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Longer titles found: Metabolomic Pathway Analysis (view)

searching for Pathway analysis 70 found (77 total)

Metabolic network modelling (5,355 words) [view diff] exact match in snippet view article find links to article

modelling, also known as metabolic network reconstruction or metabolic pathway analysis, allows for an in-depth insight into the molecular mechanisms of a

PathVisio (568 words) [view diff] exact match in snippet view article find links to article

PathVisio is a free open-source pathway analysis and drawing software. It allows drawing, editing, and analyzing biological pathways. Visualization of

MetaboAnalyst (892 words) [view diff] exact match in snippet view article find links to article

two-factor, and time-series data) Functional enrichment analysis Metabolic pathway analysis The table below summarizes the main features of each functional module

Biochemical cascade (11,432 words) [view diff] exact match in snippet view article find links to article

phosphorylation reactions and gene regulation events. Therefore, the term "pathway analysis" has a very broad application. For instance, it can refer to the analysis

BacMam (1,675 words) [view diff] no match in snippet view article find links to article

Baculovirus gene transfer into Mammalian cells (BacMam) is the use of a baculovirus to deliver genes to mammalian cells. Baculoviruses are insect viruses

ArrayTrack (601 words) [view diff] exact match in snippet view article find links to article

other bioinformatics software, such as pathway analysis tools GeneGo MetaCore and Ingenuity Pathway Analysis. ArrayTrack is freely available to the public

Stefan Schuster (973 words) [view diff] exact match in snippet view article find links to article

theory Metabolic control analysis Biochemical oscillations Metabolic pathway analysis Stefan Schuster has significantly contributed to the development of

Sorin Draghici (1,306 words) [view diff] exact match in snippet view article find links to article

computational biology and bioinformatics, in particular GO analysis, pathway analysis, meta-analysis, and drug repurposing. His research has been supported

Widest path problem (3,017 words) [view diff] exact match in snippet view article find links to article

multiway election, and has been applied to digital compositing, metabolic pathway analysis, and the computation of maximum flows. A closely related problem, the

Oncometabolism (3,430 words) [view diff] exact match in snippet view article find links to article

customization or informed adjustments. Ingenuity Pathway Analysis (IPA) is a metabolic pathway analysis software package that helps researchers model, analyze

Stanley Center for Psychiatric Research at Broad Institute (987 words) [view diff] case mismatch in snippet view article find links to article

the Stanley Center for Psychiatric Research include: The Network and Pathway Analysis Subgroup of the Psychiatric Genomics Consortium. Psychiatric genome-wide

MicrobesOnline (4,652 words) [view diff] exact match in snippet view article find links to article

integrated platform facilitates studies in comparative genomics, metabolic pathway analysis, genome composition, functional genomics as well as in protein domain

QIAGEN Silicon Valley (87 words) [view diff] exact match in snippet view article find links to article

research. Systems biology Bioinformatics Computational genomics Computational biology Microarray analysis DNA microarray Pathway analysis ingenuity.com

Biochemical systems theory (545 words) [view diff] case mismatch in snippet view article find links to article

University Press, Cambridge, U.K., 2000. N.V. Torres and E.O. Voit, Pathway Analysis and Optimization in Metabolic Engineering, Cambridge University Press

Francisella tularensis (1,998 words) [view diff] case mismatch in snippet view article find links to article

In silico Identification of Drug and Vaccine Targets by Metabolic Pathway Analysis J Harati, J Fallah The 6th Conference on Bioinformatics "Part IV :

List of systems biology visualization software (67 words) [view diff] exact match in snippet view article find links to article

data integration and visualization, easy to use and integrate into pathway analysis multiplatform (R/Bioconductor) GPL [15] [16] SBMLDiagrams Python API

Invitrogen (918 words) [view diff] exact match in snippet view article find links to article

for computational biology and bioinformatics), BioSource (cellular pathway analysis), CellzDirect (cell products and services for research) and Zymed and

List of RNA-Seq bioinformatics tools (20,394 words) [view diff] exact match in snippet view article find links to article

public data. Ingenuity Systems (commercial) iReport & IPA PathwaySeq Pathway analysis for RNA-Seq data using a score-based approach. petal Co-expression

Environmental factor (3,291 words) [view diff] case mismatch in snippet view article find links to article

