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Longer titles found: Random coil index (view)

searching for Random coil 55 found (107 total)

Chemical shift index (1,799 words) [view diff] exact match in snippet view article find links to article

as the type of protein secondary structure (beta strands, helices and random coil regions) found in proteins using only backbone chemical shift data The

NE-tag (384 words) [view diff] exact match in snippet view article find links to article

existing proteins found in nature. This synthetic NE peptide adopts random coil conformation and showing strong immunogenicity (computational prediction)

Calsequestrin (667 words) [view diff] exact match in snippet view article find links to article

active protein is not highly structured, more than 50% of it adopting a random coil conformation. When calcium binds there is a structural change whereby

Stomoxyn (123 words) [view diff] exact match in snippet view article find links to article

microorganisms, parasites and some viruses. In water, stomoxyn has a flexible random coil in structure, while in trifluoroethanol it adopts a stable helical structure

Molten globule (1,007 words) [view diff] exact match in snippet view article find links to article

ending at the native state. Although often considered a statistical random coil, the denatured state can retain residual structure that mediates (re)folding

MMP28 (1,280 words) [view diff] exact match in snippet view article find links to article

protein. The estimated signal peptide sequence appears as a long tail of random coil coming off of the protein that helps to guide the protein to excretion

C1orf122 (890 words) [view diff] exact match in snippet view article find links to article

The secondary structure of ALAESM is predicted to be structured as 55% random coil, 35% alpha helix and 9% extended strand. There are two alpha helices

Sericin (755 words) [view diff] exact match in snippet view article find links to article

acids, of which 32% is serine. The secondary structure is usually a random coil, but it can also be easily converted into a β-sheet conformation, via

Bruno H. Zimm (530 words) [view diff] case mismatch in snippet view article find links to article

BH; Bragg JK (1959). "Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains". Journal of Chemical Physics. 31 (2): 526–531

SNAP25 (5,006 words) [view diff] exact match in snippet view article find links to article

N-terminal α-helix Random coil linker region with four cysteines clustered towards the center C-terminal α-helix N-terminal α-helix Random coil linker region

Phoratoxin and viscotoxin (2,291 words) [view diff] exact match in snippet view article find links to article

as well as the two termini of the bound phospholipid move towards the random coil region (residue 36–44). >P. tomentosum phoratoxin A

FAM208b (2,213 words) [view diff] exact match in snippet view article find links to article

the protein forms alpha-helices, 15% forms beta-strands, and 60% is random coil. The various DUF domains are predicted to have variable structure. DUF3699

C17orf53 (1,349 words) [view diff] exact match in snippet view article find links to article

sheet, and random coils, with the majority of its structure taking on a random coil form. Shown in the figure to the right is the predicted tertiary structure

Chou–Fasman method (907 words) [view diff] exact match in snippet view article find links to article

"Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins". Biochemistry. 13 (2): 211–222. doi:10

Phosphomimetics (837 words) [view diff] exact match in snippet view article find links to article

Gerald; Okon, Mark; McIntosh, Lawrence P. (November 2014). "pH-dependent random coil 1H, 13C, and 15N chemical shifts of the ionizable amino acids: a guide

C21orf58 (1,729 words) [view diff] exact match in snippet view article find links to article

Secondary structure of C21orf58 is predicted to consist primarily of random coil domains with four regions of alpha helices throughout the span of the

Protein Structure Evaluation Suite & Server (710 words) [view diff] case mismatch in snippet view article find links to article

resonance spectroscopy Protein dynamics#Domains and protein flexibility Random Coil Index GeNMR Protein structure prediction Structural bioinformatics DSSP

Oat beta-glucan (2,821 words) [view diff] exact match in snippet view article find links to article

linked at the 1,3 and 1,4 carbon sites. Oat β-glucans can form into a random coil structure and flow with Newtonian behaviour until they reach a critical

CS23D (1,141 words) [view diff] case mismatch in snippet view article find links to article

spectroscopy Protein dynamics#Domains and protein flexibility Protein GeNMR Random Coil Index Protein Chemical Shift Prediction Protein Chemical Shift Re-Referencing

