Find link

language:

Find link is a tool written by Edward Betts.

searching for Particle mesh 18 found (25 total)

Ewald summation (2,878 words) [view diff] exact match in snippet view article find links to article

Applications include simulations of plasmas, galaxies and molecules. In the particle mesh method, just as in standard Ewald summation, the generic interaction

Molecular dynamics (10,318 words) [view diff] exact match in snippet view article find links to article

electrostatics methods such as particle mesh Ewald summation ( O ( n log ⁡ ( n ) ) {\displaystyle O(n\log(n))} ), particle-particle-particle mesh (P3M), or good spherical

List of MeSH codes (G14) (3,088 words) [view diff] case mismatch in snippet view article

retroviruses MeSH G14.080.708.330.800.200 – genes, intracisternal a-particle MeSH G14.080.708.330.800.400 – long interspersed nucleotide elements MeSH G14

Energy drift (1,139 words) [view diff] exact match in snippet view article find links to article

forth across the cutoff radius if sufficient smoothing is not used. Particle mesh Ewald summation is one solution for this effect, but introduces artifacts

Periodic boundary conditions (2,539 words) [view diff] exact match in snippet view article find links to article

can be used in conjunction with Ewald summation methods (e.g., the particle mesh Ewald method) to calculate electrostatic forces in the system. However

The Journal of Chemical Physics (609 words) [view diff] exact match in snippet view article find links to article

3684–3690 (1984), [15826 citations] T. Darden, D. York, J. Pedersen, Particle mesh Ewald – An N log(N) method for Ewald sums in large systems, 98(12),

N-body problem (8,738 words) [view diff] exact match in snippet view article find links to article

claimed that this further approximation reduces the complexity to O(n). Particle mesh methods divide up simulation space into a three dimensional grid onto

Desmond (software) (961 words) [view diff] exact match in snippet view article

Long-range electrostatic energy and forces can be calculated using particle mesh Ewald-based methods. Constraints can be enforced using the M-SHAKE algorithm

Biology Monte Carlo method (5,068 words) [view diff] no match in snippet view article find links to article

namely the Boltzmann transport Monte Carlo (BTMC) and particle-particle-particle-mesh (P3M). The first one uses Monte Carlo method to solve the Boltzmann

GADGET (565 words) [view diff] no match in snippet view article find links to article

with a hierarchical tree algorithm (optionally in combination with a particle-mesh scheme for long-range gravitational forces) and represents fluids by

Molecular mechanics (2,335 words) [view diff] exact match in snippet view article find links to article

Other more sophisticated but computationally intensive methods are particle mesh Ewald (PME) and the multipole algorithm. In addition to the functional

Particle-in-cell (3,438 words) [view diff] no match in snippet view article find links to article

interactions of particles only through the average fields are called PM (particle-mesh). Those which include direct binary interactions are PP (particle-particle)

QM/MM (2,191 words) [view diff] exact match in snippet view article find links to article

periodic pair-list updates and more recently the variations of the particle mesh Ewald (PME) method has reduced this to between O(N) to O(N2). In other

List of MeSH codes (G06) (1,845 words) [view diff] case mismatch in snippet view article

retroviruses MeSH G06.184.603.080.708.330.800.200 – genes, intracisternal a-particle MeSH G06.184.603.080.708.330.800.400 – long interspersed nucleotide elements

Implicit solvation (4,489 words) [view diff] exact match in snippet view article find links to article

reported to be faster than a full explicit solvent simulation with the particle mesh Ewald summation (PME) method of electrostatic calculation. There are

List of MeSH codes (D12.776.157) (4,484 words) [view diff] case mismatch in snippet view article

small cytoplasmic MeSH D12.776.157.725.500.750.800 – signal recognition particle MeSH D12.776.157.725.500.875 – ribonucleoproteins, small nuclear MeSH D12

Monte Carlo methods for electron transport (5,007 words) [view diff] no match in snippet view article find links to article

particles in an ensemble simulation. In this scope, Particle-Particle–Particle-Mesh (P3M) algorithms, which distinguish short range and long range interaction

List of MeSH codes (D12.776) (7,397 words) [view diff] case mismatch in snippet view article

small cytoplasmic MeSH D12.776.664.962.500.750.800 – signal recognition particle MeSH D12.776.664.962.500.875 – ribonucleoproteins, small nuclear MeSH D12