2017). "Exposome-Scale Investigations Guided by Global Metabolomics, Pathway Analysis, and Cognitive Computing". Analytical Chemistry. 89 (21): 11505–11513

NCI-Nature Pathway Interaction Database (334 words) [view diff] case mismatch in snippet view article find links to article

Identification of Key Processes Underlying Cancer Phenotypes Using Biologic Pathway Analysis http://www.ndexbio.org UCSD-Nature Molecule Pages BioCarta PharmGKB

Gluconeogenesis (3,681 words) [view diff] exact match in snippet view article find links to article

(January 2009). "Can sugars be produced from fatty acids? A test case for pathway analysis tools". Bioinformatics. 25 (1): 152–8. doi:10.1093/bioinformatics/btn621

Franklin Stahl (1,079 words) [view diff] exact match in snippet view article find links to article

perspective. Gene 223: 95-102. Stahl, F. W. and H. M. Foss, 2010 A two-pathway analysis of meiotic crossing over and gene conversion in Saccharomyces cerevisiae

Robert Garner (1,903 words) [view diff] exact match in snippet view article find links to article

as animal protection movements in the two countries, using policy pathway analysis. By the late 1990s, Garner had been promoted to Reader. In 2005, Garner

Systems biology (9,938 words) [view diff] case mismatch in snippet view article find links to article

Alexander R.; Evelo, Chris T. (2015-02-23). "PathVisio 3: An Extendable Pathway Analysis Toolbox". PLOS Computational Biology. 11 (2): e1004085. Bibcode:2015PLSCB

Thiamine (6,259 words) [view diff] exact match in snippet view article find links to article

non-coenzyme action of thiamin in brain: biochemical, structural and pathway analysis". Scientific Reports. 5: 12583. Bibcode:2015NatSR...512583M. doi:10

Your Favorite Gene (212 words) [view diff] exact match in snippet view article find links to article

the CIO 100 Award for Innovative Web Research Tool. "Software aids pathway analysis and life sciences research". news.thomasnet.com. "MTB Europe -". mtbeurope

Acute kidney injury (5,038 words) [view diff] exact match in snippet view article find links to article

of acute kidney injury in critical care: evidence synthesis, care pathway analysis and research prioritisation". Health Technology Assessment. 22 (32):

Biomax Informatics (399 words) [view diff] case mismatch in snippet view article find links to article

to Represent Biological Network Associations". Protein Networks and Pathway Analysis. Methods in Molecular Biology. Vol. 563. pp. 241–58. doi:10.1007/978-1-60761-175-2_13

Metabolic engineering (1,985 words) [view diff] exact match in snippet view article find links to article

at which a given reaction in the network occurs. Simple metabolic pathway analysis can be done by hand, but most require the use of software to perform

Christos Pantelis (708 words) [view diff] exact match in snippet view article find links to article

"Predicting the diagnosis of autism spectrum disorder using gene pathway analysis" https://www.geneticsandsociety.org/article/genetic-test-autism-refuted

Eberhard Voit (1,277 words) [view diff] case mismatch in snippet view article find links to article

University Press, Cambridge, U.K., 2000. Torres, N.V., and E.O. Voit: Pathway Analysis and Optimization in Metabolic Engineering. Cambridge University Press

Bis(2-ethylhexyl) phthalate (3,796 words) [view diff] case mismatch in snippet view article

"Endocrine-disrupting Chemicals: Review of Toxicological Mechanisms Using Molecular Pathway Analysis". Journal of Cancer Prevention. 20 (1): 12–24. doi:10.15430/JCP.2015

Circadian clock (4,473 words) [view diff] exact match in snippet view article find links to article

were directly or indirectly associate with known clock components. Pathway analysis revealed these genes are overrepresented for components of insulin

Reactome (1,259 words) [view diff] case mismatch in snippet view article find links to article

(December 2020). "ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis". Molecular & Cellular Proteomics. 19 (12): 2115–2125. doi:10.1074/mcp

Bipolar disorder (18,063 words) [view diff] exact match in snippet view article find links to article

S2CID 9467242. Torkamani A, Topol EJ, Schork NJ (November 2008). "Pathway analysis of seven common diseases assessed by genome-wide association". Genomics