C7orf26 (1,542 words) [view diff] exact match in snippet view article find links to article

secondary structure composed of alpha helices, random coil regions and extended strands. Random coil regions are most found in c7orf26, as they constitute

KRBA1 (1,271 words) [view diff] exact match in snippet view article find links to article

very little specific secondary structure composed of mostly random coil regions. Random coil regions constitute 75.00% of the protein, while alpha helices

Copolymer (4,246 words) [view diff] exact match in snippet view article find links to article

in different environments. Some conformations that SMA can take are random coil formation, compact globular formation, micelles, and nanodiscs. SMA has

William Dale Phillips (1,850 words) [view diff] no match in snippet view article find links to article

Phillips, William D.. Proton magnetic resonance spectra of proteins in random-coil configurations. Journal of the American Chemical Society (1969), 91(6)

Guar gum (3,337 words) [view diff] exact match in snippet view article find links to article

is strongly shear-thinning. The rheology of guar gum is typical for a random coil polymer. It does not show the very high low[clarification needed] shear

GeNMR (787 words) [view diff] case mismatch in snippet view article find links to article

spectroscopy Protein dynamics#Domains and protein flexibility Protein Random Coil Index CS23D Protein Chemical Shift Re-Referencing Protein secondary structure

Nanofluidics (2,274 words) [view diff] exact match in snippet view article find links to article

from a virus have lengths of approx. 100–200 kilobases and will form a random coil of the radius some 700 nm in aqueous solution at 20%. This is also several

SOGA2 (1,538 words) [view diff] exact match in snippet view article find links to article

of SOGA2 is dominated by alpha helices with interspersed regions of random coil. GOR4 indicated that SOGA2 is dominated by alpha-helices; it predicted

Glutamate dehydrogenase 1 (3,043 words) [view diff] exact match in snippet view article find links to article

NAD-BD. The antenna consists of an ascending helix and a descending random coil strand that contains a small α-helix toward the C-terminal end of the

Dynamic light scattering (4,184 words) [view diff] exact match in snippet view article find links to article

same manner as the scatterer. So, for example, if the scatterer is a random coil polymer, the determined size is not the same as the radius of gyration

Liquid crystalline elastomer (1,552 words) [view diff] exact match in snippet view article find links to article

orientation and the polymer backbone can relax into (the more favored) random coil conformation. That can lead to a macroscopic, reversible deformation

Protein chemical shift re-referencing (1,834 words) [view diff] case mismatch in snippet view article find links to article

unresolved problem for the biomolecular NMR community. Chemical Shift Random Coil Index Chemical shift index Protein NMR RefDB (chemistry) SHIFTCOR Protein

TMEM44 (800 words) [view diff] exact match in snippet view article find links to article

TMEM44 has 41.12% of alpha helix, 15.65% of extended strand and 43.22% of random coil. There are seven predicted transmembrane domains in TMEM44 protein. GSK3B

SDS-PAGE (4,904 words) [view diff] exact match in snippet view article find links to article

complexes: evidence of their wormlike conformation by treating them as random coil polymers". Colloid and Polymer Science. 287 (8): 1001–1004. doi:10

KIAA1257 (884 words) [view diff] exact match in snippet view article find links to article

that has a high lysine content (15%). Most of the protein exists in a random coil structure but the final thirds contains 6 predicted alpha helices. KIAA1257

Polyacrylamide gel electrophoresis (4,717 words) [view diff] exact match in snippet view article find links to article

protein, but instead, through a conformational change to a combination of random coil and α helix secondary structures. When a protein mixture is heated to

ShiftX (764 words) [view diff] case mismatch in snippet view article find links to article

51, 0.53, 0.17, and 0.12 ppm. Protein Protein NMR NMR Chemical shift Random Coil Index Protein Chemical Shift Re-Referencing Protein secondary structure

Chloroplast DNA (5,829 words) [view diff] exact match in snippet view article find links to article

glutamic acid. In an aqueous solution, the transit sequence forms a random coil. Not all chloroplast proteins include a N-terminal cleavable transit

