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Longer titles found: Kozak consensus sequence (view)

searching for Consensus sequence 211 found (324 total)

IRF8 (2,321 words) [view diff] exact match in snippet view article find links to article

Interferon regulatory factor 8 (IRF8) also known as interferon consensus sequence-binding protein (ICSBP), is a protein that in humans is encoded by the

Small nucleolar RNA SNORD14 (166 words) [view diff] exact match in snippet view article find links to article

essential for function. A similar structure, but with a different consensus sequence, is found in plants, but is absent in vertebrates. In human there

Hepatitis C virus nonstructural protein 5B (561 words) [view diff] exact match in snippet view article find links to article

several crystalline forms have been determined based on the same consensus sequence BK (HCV-BK, genotype 1). The structure can be represented by a right

Palmitoyl(protein) hydrolase (446 words) [view diff] exact match in snippet view article

122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence

NSP3 (rotavirus) (478 words) [view diff] exact match in snippet view article

Rotavirus protein NSP3 (NS34) is bound to the 3' end consensus sequence of viral mRNAs in infected cells. Four nucleotides are the minimal requirement

Monoacylglycerol lipase (965 words) [view diff] exact match in snippet view article find links to article

the serine hydrolase superfamily and contains the classical GXSXG consensus sequence common to most serine hydrolases. The catalytic triad has been identified

T-box (1,078 words) [view diff] exact match in snippet view article find links to article

All members of the T-box gene family bind to the "T-box", a DNA consensus sequence of TCACACCT. T-boxes are especially important to the development of

Autonomously replicating sequence (322 words) [view diff] exact match in snippet view article find links to article

functioning of the origin. Element A is highly conserved, consisting of the consensus sequence: 5'- T/A T T T A Y R T T T T/A -3' (where Y is either pyrimidine and

Deoxyribonuclease IV (1,305 words) [view diff] exact match in snippet view article find links to article

crucial role in increasing the hydrolysis rate of the endonuclease of a consensus sequence containing cytidine. The endonuclease IV falls under a structurally

Neuromedin N (521 words) [view diff] exact match in snippet view article find links to article

neurotensin are flanked by Lys-Arg amino acids, which comprise a consensus sequence for the endoprotease proprotein convertase. Neuromedin N is primarily

Geranylgeranylation (253 words) [view diff] exact match in snippet view article find links to article

catalyzes the addition of one geranylgeranyl group onto the C-terminal consensus sequence CAAL (somewhat similar to farnesyltransferase reactions), where C=cysteine

Rotavirus translation (317 words) [view diff] exact match in snippet view article find links to article

The viral nonstructural protein NSP3 specifically binds the 3'-end consensus sequence of viral mRNAs and interacts with the eukaryotic translation initiation

RNA recognition motif (812 words) [view diff] exact match in snippet view article find links to article

recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence. RRM proteins have a variety of RNA binding preferences and functions

Phrap (878 words) [view diff] exact match in snippet view article find links to article

early phases of the Human Genome Project: to determine the correct consensus sequence at all positions where the assembled sequences had discrepant bases

Bacteroidales-1 RNA motif (284 words) [view diff] exact match in snippet view article find links to article

is marked by a promoter on one end that conforms to an alternate consensus sequence that is common in the phylum Bacteroidota, and its 3′ end is indicated

DNM1 (1,472 words) [view diff] exact match in snippet view article find links to article

domain of dynamin at a single site that defines a new SH3 binding consensus sequence". J. Biol. Chem. 272 (20): 13419–25. doi:10.1074/jbc.272.20.13419

PrrB/RsmZ RNA family (354 words) [view diff] exact match in snippet view article find links to article

prrB gene sequence contains a number of imperfect repeats of the consensus sequence 5′-AGGA-3′, and sequence analysis predicted a complex secondary structure

Neuregulin 3 (2,559 words) [view diff] exact match in snippet view article find links to article

six cysteine residues and three disulfide bridges predicted by the consensus sequence of the cysteine residues. The neuregulins are a diverse family of

Short Oligonucleotide Analysis Package (970 words) [view diff] exact match in snippet view article find links to article

quality scores. SOAPsnp is a consensus sequence builder. This tool uses the output from SOAPaligner to generate a consensus sequence which enables SNPs to be

Luteovirus cap-independent translation element (279 words) [view diff] exact match in snippet view article find links to article

translation of genomic RNA and subgenomic RNA1 (sgRNA1). BTEs have a consensus sequence, GGAUCCUGGGAAACAGG, embedded in series of three to six stem-loops

MTMR1 (512 words) [view diff] exact match in snippet view article find links to article

myotubularin related family of proteins. Members of this family contain the consensus sequence for the active site of protein tyrosine phosphatases. Alternatively

Rab geranylgeranyltransferase (858 words) [view diff] exact match in snippet view article find links to article

is referred to as hypervariable. Thus Rab proteins do not have a consensus sequence, such as the CAAX box, which the Rab geranylgeranyltransferase can

IFI6 (626 words) [view diff] exact match in snippet view article find links to article

nucleotide repeating element resembling the mammalian splice donor consensus sequence begins near the end of the second exon. Alternatively spliced transcript

Specificity factor (141 words) [view diff] exact match in snippet view article find links to article

polymerase is directed to a specialized set of promoters with a different consensus sequence. Jang, Sei Heon; Jaehnings, Judith A. (1991). "The Yeast Mitochondrial

TEV protease (2,045 words) [view diff] exact match in snippet view article find links to article

controlled cleavage of fusion proteins in vitro and in vivo. The consensus sequence recognized by TEV protease is Glu-Asn-Leu-Tyr-Phe-Gln-|-Ser, where

Indian blood group system (152 words) [view diff] exact match in snippet view article find links to article

group-related polymorphism of CD44 abolishes a hyaluronan-binding consensus sequence without preventing hyaluronan binding". J. Biol. Chem. 271 (12): 7147–53

Kinase tyrosine-based inhibitory motif (318 words) [view diff] exact match in snippet view article find links to article

immunoreceptor tyrosine-based inhibitory-like sequence motif, with the consensus sequence I/V/L/SxYxxL/V, found in a kinase and regulating its activity. One

