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searching for Protein Data Bank (file format) 12 found (30 total)

alternate case: protein Data Bank (file format)

APBS (software) (322 words) [view diff] no match in snippet view article

the BSD license. PDB2PQR prepares the protein structure files from Protein Data Bank for use with APBS. The preparation steps include, but aren't limited

Cambridge Structural Database (1,914 words) [view diff] no match in snippet view article find links to article

complementary to the other crystallographic databases such as the Protein Data Bank (PDB), Inorganic Crystal Structure Database and International Centre

Biological Magnetic Resonance Data Bank (1,281 words) [view diff] no match in snippet view article find links to article

Bioinformatics and, since 2006, it is a partner in the Worldwide Protein Data Bank (wwPDB). The repository accepts NMR spectral data from laboratories

BioJava (4,099 words) [view diff] no match in snippet view article find links to article

many daily and mundane bioinformatics tasks such as to parsing a Protein Data Bank (PDB) file, interacting with Jmol and many more. This application

List of XML markup languages (2,605 words) [view diff] no match in snippet view article find links to article

especially in mathematics and other STEM disciplines. PDBML – XML for Protein Data Bank QuakeML – Quake Markup Language, an extensible and modular XML representation

List of file formats (14,668 words) [view diff] no match in snippet view article find links to article

phylogenetic trees. PDB – structures of biomolecules deposited in Protein Data Bank, also used to exchange protein and nucleic acid structures PHD – Phred

MOPAC (1,442 words) [view diff] no match in snippet view article find links to article

Molecular polarizability Automatic hydrogenation for pre-processing of Protein Data Bank structures INDO spectroscopy Configuration interaction PARAM, a companion

RefDB (chemistry) (751 words) [view diff] no match in snippet view article

resource that uses web-bots to query public databases (BMRB, GenBank, Protein Data Bank) and fetch assignment, sequence and structure data on a weekly basis

Crystallographic database (5,432 words) [view diff] no match in snippet view article find links to article

Kyle; Feng Zukang; Gilliland Gary L.; Iype Lisa; et al. (2002). "The Protein Data Bank". Acta Crystallographica Section D. 58 (6): 899–907. doi:10.1107/s0907444902003451

Digital curation (3,903 words) [view diff] no match in snippet view article find links to article

Hadron Collider at CERN and the database of protein structures at the Protein Data Bank. By comparison, archiving of analog assets is notably passive in nature

Research data archiving (3,070 words) [view diff] no match in snippet view article find links to article

the EMBL Nucleotide Sequence Database; DNA Database of Japan; the Protein Data Bank; and Swiss-Prot). Accession numbers must be included in the final

Timeline of crystallography (14,694 words) [view diff] no match in snippet view article find links to article

scanning transmission electron microscopy. 1971 - Establishment of the Protein Data Bank (PDB). At PDB, Edgar Meyer develops the first general software tools