Commodity pathway diversion (2,898 words) [view diff] exact match in snippet view article find links to article

into other objects." Here she helps lay the foundation of commodity pathway analysis. Similarly influential is Munn's study of the Australian Gawan Kula

Gene expression profiling (4,009 words) [view diff] exact match in snippet view article find links to article

Woolf JP (2009). "GAGE: generally applicable gene set enrichment for pathway analysis". BMC Bioinformatics. 10: 161. doi:10.1186/1471-2105-10-161. PMC 2696452

ATG4B (1,285 words) [view diff] no match in snippet view article find links to article

AK (Jan 2012). "Imaging protein complex formation in the autophagy pathway: analysis of the interaction of LC3 and Atg4B(C74A) in live cells using Förster

Bacillus cereus (6,485 words) [view diff] no match in snippet view article find links to article

the glucose was catabolized by the hexose monophosphate oxidative pathway. Analysis of the core genome of B. cereus reveals a limited presence of enzymes

Biobase (company) (1,310 words) [view diff] exact match in snippet view article

expression and proteomics data by integrated functional, promoter and pathway analysis. The "Gene Regulation Portal" offers a number of earlier revisions

MAP1LC3B (1,799 words) [view diff] no match in snippet view article find links to article

(January 2012). "Imaging protein complex formation in the autophagy pathway: analysis of the interaction of LC3 and Atg4B(C74A) in live cells using Förster

Fluorescence recovery after photobleaching (2,725 words) [view diff] no match in snippet view article find links to article

Kenworthy, AK (2012). "Imaging protein complex formation in the autophagy pathway: analysis of the interaction of LC3 and Atg4B(C74A) in live cells using Förster

Genostar (432 words) [view diff] exact match in snippet view article find links to article

protein domains, comparative genomics, structural searches, metabolic pathway analysis, modeling and simulation of biological networks. Genostar's software

Biological data visualization (6,687 words) [view diff] exact match in snippet view article find links to article

783-791. Khatri, P., Sirota, M., & Butte, A. J. (2012). Ten years of pathway analysis: current approaches and outstanding challenges. PLoS computational

Peter Propping (1,403 words) [view diff] case mismatch in snippet view article find links to article

genome-wide SNPs. In: Nature Genetics, 45, 2013, S. 984–995 Network and Pathway Analysis Subgroup of the Psychiatric Genomics Consortium: Psychiatric genome-wide

Breast development (6,495 words) [view diff] exact match in snippet view article find links to article

Kraft P, Hunter DJ, Chanock SJ, Rosenberg PS, Chatterjee N (2010). "Pathway analysis of breast cancer genome-wide association study highlights three pathways

DNA methylation (13,345 words) [view diff] exact match in snippet view article find links to article

identification of DMRs across multiple samples. Gene-set analysis (a.k.a. pathway analysis; usually performed tools such as DAVID, GoSeq or GSEA) has been shown

Multifactor dimensionality reduction (4,523 words) [view diff] exact match in snippet view article find links to article

approaches have been used with MDR including entropy analysis and pathway analysis. Tips and approaches for using MDR to model gene-gene interactions

FAM131A (929 words) [view diff] exact match in snippet view article find links to article

Martin ER, Urbanic JJ, et al. (June 2019). "Genome-wide enriched pathway analysis of acute post-radiotherapy pain in breast cancer patients: a prospective

David Beratan (1,427 words) [view diff] exact match in snippet view article find links to article

258, 1740 (1992) JN Onuchic, DN Beratan, JR Winkler, and HB Gray, "Pathway analysis of protein electron-transfer reactions", 'Annu. Rev. Biophys. Struct

C14orf80 (1,198 words) [view diff] case mismatch in snippet view article find links to article

Mass Spectrometry (Report). Satoh J, Kawana N, Yamamoto Y (2013). "Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of

Multiomics (5,003 words) [view diff] exact match in snippet view article find links to article

Hernández-de-Diego, Rafael (2018-07-02). "PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data". Nucleic Acids Research. 46

Extracellular RNA (2,974 words) [view diff] case mismatch in snippet view article find links to article

in vitro and in vivo setting. Work by Hunter et al. used Ingenuity Pathway Analysis (IPA) software that associated exRNAs found in human blood microvesicles

Integromics (1,374 words) [view diff] case mismatch in snippet view article find links to article