Glycosaminoglycan (2,639 words) [view diff] exact match in snippet view article find links to article

consensus sequence of E(E/L)PFPS. Additionally, for three other keratan sulfated proteoglycans, lumican, keratocan, and mimecan (OGN), the consensus sequence

IFIT proteins (539 words) [view diff] exact match in snippet view article find links to article

tetratricopeptide repeats (TPRs) which typically contains 34 amino acids with the consensus sequence [WLF]-X(2)-[LIM]-[GAS]-X (2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE]

IRF1 (1,827 words) [view diff] exact match in snippet view article find links to article

R, Levi BZ (June 1995). "Functional domain analysis of interferon consensus sequence binding protein (ICSBP) and its association with interferon regulatory

Dictyostelium class II RNA (294 words) [view diff] exact match in snippet view article find links to article

localised in the cytoplasm. Dictyostelium class I and II share a consensus sequence (5'-CCUUACAGCAA-3') which is found in an 'open' area of the secondary

ETS1 (1,811 words) [view diff] exact match in snippet view article find links to article

the consensus sequence for Ets1 is PuCC/a-GGAA/T-GCPy. On the other hand, many natural Ets1-responsive GGAA/T elements differ from this consensus sequence

Electrophoretic mobility shift assay (1,131 words) [view diff] exact match in snippet view article find links to article

narrow the search for identification of the transcription factor. Consensus sequence oligonucleotides for the transcription factor of interest will be

Small nucleolar RNA sR8 (499 words) [view diff] exact match in snippet view article find links to article

sR8 sR8 consensus sequence Identifiers Symbol sR8 Rfam RF01311 Other data RNA type snoRNA; CD-box Domain(s) Sulfolobaceae, Thermococcaceae PDB structures

Hatchet ribozyme (1,622 words) [view diff] exact match in snippet view article find links to article

application of comparative sequence and structural algorithms. The consensus sequence and secondary structure of this class includes 13 highly conserved

Picornavirus (3,684 words) [view diff] exact match in snippet view article find links to article

Pol4. The CRE loop has a defined consensus sequence to which the initiation components bind, but no consensus sequence exists for the supporting stem,

Circular chromosome (2,745 words) [view diff] exact match in snippet view article find links to article

function include DnaA boxes, a 9-mer repeat with a highly conserved consensus sequence 5' – TTATCCACA – 3', that are recognized by the DnaA protein. DnaA

F-box protein (735 words) [view diff] exact match in snippet view article find links to article

50 amino acids that mediates protein–protein interactions. It has consensus sequence and varies in few positions. It was first identified in cyclin F.

Hepatocyte nuclear factor 4 (533 words) [view diff] exact match in snippet view article find links to article

fold and interacts with co-activator proteins. HNF4 binds to the consensus sequence AGGTCAaAGGTCA in order to activate transcription. Mutations in the

GPR42 (559 words) [view diff] exact match in snippet view article find links to article

Connolly DT (November 2009). "Sequence polymorphisms provide a common consensus sequence for GPR41 and GPR42". DNA and Cell Biology. 28 (11): 555–60. doi:10

Rfam (1,164 words) [view diff] exact match in snippet view article find links to article

Secondary structure base pairs are coloured in blocks and identified in the secondary structure consensus sequence (bottom line) by the < and > symbols.

Cytoplasmic polyadenylation element (1,178 words) [view diff] exact match in snippet view article find links to article

necessary for translational activation to result. If the CPE has a consensus sequence, the presence of the PBE can double the resulting translational activation

Bordetella (2,575 words) [view diff] exact match in snippet view article find links to article

to a consensus sequence present within the coding sequences of at least some Bvg-repressed genes. Binding of this protein to the consensus sequence represents

Fibrillarin (1,583 words) [view diff] exact match in snippet view article find links to article

central region resembles an RNA-binding domain and contains an RNP consensus sequence. Antisera from approximately 8% of humans with the autoimmune disease

Heat shock factor (743 words) [view diff] no match in snippet view article find links to article

to Heat Shock sequence Elements (HSE) throughout the genome whose consensus-sequence is a tandem array of three oppositely oriented "AGAAN" motifs or a

SOS box (512 words) [view diff] case mismatch in snippet view article find links to article

1998). "The Bacillus subtilis DinR Binding Site: Redefinition of the Consensus Sequence". Journal of Bacteriology. 180 (8): 2201–2211. doi:10.1128/JB.180

RpoN (568 words) [view diff] exact match in snippet view article find links to article

bound at promoters. The RpoN-regulated promoter elements have the consensus sequence as follows: TTGGCACGGTTTTTGCT. Dong T, Yu R, Schellhorn H (January

COPS2 (1,273 words) [view diff] exact match in snippet view article find links to article

Dubiel W, Levi BZ (December 2000). "Interaction between interferon consensus sequence-binding protein and COP9/signalosome subunit CSN2 (Trip15). A possible

Crescentin (1,007 words) [view diff] exact match in snippet view article find links to article

animal intermediate filament proteins is that crescentin lacks certain consensus sequence elements at the ends of the rod domain which are conserved in animal

Amphiphysin (2,004 words) [view diff] exact match in snippet view article find links to article

domain of dynamin at a single site that defines a new SH3 binding consensus sequence". The Journal of Biological Chemistry. 272 (20): 13419–25. doi:10

Phospholipase D (3,897 words) [view diff] exact match in snippet view article find links to article

additionally encode highly conserved regulatory domains: the phox consensus sequence (PX), the pleckstrin homology domain (PH), and a binding site for

Calcium binding protein 2 (607 words) [view diff] exact match in snippet view article find links to article

approximately 5 kb, and is situated on chromosome 11q13.1. CaBP2 contain a consensus sequence for N-terminal myristoylation, akin to members of the recoverin subfamily

Interferon regulatory factors (1,098 words) [view diff] exact match in snippet view article find links to article

Driggers PH, Ozato K, Levi BZ (December 1992). "Human interferon consensus sequence binding protein is a negative regulator of enhancer elements common

Adrenodoxin reductase (1,939 words) [view diff] exact match in snippet view article find links to article

has a consensus sequence (Gly-x-Gly-x-x-Gly) that is similar to other Rossmann folds in FAD and NAD binding sites, the NADPH binding site consensus sequence

Alanine aminopeptidase (1,327 words) [view diff] exact match in snippet view article find links to article

large extracellular carboxyterminal domain contains a pentapeptide consensus sequence characteristic of members of the zinc-binding metalloproteinase superfamily

Rotavirus cis-acting replication element (84 words) [view diff] exact match in snippet view article find links to article

Barros M, Spencer E, Patton JT (April 2001). "Features of the 3'-consensus sequence of rotavirus mRNAs critical to minus strand synthesis". Virology.