Hans Kuhn (chemist) (2,188 words) [view diff] exact match in snippet view article

a flowing viscous solvent. Werner Kuhn suggested him to replace the random coil by a dumbbell-model. Kuhn was fascinated by the model's simplicity and

Emulsion stabilization using polyelectrolytes (2,378 words) [view diff] exact match in snippet view article find links to article

charges on the polymer chain allowing the polymer chain to form a dense random coil. Electrostatic repulsive forces dominate in polyelectrolyte stabilized

Multiangle light scattering (3,598 words) [view diff] exact match in snippet view article find links to article

indicates a variation in conformation of a polymer from spherical to random coil to linear. Combining the mean-square radius from MALS with the hydrodynamic

CDV3 (gene) (911 words) [view diff] exact match in snippet view article

majority of the CDV3 structure is hypothesized to be alpha helices and random coil. The 3D structure of CDV3 was predicted through amino acid submission

Degradosome (1,890 words) [view diff] exact match in snippet view article find links to article

dynamic structure so the noncatalytic region of RNase E would form a random coil, and each of these coils would act independently from the other ones

SMIM15 (1,391 words) [view diff] exact match in snippet view article find links to article

with alpha helices making up 62.16% (46 amino acids) of the protein. Random coil makes up 25.68% (19 amino acids) and extended strands make up 12.16%

SNED1 (2,400 words) [view diff] exact match in snippet view article find links to article

(residues 25–1413) predicted by IUPred2A is 15.3%. A large proportion of random coil (73%) was predicted in SNED1 together with 26% of β-strands, and 1% of

CFAP206 (1,159 words) [view diff] exact match in snippet view article find links to article

protein UPF0704 is dominated by alpha helices with interspersed regions of random coil. PSORT II analysis predicts that there is a coiled_coil_region from 88

RESF1 (1,434 words) [view diff] exact match in snippet view article find links to article

nuclear protein. The secondary structure of RESF1 consists of mainly random coil structures (approximately 59.2%), few alpha helices (24% of residues)

FAM149A (1,841 words) [view diff] exact match in snippet view article find links to article

The structures analyzed include the α-helix, β-strand, β-turn, and random coil. Results were obtained using GOR4 and PELE from Biology WorkBench. GOR4

Trinucleotide repeat containing 18 (1,213 words) [view diff] exact match in snippet view article find links to article

TNRC18 consists of 32.61% alpha helix, 6.74% extended strand, and 60.55% random coil. This was found using the GOR4 program available at PRABI-Lyon-Gerland

Small integral membrane protein 14 (1,837 words) [view diff] exact match in snippet view article find links to article

also predicted that SMIM14 is randomly coiled near the C-terminus. A random coil is regarded as the protein's lack of a secondary structure, so it assumes

Transmembrane protein 179 (1,580 words) [view diff] exact match in snippet view article find links to article

predicted to be made up of mostly alpha helix (52.36%) with some regions of random coil (31.33%) and beta sheets (12.02%). transmembrane protein 179 is predicted

Bovine submaxillary mucin coatings (2,203 words) [view diff] exact match in snippet view article find links to article

which forces the molecules to extend into the ambient solution in a random coil conformation. Additionally, the high molecular weight of mucin allows

CLIP4 (1,601 words) [view diff] exact match in snippet view article find links to article

ankyrin repeats. The secondary structure of CLIP4 consists largely of random coil, with alpha helices as the second-most abundant structure and beta sheets

Rubber elasticity (7,078 words) [view diff] exact match in snippet view article find links to article

return to its equilibrium or unstretched state, such as a high entropy random coil configuration, once the external force is removed. This is the reason

C13orf46 (2,158 words) [view diff] exact match in snippet view article find links to article

to consist of a combination of alpha helices, beta sheets, and free random coil regions. There are 22 predicted alpha helices and 18 predicted beta sheets

Structure validation (4,707 words) [view diff] case mismatch in snippet view article find links to article

several current or proposed methods for making this distinction such as Random Coil Index, but so far the NMR community has not standardized on one. Cyro-EM