Bioinformatics Computational Biology Microarray analysis DNA Microarray Pathway Analysis Proteomics Gene expression DNA sequencing "Genestack offers 'missing

Mir-503 microRNA precursor family (1,163 words) [view diff] exact match in snippet view article find links to article

adrenocortical tumors: microRNA, tissue-specific target prediction, and pathway analysis". Endocrine-Related Cancer. 16 (3): 895–906. doi:10.1677/ERC-09-0096

Causes of mental disorders (10,666 words) [view diff] exact match in snippet view article find links to article

S2CID 9467242. Torkamani A, Topol EJ, Schork NJ (November 2008). "Pathway analysis of seven common diseases assessed by genome-wide association". Genomics

CMAH (2,474 words) [view diff] case mismatch in snippet view article find links to article

monooxygenase)". Kwon DN, Chang BS, Kim JH (2014). "Gene Expression and Pathway Analysis of Effects of the CMAH Deactivation on Mouse Lung, Kidney and Heart"

Basic leucine zipper and W2 domain-containing protein 2 (1,644 words) [view diff] exact match in snippet view article find links to article

arrest and apoptosis in muscle-invasive bladder cancers: A microarray pathway analysis". Journal of Cellular and Molecular Medicine. 23 (6): 3905–3915. doi:10

In vivo magnetic resonance spectroscopy (4,864 words) [view diff] exact match in snippet view article find links to article

sequences are affected by crushers and phase cycling. As such, coherence pathway analysis has been used to develop optimized crusher schemes and phase cycling

CFAP206 (1,159 words) [view diff] case mismatch in snippet view article find links to article

(1996): 731-741. Satoh, Jun-ichi, Natsuki Kawana, and Yoji Yamamoto. "pathway Analysis of chIp-seq-Based nRF1 Target Genes suggests a Logical Hypothesis of

Prognosis of schizophrenia (4,308 words) [view diff] exact match in snippet view article find links to article

2011). "The genetics of antipsychotic induced tremors: a genome-wide pathway analysis on the STEP-BD SCP sample". American Journal of Medical Genetics. Part

Flux balance analysis (5,950 words) [view diff] exact match in snippet view article find links to article

Metabolomics Metabolic engineering Metabolic network modelling Metabolic pathway analysis Supplementary material to Edwards et al. 2001 Systems Biology by B

List of systems biology modeling software (3,390 words) [view diff] exact match in snippet view article find links to article

Johann M (1 January 2018). "PySCeSToolbox: a collection of metabolic pathway analysis tools". Bioinformatics. 34 (1): 124–125. doi:10.1093/bioinformatics/btx567

List of biologists (20,823 words) [view diff] exact match in snippet view article find links to article

biophysicist, pioneer in metabolic control analysis and metabolic pathway analysis Theodor Schwann (1810–1882), German physician and physiologist whose

List of biochemists (11,347 words) [view diff] exact match in snippet view article find links to article

University of Jena, pioneer in metabolic control analysis and metabolic pathway analysis. Rose Scott-Moncrieff (1903–1991). British biochemical geneticist at

Plant genome assembly (4,099 words) [view diff] exact match in snippet view article find links to article

an online web database resource for plant comparative genomics and pathway analysis based on Ensembl technology. Plant Genome DataBase Japan (PGDBj) is

Neurogenomics (9,520 words) [view diff] exact match in snippet view article find links to article

organization of white matter (invasive vs non-invasive). Subsequent pathway analysis of the gene expression data indicated mitochondrial dysfunction as

Open energy system models (24,170 words) [view diff] exact match in snippet view article find links to article

infrastructure. The research focus is on long-term system development and pathway analysis. The model was first used to analyze decarbonization scenarios at the

Biology of bipolar disorder (11,130 words) [view diff] exact match in snippet view article find links to article

PMID 25041243. Torkamani, A; Topol, EJ; Schork, NJ (November 2008). "Pathway analysis of seven common diseases assessed by genome-wide association". Genomics

Catalog of MCA Control Patterns (3,028 words) [view diff] exact match in snippet view article find links to article

Johann M (1 January 2018). "PySCeSToolbox: a collection of metabolic pathway analysis tools". Bioinformatics. 34 (1): 124–125. doi:10.1093/bioinformatics/btx567