DBT (gene) (1,085 words) [view diff] exact match in snippet view article

at a 5'-splice donor site of an intron of the E2 gene disrupts the consensus sequence in this region". J. Clin. Invest. 87 (4): 1207–11. doi:10.1172/JCI115120

GTPase (2,314 words) [view diff] exact match in snippet view article find links to article

nucleotides is imparted by the base-recognition motif, which has the consensus sequence [N/T]KXD. The following classification is based on shared features;

IRF2 (1,192 words) [view diff] exact match in snippet view article find links to article

Ehrlich R, Levi BZ (1995). "Functional domain analysis of interferon consensus sequence binding protein (ICSBP) and its association with interferon regulatory

Consensus CDS Project (2,912 words) [view diff] exact match in snippet view article find links to article

translation initiation site. A common start site is defined within Kozak consensus sequence: (GCC) GCCACCAUGG in vertebrates. The sequence in brackets (GCC) is

Base calling (205 words) [view diff] exact match in snippet view article find links to article

to a known reference. Consensus accuracy refers to how accurate a consensus sequence is compared to overlapping reads from the same genetic locus. Richterich

SUMO protein (4,911 words) [view diff] exact match in snippet view article find links to article

access software developed to predict the probability for the SUMO consensus sequence (SUMO-CS) to be engaged in SUMO attachment. The SUMOplot score system

Interstitial collagenase (1,549 words) [view diff] exact match in snippet view article find links to article

as the "active-site helix" encompasses part of the "zinc-binding consensus sequence" HEXXHXXGXXH that is characteristic of the Metzincin superfamily.

Mef2 (1,906 words) [view diff] exact match in snippet view article find links to article

Serum Response Factor) were cloned and shown to dimerize, bind a consensus sequence similar to the one present in the MCK enhancer region, and drive transcription

Prenylation (1,810 words) [view diff] exact match in snippet view article find links to article

is referred to as hypervariable. Thus Rab proteins do not have a consensus sequence, such as the CAAX box, which the Rab geranylgeranyl transferase can

Immunoreceptor tyrosine-based activation motif (1,268 words) [view diff] exact match in snippet view article find links to article

molecule (YxxL/Ix(6-8)YxxL/I). However, in various sources, this consensus sequence differs, mainly in the number of amino acids between individual signatures

N-glycosyltransferase (2,580 words) [view diff] exact match in snippet view article find links to article

pleuropneumoniae is an inverting enzyme and recognizes the NX(S/T) consensus sequence". The Journal of Biological Chemistry. 286 (40): 35267–35274. doi:10

SOS response (1,531 words) [view diff] exact match in snippet view article find links to article

repressor of the LexA protein. Under normal conditions, LexA binds to a consensus sequence (the SOS box) in the operator region of the SOS regulon genes. Some

Mitogen-activated protein kinase (5,510 words) [view diff] exact match in snippet view article find links to article

kinase group, the catalytic site of MAP kinases has a very loose consensus sequence for substrates. Like all their relatives, they only require the target

TCF/LEF family (2,039 words) [view diff] exact match in snippet view article find links to article

attaches to TCF/LEF DNA binding proteins, which recognise the DNA consensus sequence around the core 'CTTTG', called Wnt Response Element (WRE). This rule

Ectodysplasin A (1,239 words) [view diff] exact match in snippet view article find links to article

Zonana J, Thomas G, Morris NP (2001). "Mutations within a furin consensus sequence block proteolytic release of ectodysplasin-A and cause X-linked hypohidrotic

Papillorenal syndrome (1,382 words) [view diff] exact match in snippet view article find links to article

steady state mRNA levels, or the ability of Pax2 to bind to its DNA consensus sequence. Mutations related to the disease have also been noted in exons 7

RING finger domain (1,382 words) [view diff] exact match in snippet view article find links to article

processes that produce crossovers. The RING finger domain has the consensus sequence C-X2-C-X[9-39]-C-X[1-3]-H-X[2-3]-C-X2-C-X[4-48]-C-X2-C. where: C is

PRDM9 (1,919 words) [view diff] exact match in snippet view article find links to article

identified as PRDM9. In 1991 a protein binding to the minisatelite consensus sequence 5′-CCACCTGCCCACCTCT-3′ was detected and partially purified (named

Nuclear localization sequence (2,036 words) [view diff] exact match in snippet view article find links to article

considered the actual import mediator. Chelsky et al. proposed the consensus sequence K-K/R-X-K/R for monopartite NLSs. A Chelsky sequence may, therefore

SERPINA2 (1,044 words) [view diff] exact match in snippet view article find links to article

loop which is most compatible with protease inhibitory activity. The consensus sequence surrounding the reactive centre loop have diverged considerably so

Rossmann fold (1,373 words) [view diff] exact match in snippet view article find links to article

Hanukoglu from the Weizmann Institute of Science discovered that the consensus sequence for NADP+ binding site in some enzymes that utilize NADP+ differs

XPA (1,437 words) [view diff] exact match in snippet view article find links to article

pigmentosum: a missense mutation and two deletions located in a zinc finger consensus sequence of the XPAC gene". Human Genetics. 88 (6): 603–7. doi:10.1007/BF02265282

Pre-replication complex (1,928 words) [view diff] exact match in snippet view article find links to article

recognition is accomplished by DnaA. DnaA binds tightly to a 9-base pair consensus sequence in oriC; 5' – TTATCCACA – 3'. There are 5 such 9-bp sequences (R1-R5)

