (1,220 words) [view diff] exact match in snippet view article find links to article

"Quantitative analysis of SNRPN(correction of SRNPN) gene methylation by pyrosequencing as a diagnostic test for Prader-Willi syndrome and Angelman syndrome"

Mealworm (4,510 words) [view diff] exact match in snippet view article find links to article

reduction in the bacterial community size, which was determined with pyrosequencing of the 16S rRNA gene, and no negative relationship when kanamycin was

Chinampa (2,926 words) [view diff] exact match in snippet view article find links to article

Wang, En Tao (2 October 2015). "Bacterial communities estimated by pyrosequencing in the soils of chinampa, a traditional sustainable agro-ecosystem in

Erdheim–Chester disease (2,784 words) [view diff] exact match in snippet view article find links to article

cytoplasm does not disclose Birbeck granules. More sensitive methods like pyrosequencing or digital droplet polymerase chain reaction may be helpful if aforementioned

Mir-663 microRNA precursor family (1,400 words) [view diff] exact match in snippet view article find links to article

(January 2011). "Systematic cross-validation of 454 sequencing and pyrosequencing for the exact quantification of DNA methylation patterns with single

Dactylanthus taylorii (1,361 words) [view diff] exact match in snippet view article find links to article

root holoparasite Dactylanthus taylorii (Balanophoraceae) from 454 pyrosequencing". American Journal of Botany. 99 (8): e323 – e325. doi:10.3732/ajb.1200013

Antibiotic resistance in gonorrhea (1,703 words) [view diff] exact match in snippet view article find links to article

and Chemotherapy 1273–1280 Unemo (2008) Real-time PCR and subsequent pyrosequencing for screeing of penA mosaic alleles and prediction of reduced susceptibility

Artificial gene synthesis (7,073 words) [view diff] exact match in snippet view article find links to article

molecules. In one approach, oligonucleotides are sequenced on the 454 pyrosequencing platform and a robotic system images and picks individual beads corresponding

White rhinoceros (5,425 words) [view diff] exact match in snippet view article find links to article

the white rhinoceros (Ceratotherium simum) as determined by barcoded pyrosequencing analysis". PLOS ONE. 8 (7): e70103. Bibcode:2013PLoSO...870103B. doi:10

Rice stripe virus (830 words) [view diff] exact match in snippet view article find links to article

Zhou; Yijun Zhou; Shengyue Wang (13 May 2010). "Massively Parallel Pyrosequencing-based Transcriptome Analyses of Small Brown Planthopper (Laodelphax

Parasutterella (1,239 words) [view diff] exact match in snippet view article find links to article

host-specific fecal indicators in fecal and river water samples using pyrosequencing". The Journal of Microbiology. 49 (4): 585–94. doi:10.1007/s12275-011-0530-6

Soil pH (6,318 words) [view diff] exact match in snippet view article find links to article

Christian L.; Hamady, Micah; Knight, Rob; Fierer, Noah (August 2009). "Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community

Fibrolytic bacterium (1,324 words) [view diff] exact match in snippet view article find links to article

the small ribosomal subunit. Then each amplicon is sequenced with the pyrosequencing technique. Once we have the sequences they have to be compared and grouped

Plant microbiome (6,903 words) [view diff] exact match in snippet view article find links to article

Analysis of Bacterial Communities in a Potato Field as Determined by Pyrosequencing". PLOS ONE. 6 (8): e23321. Bibcode:2011PLoSO...623321I. doi:10.1371/journal

P16 (4,271 words) [view diff] exact match in snippet view article find links to article

cyclin A1 and cytoglobin in oral cancer: quantitative evaluation using pyrosequencing". British Journal of Cancer. 94 (4): 561–568. doi:10.1038/sj.bjc.6602972

Staphylococcus capitis (1,973 words) [view diff] exact match in snippet view article find links to article

genus that is positive for staph coagulase. Shotgun and paired-end pyrosequencing were one of the technique using to study the genome of S. capitis. Researchers

Tracy Teal (1,343 words) [view diff] exact match in snippet view article find links to article

(2010-04-01). "Identifying and Removing Artificial Replicates from 454 Pyrosequencing Data". Cold Spring Harbor Protocols. 2010 (4): pdb.prot5409. doi:10

Mycobiome (2,765 words) [view diff] exact match in snippet view article find links to article

diversity: comparing ARISA fingerprinting with clone sequencing and pyrosequencing". Fungal Ecology. 2 (4): 160–167. Bibcode:2009FunE....2..160G. doi:10

Center for Research and Development in Health Sciences (743 words) [view diff] exact match in snippet view article find links to article

The CIDICS has a laboratory infrastructure consisting of: A team of pyrosequencing and different platforms to comparative genomic hybridization studies

Ant (17,582 words) [view diff] exact match in snippet view article find links to article

CS (January 2013). "Surveying the microbiome of ants: comparing 454 pyrosequencing with traditional methods to uncover bacterial diversity". Applied and

BRAF (gene) (5,393 words) [view diff] exact match in snippet view article

Salto-Tellez M, et al. (April 2008). "Detection of BRAF V600E mutation by pyrosequencing". Pathology. 40 (3): 295–298. doi:10.1080/00313020801911512. PMID 18428050

Endozoicomonas gorgoniicola (1,108 words) [view diff] exact match in snippet view article find links to article