ADAM10 (2,614 words) [view diff] exact match in snippet view article find links to article

identical to enzymes in the Snake Venom metalloprotein domain family. The consensus sequence for catalytically active ADAM proteins is HEXGHNLGXXHD. Structural

NCR3 (2,482 words) [view diff] exact match in snippet view article find links to article

receptors as well. Accordingly the cytoplasmic tail lacks typical ITAM consensus sequence. Six different splicing variants can be found on the cell surface

Biological data visualization (6,673 words) [view diff] exact match in snippet view article find links to article

the last row in each column is often the consensus sequence determined by the alignment; the consensus sequence is also often represented in graphical format

Methyltransferase (2,919 words) [view diff] exact match in snippet view article find links to article

methionine is first cleaved by another enzyme and the X-Proline-Lysine consensus sequence is recognized by the methyltransferase. For all known substrates,

Steroid hormone receptor (2,757 words) [view diff] exact match in snippet view article find links to article

most likely interact with steroid hormones through an amino acid consensus sequence traditionally thought of as a cholesterol recognition and interaction

Annexin A2 (1,760 words) [view diff] exact match in snippet view article find links to article

tyrosine-protein-kinase, brings the phosphorylation site into the neighbourhood of a consensus sequence for Ca2+/lipid-binding proteins". FEBS Letters. 236 (1): 201–204.

Kv1.1 (2,239 words) [view diff] exact match in snippet view article find links to article

palmitoylated, modulating voltage sensing: Identification of a palmitoylation consensus sequence". Proceedings of the National Academy of Sciences of the United States

Scaffold/matrix attachment region (1,171 words) [view diff] exact match in snippet view article find links to article

recombination and chromosome condensation. S/MARs do not have an obvious consensus sequence. Although prototype elements consist of AT-rich regions several hundred

Control of chromosome duplication (2,036 words) [view diff] exact match in snippet view article find links to article

sequence elements. One of these is the A element (ACS), an 11 bp consensus sequence rich in adenines and thymines that is essential for initiation. Single

MN1 (gene) (1,883 words) [view diff] exact match in snippet view article

activates transcription of the IGFBP5 promoter through a CACCC-rich consensus sequence". Journal of Molecular Endocrinology. 38 (1–2): 113–25. doi:10.1677/jme

Constitutive androstane receptor (2,238 words) [view diff] exact match in snippet view article find links to article

distal enhancer activating transcription of CAR target genes. The consensus sequence of PBREM, containing direct repeat-4 motifs, was found to be conserved

IRF4 (2,598 words) [view diff] exact match in snippet view article find links to article

expression and distinct functions of IFN regulatory factor 4 and IFN consensus sequence binding protein in macrophages". Journal of Immunology. 163 (5): 2713–2722

MAFK (2,537 words) [view diff] exact match in snippet view article find links to article

element. Activation by oxidative stress and identification of the DNA consensus sequence required for functional activity". The Journal of Biological Chemistry

MAFG (2,631 words) [view diff] exact match in snippet view article find links to article

element. Activation by oxidative stress and identification of the DNA consensus sequence required for functional activity". The Journal of Biological Chemistry

Walker motifs (1,373 words) [view diff] exact match in snippet view article find links to article

most P-loop proteins situated well downstream of the A-motif. The consensus sequence of this motif was reported to be [RK]-x(3)-G-x(3)-LhhhD, where R,

Matrix metallopeptidase 13 (1,781 words) [view diff] exact match in snippet view article find links to article

discovered that there is a conserved forkhead response element (FHRE) consensus sequence for FOXO3a in the human, mouse and rat Mmp13 promoter. Endogenous

WRKY transcription factor (5,707 words) [view diff] exact match in snippet view article find links to article

transcription factors bind to the W-box promoter element that has a consensus sequence of TTGACC/T. Individual WRKY proteins do appear in the human protozoan

Crc (protein) (373 words) [view diff] exact match in snippet view article

A consensus sequence targeted by Crc mediated regulation

RBMS1 (551 words) [view diff] exact match in snippet view article find links to article

are characterized by the presence of two sets of ribonucleoprotein consensus sequence (RNP-CS) that contain conserved motifs, RNP1 and RNP2, originally

FNR regulon (1,423 words) [view diff] exact match in snippet view article find links to article

genes. The DNA target sequence called the Fnr box has the following consensus sequence TTGATNNNNATCAA and is located upstream of the Fnr-dependent genes

Ras GTPase (4,042 words) [view diff] exact match in snippet view article find links to article

provides specific interaction to guanine. The G5 motif contains a SAK consensus sequence. The A is alanine146, which provides specificity for guanine rather

Glypiation (746 words) [view diff] exact match in snippet view article find links to article

is recognized by a GPI transamidase (GPIT)[8] GPIT does not have a consensus sequence but instead recognizes a C-terminal sequence motif that enables it

HES1 (2,892 words) [view diff] exact match in snippet view article find links to article

unique DNA binding capacity. While most bHLH factors bind to the E-box consensus sequence (CANNTG) that is present in the promoter region of target genes, Hes

Roxan (830 words) [view diff] exact match in snippet view article find links to article

viral Nonstructural Protein NSP3 which specifically binds the 3' consensus sequence of viral mRNAs and interacts with the eukaryotic translation initiation

TNFAIP8 (474 words) [view diff] exact match in snippet view article find links to article

tumor necrosis factor-alpha-inducible gene, SCC-S2, containing the consensus sequence of a death effector domain of fas-associated death domain-like interleukin-

SCNN1B (3,035 words) [view diff] exact match in snippet view article find links to article

of three ENaC subunits, (α, β and γ) there is a special conserved consensus sequence PPPXYXXL that is called the PY motif. This sequence is recognized

Mutation (14,260 words) [view diff] exact match in snippet view article find links to article

the standard or so-called "consensus" sequence. This step requires a tremendous scientific effort. Once the consensus sequence is known, the mutations in

BglII (884 words) [view diff] exact match in snippet view article find links to article

architecture for the active site with the residues following the weak consensus sequence Glu/Asp-(X)9-20-Glu/Asp/Ser-X-Lys/Glu. BglII's active site is similar

TMEM144 (1,186 words) [view diff] exact match in snippet view article find links to article

letter, and low conservation with a dot. A plus or minus symbol in the consensus sequence indicates conserved basic (+) or acidic (-) properties. Transmembrane

Glial cell line-derived neurotrophic factor (3,122 words) [view diff] exact match in snippet view article find links to article

the protein precursor undergoes proteolysis due to a proteolytic consensus sequence in its C-terminus end and is cleaved to 134 amino acids. Proteases

PiggyBac transposon system (1,386 words) [view diff] exact match in snippet view article find links to article

.GGG 3', and apparently targets TTAA insertion sites. The LOOPER consensus sequence is on average 77% similar to individual sequences identified in the

Lipid-anchored protein (2,151 words) [view diff] exact match in snippet view article find links to article

fatty acids chains are also attached to palmitoylated proteins. No consensus sequence for protein palmitoylation has been identified. Palmitoylated proteins

Pinot noir (5,752 words) [view diff] exact match in snippet view article find links to article

; Demattè, L.; et al. (December 19, 2007). "A high quality draft consensus sequence of the genome of a heterozygous grapevine variety". PLOS ONE. 2 (12):

Rieske protein (1,380 words) [view diff] exact match in snippet view article find links to article

1). Comparison of amino acid sequences has revealed the following consensus sequence: Cys-Xaa-His-(Xaa)15–17-Cys-Xaa-Xaa-His The overall fold of Rieske

SCNN1G (3,401 words) [view diff] exact match in snippet view article find links to article

of three ENaC subunits, (α, β and γ) there is a special conserved consensus sequence PPPXYXXL that is called the PY motif. This sequence is recognized

Alu element (3,107 words) [view diff] exact match in snippet view article find links to article

PMC 4333407. PMID 25550429. Vansant, G; Reynolds, W. F (1995). "The consensus sequence of a major Alu subfamily contains a functional retinoic acid response

ChIP-exo (1,238 words) [view diff] exact match in snippet view article find links to article

protein had a tendency to use a particular motif with a stronger consensus sequence. Other genes often used clusters of weaker consensus motifs, possibly

ISG15 (2,575 words) [view diff] exact match in snippet view article find links to article

transcription factors, PU.1, IFN regulatory factor-8/IFN consensus sequence binding protein, and IFN regulatory factor-4: characterization of

U2 spliceosomal RNA (1,787 words) [view diff] exact match in snippet view article find links to article

10-16 base pair helix and a conserved 11 nucleotide loop with the consensus sequence 5´-UYGCANUURYN-3´. U2 snRNAs are the most extensively modified of

Free fatty acid receptor (2,804 words) [view diff] exact match in snippet view article find links to article

Connolly DT (November 2009). "Sequence polymorphisms provide a common consensus sequence for GPR41 and GPR42". DNA and Cell Biology. 28 (11): 555–60. doi:10

Meristem (4,747 words) [view diff] exact match in snippet view article find links to article

region specificity is achieved. WUS activates AG by binding to a consensus sequence in the AG's second intron and LFY binds to adjacent recognition sites

Immunoreceptor tyrosine-based inhibitory motif (1,799 words) [view diff] exact match in snippet view article find links to article

motif. ITIM motifs are defined as six amino acid signature with the consensus sequence S/I/V/LxYxxL/V, where x stands for any amino acid, Y for a tyrosine

SMAD (protein) (4,590 words) [view diff] exact match in snippet view article

motifs include the CAGAC and its CAGCC variant, as well as the 5-bp consensus sequence GGC(GC)|(CG). Receptor-phosphorylated R-Smads can form homotrimers

Nico van Zandwijk (631 words) [view diff] exact match in snippet view article find links to article

“Therapeutic potential of synthetic microRNA mimics based on the miR-15/107 consensus sequence”. Cancer Gene Therapy. "Professor Nico van Zandwijk". University of

Bacteriocin (3,542 words) [view diff] exact match in snippet view article find links to article

bacteriocins) are the largest subgroup and contain an N-terminal consensus sequence -Tyr-Gly-Asn-Gly-Val-Xaa-Cys across this group. The C-terminal is

YME1L1 (991 words) [view diff] exact match in snippet view article find links to article

different domains are identified via sequence analysis, including an AAA consensus sequence between amino acids 317 and 502, an ATP/GTP binding motif, and a HEXXH

KH domain (650 words) [view diff] exact match in snippet view article find links to article

predominantly found in prokaryotes. While both types share a minimal consensus sequence motif they have different structural folds. The type I KH domains

USF1 (4,563 words) [view diff] exact match in snippet view article find links to article

Representative illustration of bHLH motif binding to the consensus sequence on DNA

Edmund Mach Foundation (759 words) [view diff] case mismatch in snippet view article find links to article

Christine; Demattè, Lorenzo; et al. (2007), "A High Quality Draft Consensus Sequence of the Genome of a Heterozygous Grapevine Variety.", PLOS ONE, 2 (12):

Protein arginine methyltransferase 5 (1,410 words) [view diff] exact match in snippet view article find links to article

shallow groove located on the TIM barrel domain of PRMT5 and the consensus sequence GQF[D/E]DA[E/D] located in the terminal regions of the adaptor proteins

SHANK2 (1,587 words) [view diff] exact match in snippet view article find links to article

proline-rich region. This particular family member contains a PDZ domain, a consensus sequence for cortactin SH3 domain-binding peptides and a sterile alpha motif

Hybrid genome assembly (2,940 words) [view diff] exact match in snippet view article find links to article

Celera assembly program. This algorithm calculates an accurate hybrid consensus sequence by mapping higher accuracy short reads (from second generation sequencing

Subcommissural organ (3,542 words) [view diff] exact match in snippet view article find links to article

lipoprotein receptor type A (LDLrA) domains repeated ten times in the consensus sequence could provide a hint as to the function of SCORs, since LDLrA are