Huete-Stauffer, Carla; Pruzzo, Carla; Cerrano, Carlo (26 June 2013). "16SrDNA Pyrosequencing of the Mediterranean Gorgonian Paramuricea clavata Reveals a Link among

Corrie Moreau (1,539 words) [view diff] exact match in snippet view article find links to article

(November 2013). "Surveying the microbiome of ants: Comparing 454 pyrosequencing with traditional methods to uncover bacterial diversity". Applied and

Rufous grasshopper (2,560 words) [view diff] exact match in snippet view article find links to article

"New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach". Molecular Ecology Resources. 9 (1): 51–60. doi:10

Soil formation (9,833 words) [view diff] exact match in snippet view article find links to article

Camargo, Flavio A.O.; Farmerie, William G.; Triplett, Eric W. (2007). "Pyrosequencing enumerates and contrasts soil microbial diversity". The ISME Journal

Linezolid (10,601 words) [view diff] exact match in snippet view article find links to article

two vancomycin-resistant (VanB) Enterococcus faecium isolates using Pyrosequencing". European Journal of Clinical Microbiology & Infectious Diseases. 27

Transmission electron microscopy DNA sequencing (3,145 words) [view diff] exact match in snippet view article find links to article

(US$) Cost of instrument (US$) Run time (h/Gbp) Massively parallel pyrosequencing by synthesis Second 400–500 Q20 read length of 40 bases (99% at 400

Lichenicolous fungus (7,354 words) [view diff] exact match in snippet view article find links to article

in the Ny-Ålesund Region (Svalbard, High Arctic) as revealed by 454 pyrosequencing". Scientific Reports. 5 (1): e14850. Bibcode:2015NatSR...514850Z. doi:10

Bactrocera dorsalis (3,143 words) [view diff] exact match in snippet view article find links to article

AA, Wan L, Dong YC, Li P, Desneux N, White JA, Niu CY (March 2015). "Pyrosequencing reveals a shift in symbiotic bacteria populations across life stages

ChIA-PET (2,925 words) [view diff] exact match in snippet view article find links to article

with tag-based next-generation sequencing approaches such as Roche 454 pyrosequencing, Illumina GA, ABI SOLiD, and Helicos. ChIA-PET is applicable to many

Aspergillus ochraceus (3,544 words) [view diff] exact match in snippet view article find links to article

characterization of bacteria and fungi in a poultry bioaerosol using pyrosequencing: a new approach". Journal of Occupational and Environmental Hygiene

Helmy Eltoukhy (2,769 words) [view diff] exact match in snippet view article find links to article

Ronaghi, Stanford Genome Technology Center, $1.8 million (3 years) "Pyrosequencing Array for DNA Sequencing" Ron Kerr, Helmy Eltoukhy, Bambi Francisco

Environmental persistent pharmaceutical pollutant (4,191 words) [view diff] exact match in snippet view article find links to article

Hanna; Larsson, D. G. Joakim (2011). Rodriguez-Valera, Francisco (ed.). "Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance

Hybrid genome assembly (2,940 words) [view diff] exact match in snippet view article find links to article

T., Ferriera, S., Friedman, R., ... Venter, J. C. (2006). A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies

Human milk microbiome (5,686 words) [view diff] exact match in snippet view article find links to article

in edentulous infants and their mothers or primary care givers using pyrosequencing". PLOS ONE. 6 (8): e23503. Bibcode:2011PLoSO...623503C. doi:10.1371/journal

Circulating tumor DNA (5,933 words) [view diff] exact match in snippet view article find links to article

Iwakawa R, Bagci G, Yokota J (March 2013). "Utility of serum DNA and pyrosequencing for the detection of EGFR mutations in non-small cell lung cancer".

Rhizopogon salebrosus (1,336 words) [view diff] exact match in snippet view article find links to article

Rhizopogon kretzerae and R. salebrosus (Rhizopogonaceae) from 454 shotgun pyrosequencing". Applications in Plant Sciences. 2 (7): 1400029. doi:10.3732/apps.1400029

Cooperia oncophora (3,883 words) [view diff] exact match in snippet view article find links to article

(2013). "Phylogenetic Characterization of β-Tubulins and Development of Pyrosequencing Assays for Benzimidazole Resistance in Cattle Nematodes". PLOS ONE.

List of RNA-Seq bioinformatics tools (20,393 words) [view diff] exact match in snippet view article find links to article

methods. Denoiser Denoiser is designed to address issues of noise in pyrosequencing data. Denoiser is a heuristic variant of PyroNoise. Developers of denoiser

Bacterioplankton counting methods (4,917 words) [view diff] exact match in snippet view article find links to article

2017.10.002. Andersson AF, Riemann L, Bertilsson S (February 2010). "Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton

List of sequenced plastomes (8,120 words) [view diff] exact match in snippet view article find links to article

Farmerie WG, Folta KM, Soltis DE (August 2006). "Rapid and accurate pyrosequencing of angiosperm plastid genomes". BMC Plant Biology. 6: 17. doi:10.1186/1471-2229-6-17

Source attribution (14,509 words) [view diff] exact match in snippet view article find links to article

identification of HIV-1 transmission in three lawsuits Using Ultra-Deep pyrosequencing and phylogenetic analysis". J Microbiol Immunol Infect. 54 (4): 596–605