Knockout rat (3,269 words) [view diff] exact match in snippet view article find links to article

little bias for any particular genomic region, requiring a simple consensus sequence, 5′TTTT′A-3′ (along with minor variations of this sequence). Integrated

Grapevine Pinot gris virus (795 words) [view diff] exact match in snippet view article find links to article

mosaic virus. Giampetruzzi et al. originally reported a complete consensus sequence of 7258 nucleotides (excluding the polyA tail), which makes up three

AAMP (gene) (1,023 words) [view diff] exact match in snippet view article

superfamily protein expressed in blood vessels with a heparin-binding consensus sequence". Cancer Research. 55 (10): 2140–9. PMID 7743515. Maruyama K, Sugano

Calpain-2 (1,088 words) [view diff] exact match in snippet view article find links to article

catalytic CAPN1 and a regulatory CAPNS1 subunits. There is no known consensus sequence for calpain-2 proteolysis, but there is evidence for over 130 potential

Aryl hydrocarbon receptor (6,002 words) [view diff] exact match in snippet view article find links to article

(AHRE, DRE or XRE), contains the core sequence 5'-GCGTG-3' within the consensus sequence 5'-T/GNGCGTGA/CG/CA-3' in the promoter region of AhR responsive genes

COPS4 (968 words) [view diff] case mismatch in snippet view article find links to article

S, Bech-Otschir D, et al. (2001). "Interaction between Interferon Consensus Sequence-binding protein and COP9/signalosome subunit CSN2 (Trip15). A possible

PEG10 (1,356 words) [view diff] exact match in snippet view article find links to article

TGF-beta receptor family. The longer isoform has the active-site DSG consensus sequence of the protease domain of pol proteins. The longer isoform is the

Tyrosinemia type I (3,371 words) [view diff] exact match in snippet view article find links to article

mutation is IVS12+5(G->A) which is a mutation in the splice site consensus sequence of intron 12, therefore affecting exon 12. A second allele is the

Abgent (850 words) [view diff] exact match in snippet view article find links to article

respective substrate motif. SUMOplot predicts the probability for the SUMO consensus sequence (SUMO-CS) to be engaged in SUMO attachment. The SUMOplot score system

Amyloid (6,536 words) [view diff] exact match in snippet view article find links to article

proteins such as amylin and the β amyloid peptide do not have a simple consensus sequence and are thought to aggregate through the sequence segments enriched

Prostaglandin EP2 receptor (3,685 words) [view diff] exact match in snippet view article find links to article

in a Spanish population; SNP variant uS5 located in a STAT-binding consensus sequence of the regulatory region of PTGER2 with reduced transcription activity

Read (biology) (2,055 words) [view diff] exact match in snippet view article

advantage, because it is often difficult to generate long continuous consensus sequence using NGS because of the difficulty of detecting overlaps between

Douglas Cavener (261 words) [view diff] exact match in snippet view article find links to article

Douglas Cavener. D R Cavener (25 February 1987). "Comparison of the consensus sequence flanking translational start sites in Drosophila and vertebrates"

COPS8 (978 words) [view diff] case mismatch in snippet view article find links to article

S, Bech-Otschir D, et al. (2001). "Interaction between Interferon Consensus Sequence-binding protein and COP9/signalosome subunit CSN2 (Trip15). A possible

RNase MRP (1,778 words) [view diff] exact match in snippet view article find links to article

genes in domain 1 of the P4 helical region are conserved, with the consensus sequence in CR-IV being AGNNNNA for RNAse P and AGNNA for RNase MRP. CR-II

Rotavirus (10,104 words) [view diff] exact match in snippet view article find links to article

Cohen J (1993). "Rotavirus protein NSP3 (NS34) is bound to the 3' end consensus sequence of viral mRNAs in infected cells" (PDF). Journal of Virology. 67 (6):

CAPZA2 (1,143 words) [view diff] exact match in snippet view article find links to article

regularly spaced leucines at positions 258, 262 and 266 found in consensus sequence of KxxxLxxE/DLxxALxxK/R that are critical for actin binding; these

Annexin (3,529 words) [view diff] exact match in snippet view article find links to article

Geisow MJ, Fritsche U, Hexham JM, Dash B, Johnson T (April 1986). "A consensus sequence repeat in Torpedo and mammalian calcium-dependent membrane binding

Formylglycine-generating enzyme (1,211 words) [view diff] exact match in snippet view article find links to article

Aerobic FGE converts a cysteine residue in the highly conserved consensus sequence CXPXR to fGly. To do so, FGE "activates" its target by utilizing mononuclear

SH2B3 (1,921 words) [view diff] exact match in snippet view article find links to article

domains, LNK possesses a proline-rich region that contains a minimal consensus sequence of Pro-X-X-Pro, which is recognized by the SH3 domain of another protein

Single-molecule real-time sequencing (3,191 words) [view diff] case mismatch in snippet view article find links to article

continuous long reads or in pre-corrected HiFi (also known as Circular Consensus Sequence (CCS)) reads. For high-molecular-weight reads roughly half of all

RiAFP (1,229 words) [view diff] exact match in snippet view article find links to article

repeats, have been particularly helpful in the determination of the consensus sequence of these repeats. The TxTxTxT domains are irregularly spaced within

HIST1H1A (950 words) [view diff] exact match in snippet view article find links to article

mitotic specific phosphorylation site of histone H1. Absence of a consensus sequence for the p34cdc2/cyclin B kinase". J. Biol. Chem. 270 (46): 27653–60

Congenital disorder of glycosylation (3,800 words) [view diff] exact match in snippet view article find links to article

(Dol-P) anchor. The mature LLO is transferred co-translationally to consensus sequence Asn residues in the nascent protein, and is further modified by trimming

FepA (1,356 words) [view diff] exact match in snippet view article find links to article

through the pore. FepA then interacts with TonB through a 5 amino acid consensus sequence, which induces a change to the N-terminal opening a channel to the

Peptide microarray (2,262 words) [view diff] exact match in snippet view article find links to article

transduction pathways Detection of contaminating enzyme activities Consensus sequence and key residues determination Identifying sites for protein-protein

Jrk (1,281 words) [view diff] exact match in snippet view article find links to article

position 71. This means that it binds specific DNA sequences, the E-box consensus sequence in this case, that regulate transcription. This domain is a 60 amino

CREB-binding protein (5,272 words) [view diff] exact match in snippet view article find links to article

the protein, in its acetyltransferase domain, does not contain this consensus sequence, and has not been conclusively shown to bind zinc ions. Aka KIX domain

Exon shuffling (2,249 words) [view diff] exact match in snippet view article find links to article

duplications (TSD), the sequence around the 5' end matched with the consensus sequence for L1 endonuclease cleavage site and a poly(A) tail preceded the

CBX5 (gene) (2,431 words) [view diff] exact match in snippet view article

which can accommodate HP1 associated proteins that have a specific consensus sequence: PxVxL, where P is Proline, V is Valine, L is Leucine and x is any

Long-chain-alcohol oxidase (958 words) [view diff] exact match in snippet view article find links to article

N, Casey J, Cheng Q, Elborough KM, Slabas AR (February 2000). "A consensus sequence for long-chain fatty-acid alcohol oxidases from Candida identifies

Free fatty acid receptor 4 (7,963 words) [view diff] exact match in snippet view article find links to article

Connolly DT (November 2009). "Sequence polymorphisms provide a common consensus sequence for GPR41 and GPR42". DNA and Cell Biology. 28 (11): 555–60. doi:10

Split gene theory (7,418 words) [view diff] exact match in snippet view article find links to article

Eukaryotic RNA-polymerase-II-dependent promoters can contain a TATA box (consensus sequence TATAAA), which contains the stop codon TAA. Bacterial promoter elements

Peptide amphiphile (2,114 words) [view diff] exact match in snippet view article find links to article

adhesive RGD loop in fibronectin, the IKVAV sequence in laminin and a consensus sequence to bind heparin sulfate are just a few of the large library of sequences

DNA sequencer (3,850 words) [view diff] exact match in snippet view article find links to article

Reference Mapper maps short reads to a reference genome, generating a consensus sequence. The software is able to generate output files for assessment, indicating

LRRC57 (1,147 words) [view diff] exact match in snippet view article find links to article

LRRC57 amino acid sequence makes it easy to discern the LxxLxLxxNxxL consensus sequence of LRRs. 1 M G N S A L R A H V E T A Q K T G V F Q L K D R G L

Cyclin B3 (1,705 words) [view diff] exact match in snippet view article find links to article

residues different from the consensus sequence for B type cyclins and 22 residues different from the consensus sequence for A type cyclins. The destruction

GABRB2 (5,576 words) [view diff] exact match in snippet view article find links to article

for the modulation of GABAA receptor function. GABRB2 includes a consensus sequence for a calmodulin-dependent protein kinase II within exon 10 which

RNA editing (7,437 words) [view diff] exact match in snippet view article find links to article

PPR families, acting as trans -factors for cis -elements lacking a consensus sequence; Arabidopsis has around 450 members in its PPR family. There have

Helitron (biology) (3,784 words) [view diff] exact match in snippet view article

to shed light on the different steps of transposition. Based on a consensus sequence, it reconstructed the likely ancestor of the Helibat family of helitrons

Osteopontin (8,307 words) [view diff] exact match in snippet view article find links to article

charged amino acids such as Asp and Glu. OPN also has a large number of consensus sequence sites for post-translational phosphorylation of Ser residues to form

INAVA (1,233 words) [view diff] exact match in snippet view article find links to article

Surrounding sequence of start codons compared to Kozak consensus sequence

De novo sequence assemblers (2,192 words) [view diff] exact match in snippet view article find links to article

to determine a layout (or tiling) of the reads, and then produce a consensus sequence. Some programs that used OLC algorithms featured filtration (to remove

Nucleic acid structure prediction (4,806 words) [view diff] exact match in snippet view article find links to article

alignment tools to produce an alignment of several RNA sequences, to find consensus sequence and then fold it. Covariation can be extracted from a multiple sequence

Tn10 (820 words) [view diff] exact match in snippet view article find links to article

dependent upon sequences immediately adjacent to the target-site consensus sequence". Proceedings of the National Academy of Sciences of the United States

Sic1 (2,619 words) [view diff] exact match in snippet view article find links to article

so-called Cdc4 phospho-degrons (CPD). It has been shown that the optimal consensus sequence for Cdc4 is a phosphorylated serine or threonine followed by a proline

Origin of replication (12,563 words) [view diff] exact match in snippet view article find links to article

origin function. The A element encompasses the conserved 11 bp ARS consensus sequence (ACS), which, in conjunction with the B1 element, constitutes the

Ancestral sequence reconstruction (3,329 words) [view diff] exact match in snippet view article find links to article

increasing thermostability, one explanation is that ML ASR creates a consensus sequence of several different, parallel mechanisms evolved to confer minor

Resilin (3,121 words) [view diff] exact match in snippet view article find links to article

contains 62 amino acids of the chitin-binding Rebers-Riddiford (R-R) consensus sequence (Pfam PF00379); exon 3 encoded peptide is dominated by 11 copies of

Cyclin-dependent kinase complex (2,258 words) [view diff] exact match in snippet view article find links to article

Cdks lies in the active-site T-loop, which interacts with the SPXK consensus sequence that contains the phosphorylation site (see Figure 3-12). An RXL motif

Human endogenous retrovirus-W (4,810 words) [view diff] exact match in snippet view article find links to article

searching for the specific HERV family to which MSRV belonged. Using the consensus sequence for retroviral pol and "panretro" RT-PCR extensions from the pol region

Discovery and development of antiandrogens (4,594 words) [view diff] exact match in snippet view article find links to article

elements (ARE) on the promoter of the androgen responsive gene, a consensus sequence located either upstream or downstream of the transcription start site

AU-rich element (2,372 words) [view diff] exact match in snippet view article find links to article

class—they have a U-rich region but no AUUUA repeats. No real ARE consensus sequence has been determined yet, and these categories are based neither on

Calcium-binding protein 1 (1,284 words) [view diff] exact match in snippet view article find links to article

hypothalamus, where axonal labeling was detected. CAbP1 and CAbP2 contain a consensus sequence for N-terminal myristoylation. Transcription factor binding sites

TCF21 (gene) (3,630 words) [view diff] exact match in snippet view article

that capsulin heterodimerizes with E12 and binds the specific E-box consensus sequence (CANNTG), though not activating transcription through this sequence

Israel Hanukoglu (3,576 words) [view diff] exact match in snippet view article find links to article

classical Rossmann fold, but the NADPH binding site has a different consensus sequence that could be responsible for NAD vs. NADP coenzyme specificity. The

Tumor hypoxia (5,638 words) [view diff] exact match in snippet view article find links to article

glucose concentrations through a binding interaction at the same consensus sequence as HIF-1. Interactions of HIF-1 and ChoRE with the DNA sequence 5’-RCGTG-3’

GOLGA8H (1,378 words) [view diff] exact match in snippet view article find links to article

polyadenylation signals. Its sequence only partially matches a Kozak consensus sequence. The predicted secondary structure of GOLGA8H is composed of 81% alpha

GOLGA8H (1,378 words) [view diff] exact match in snippet view article find links to article

polyadenylation signals. Its sequence only partially matches a Kozak consensus sequence. The predicted secondary structure of GOLGA8H is composed of 81% alpha

Therapeutic gene modulation (3,994 words) [view diff] exact match in snippet view article find links to article

Desjarlais, JR.; Berg, JM. (March 1993). "Use of a zinc-finger consensus sequence framework and specificity rules to design specific DNA binding proteins"

Stanniocalcin (2,022 words) [view diff] exact match in snippet view article find links to article

make up the mature form of the hormone. One N-linked, glycosylation consensus sequence was identified in the protein coding region as well as an odd number

Bump and hole (2,562 words) [view diff] exact match in snippet view article find links to article

Ts has been difficult to achieve. The absence of a glycosylation consensus sequence and the variability of glycan elaboration pose a challenge to studying

Proteases in angiogenesis (5,459 words) [view diff] exact match in snippet view article find links to article

uncovering their functional and structural roles. ADAMs contain a consensus sequence which has three histidine residues that bind to the catalytically

DNA repair protein XRCC4 (5,681 words) [view diff] exact match in snippet view article find links to article

bulky, hydrophobic amino acid). In the case of the XRCC4 protein, the consensus sequence surrounding lysine 210 is IKQE. Chinese hamster ovary cells, CHO,

C1orf198 (2,260 words) [view diff] exact match in snippet view article find links to article

transcription (+1). With a matrix score of 0.83, it containing the correct consensus sequence, and its location on the promoter being correct, the probability of

Susan Zolla-Pazner (3,379 words) [view diff] exact match in snippet view article find links to article

domain of gp120 and differ only at single positions from the clade B consensus sequence". J Virol. 81 (3): 1424–1432. doi:10.1128/JVI.02054-06. ISSN 0022-538X

Small Maf (3,041 words) [view diff] exact match in snippet view article find links to article

element. Activation by oxidative stress and identification of the DNA consensus sequence required for functional activity". J. Biol. Chem. 266 (18): 11632–9

Magnesium transporter (12,030 words) [view diff] exact match in snippet view article find links to article

MgtE domains with 52% and 46% respective similarity to the PF01769 consensus sequence and is predicted to contain ten TM domains, five in each MgtE domain

Glossary of cellular and molecular biology (M–Z) (26,748 words) [view diff] exact match in snippet view article

Shine–Dalgarno sequence In many prokaryotic messenger RNAs, the consensus sequence AGGAGGU, located 6–8 bases upstream of the translation start codon

Donald Weeks (academic) (1,429 words) [view diff] exact match in snippet view article

Anthony, J. G., Sternberg, E. J., & Weeks, D. P. (1984). Repeated consensus sequence and pseudopromoters in the four coordinately regulated tubulin genes

Epitranscriptome (7,733 words) [view diff] exact match in snippet view article find links to article

(mt-mRNAs). In tRNA, PUS1 and PUS7 modify the second uridine in the UGUAR consensus sequence, as long as this sequence is located in a very structured region of

Source attribution (13,848 words) [view diff] exact match in snippet view article find links to article

because it is not possible for sequences to be nested within the consensus sequence from a single background host. In general, phylodynamics is a subdiscipline

Kevin Struhl (5,082 words) [view diff] exact match in snippet view article find links to article

Gene. 44: 177–183. Oliphant, A.R.; Struhl, K. (1988). "Defining the consensus sequence of E.coli promoter elements by random selection". Nucleic Acids Research

Αr45 RNA (2,021 words) [view diff] exact match in snippet view article find links to article

Agrobacterium groups presented a very well conserved motif that matches the consensus sequence recognized by the maltose repressor Mall. Furthermore, the promoters

Shapiro–Senapathy algorithm (8,393 words) [view diff] exact match in snippet view article find links to article

The intron-exon boundaries of Sf9 fut8 were in agreement with the consensus sequence for the splicing donor and acceptor sites concluded using S&S. Desmet

ZSWIM9 (2,154 words) [view diff] exact match in snippet view article find links to article

is indicative of ZSWIM9 protein function. SOX15 binds to the DNA consensus sequence 5'-AACAATG-3' and can function as both an activator and repressor

Annettee Nakimuli (2,340 words) [view diff] exact match in snippet view article find links to article

from Europeans. This study found that KIR2DS5*005 has the KIR2DS5 consensus sequence and was the only allele found at both centromeric and telomeric locations

Disputes on Wikipedia (4,083 words) [view diff] no match in snippet view article find links to article

Yasseri et al. categorized articles into three levels of disputation: Consensus, "Sequence of temporary consensuses", and "Never-ending wars". For content disagreements

Pan-genome graph construction (4,404 words) [view diff] exact match in snippet view article find links to article

sequence alignment as a directed acyclic graph (DAG) instead of a linear consensus sequence. In a POA graph, each sequence in the pan-genome is a path through